RNA id: XM_043261014.1


Basic Information

Item Value
RNA id XM_043261014.1
length 2871
RNA type mRNA
GC content 0.50
exon number 11
gene id cers2b
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 5853476 ~ 5873058 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tatctctctctctctctctctctctctctctttctctctgatcCTGCGTGTTTTACCGACGCCTGTCCCGCTGCCGCGCGCTCATCACCGGAGCCGAGCGGAAGAAAGACTCGAGTCGTCCGTGATCTCCTCAATCAGGAAATAGCGTTCAGACGCGCCACAGCCGTCGCTTCGTGGAGCCGCTCTCTCCGTTAAACCGATTTTTTACCAAgtagaaaactttttttgtgttcggGGAGGAGAGATGCGGTCGGTAAACAGCCTGGCCGAACCGTAAACCCGCGAACAGAGCGTTAAACCCAGCGGACAGAACCGGAGAAGCGAGAGACATCCCTCATCACGGTCCGCTGTTTCTGACCGACAGACGGCACACAGACTACtgaaGATGCTGGAGTGGGTGAGTGAAGTCTTCTGGCAGGAGCGTCTGTGGTTCCCCGAGGGTTTGGGATGGGCTGATCTGGAGGACCGTGATGGCCGGGTCTACGCCAAGGCGCGGGATCTGTGGGTGGCGCTGCCAATCGCCGTCCTGTTTCTCGCAATTCGACAGGTCTTCGAGAGATATGTGGCTACACCACTAGCCTCTCTGCTGGGCTTGAAGGAAACAACGAGACGACAAGTTACACGTAACCTCACACTGGAGTCCTACTATTGCAACACAACTAAAAACCCCAGTCAGAGCTCAGTGGAGAAGCTGTGCCTGCAGACGGGATGGACGGAGCGCCAGGTCCAGCGCTGGTTCAGACGCCGCAGGAATCAGGACAGACCCAACCTGCTCAAGAAGTTTCGTGAGGCCAGCTGGAGGTTTGCCTTTTACCTCCTCGCCTTCATCGGTGGTCTTGTTGCTCTAATAGATAAACCCTGGCTGTATGATCTGGAGGAGATGTGGAAGGGCTTCCCTACTCTGACGCTCCTGTCGTCTCAGTACTGGTACTACATGCTGGAGCTGGGCTTCTACACCTCTCTCCTCTTCAGCGTGGCGTCTGATGTCAAGCGTAAGGACTTCAAGGAGCAGATCATTCATCACGTGGCCACCATCATGCTCATCAGCTTCTCCTGGTGTGTTAATTACATCCGAGCGGGAACGCTCATCATGTTCATGCATGACTCGGCCGACTACCTGCTGGAGtcagcTAAGATGTTTAACTACGCCAGGTGGAAGAACGCATGCAACTACATCTTCATCCTGTTTGCTGCGATCTTCATCGTCACGCGCCTCATCATCTTCCCTTTCCGgATCATGTATTGTACATGGGTGTATCCCGTGACCCTGTACCCTCCGTTCTTCGGATACTACTTCTTTAACGGGCTGCTGATGGTCTTGCTGTGTCTGCACATCTTCTGGGCCGCGCTGATCATTCGCCTGGCCTTCCGCTTCCTGAGCAGTAACTCGTCGGTAGAAGACGAGAGGTCCGATCGAGAGGAGACGGACGAGTCAGAGGAAGAAGAACACATGAAAAACGGAGAGATAAAGAAGACCAGGCCAGCTCAGAACGGCCACGCTACGTACAACAACAACCACTCTAAGAAAACAGAGTGACGTCGAGAGAGGAGACACGTTCAGAGACCTAGAGATTCTTCCTCTGCTGAAGCAGAACAGAGACGGGAGAAGAACGGGATCAAGTGCTGTCTACACTAcagaccaacacacacacacacacacacacacacacacgcagggaGCAGTGCTGCCTTCATTAACACACGCTTACAGGAGCAGATCACCTAAAAATCAGCCTCATTTCCTGGCGCTGTTCCAAACGTCTAGTTATTTATAGCAGAATGTCCAAAGCAGCTCTTCCCGTACGATATAAATCAATACCGAGCACGGCGGTCACGCTTCCAGTCTCATATGGACTGCTTTCATGCTTCGTTGTGCTTCCTAGCGCCGGAAACCCTGCTTTCACTGAATGGAGACAGCCGTGGAACAcaagaaaaacacaattcagAGAAAATGTCCGAACTGTGAGACATAAACACCAAGATAGGTCTTTTAAACGTGCGTGGGTTTCTCTCTCGATTCCCGATATTCTGGTTGCCTTTTTTGTTTCTACATTCTGCGGCAAAGCAGTGGAAAGCAGATCAGATATGAAGCCAAACCTGCTCCTAAAAAGGCCTtacgagtaaatgatgacagatttagGTGATCTGTGCCTTCTAACAGTGCCTTCCTTAGCCATTCTTTGCTCTTTTTCATGCCTTGTTTTtcgtttttaattgaaaaaactGCTCTCTTTCCAGAGTATACCCATCCATCCTATAATGAATGCAGAACACATCTGATACCAAGTGGACCGGTTTGGTCTCAGTGCGGGTCACAGCCATGTCTCACAGAATCACTTTCAGGTTTCTGAACGCATCGGCTGCAAGCGAAGTCTTTCGCTTATTCATATGACTGGATTTAACCCACACATTGGGTTTCGCTCACGGCATCGGTCACCAAACACTGGTTGTGTGTGATGAGTATGAACCCCAGAAGTAACTGAGCGCACCTTTAAACGAGGCCAGACACGACTAGCTTCTTAACAAACCACCCATTCACTGCCAGTCTTTTGATGTTAAAGCCGAACAAACACGCACGGGCCAGTTGCAGCTCGTCCGCTGATTCTGAACACTCTCGAGCTGCCTGCCAAAGATTGAATGAATGTCGATGTGCTGCTGAAGACGTCTCGATCTTCTCTGTGGCCAGTTTCCTGTTCAGACGCTCGGACTCAGCTGCTTGGTCTGAATCATTCCTCCCGTCGCTCTCCTCTGGACTTCGTTTCAGACGCAGTCGAGTCGATTACAGTGTtacctttattttgtattttcctgTGTTTTGTAATATGATGATATTATGGAggatgttaacaataaaatactgaatGTAAGCCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24621 CERS2_4, LASS2_4; very-long-chain ceramide synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162695 lncRNA downstream 714 5852432 ~ 5852762 (-) True G110106
TU162691 lncRNA downstream 36603 5815560 ~ 5816873 (-) True G110102
TU162688 lncRNA downstream 39792 5809971 ~ 5813684 (-) True G110100
TU162689 lncRNA downstream 40955 5809971 ~ 5812521 (-) False G110100
TU162682 lncRNA downstream 69247 5783296 ~ 5784229 (-) False si:dkey-283b15.2
TU162868 lncRNA upstream 29519 5902577 ~ 6184069 (-) False LOC122359839
TU162879 lncRNA upstream 124563 5997621 ~ 5999361 (-) True G110206
TU162905 lncRNA upstream 245727 6118785 ~ 6119767 (-) True G110221
TU162910 lncRNA upstream 264049 6137107 ~ 6207805 (-) True G110224
TU162914 lncRNA upstream 266336 6139394 ~ 6208668 (-) True G110227
XM_043260635.1 mRNA downstream 3262 5834157 ~ 5850214 (-) False arnt
XM_043260632.1 mRNA downstream 3262 5834157 ~ 5850214 (-) False arnt
XM_043260634.1 mRNA downstream 3262 5834157 ~ 5850214 (-) False arnt
XM_043260631.1 mRNA downstream 3262 5834157 ~ 5850214 (-) True arnt
XM_043261179.1 mRNA downstream 30626 5820991 ~ 5822850 (-) True mrpl51
XM_043261140.1 mRNA upstream 3990 5877048 ~ 5900217 (-) False celf3b
XM_043261139.1 mRNA upstream 3991 5877049 ~ 5900216 (-) True celf3b
XM_043261141.1 mRNA upstream 3991 5877049 ~ 5900213 (-) False celf3b
XM_043261145.1 mRNA upstream 3991 5877049 ~ 5900210 (-) False celf3b
XM_043261144.1 mRNA upstream 3991 5877049 ~ 5900210 (-) False celf3b
TU162692 other downstream 35114 5817064 ~ 5818362 (-) False ndufa3
XR_006252935.1 other downstream 493797 5359510 ~ 5359679 (-) True LOC122361376
XR_006252797.1 other downstream 608015 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other downstream 608016 5235646 ~ 5245460 (-) False vegfaa
TU162095 other downstream 1757972 4094757 ~ 4095504 (-) True G109724
TU162864 other upstream 71163 5944221 ~ 5948789 (-) False LOC122359839
TU162885 other upstream 156150 6029208 ~ 6034777 (-) True G110208
TU162893 other upstream 223617 6096675 ~ 6099927 (-) True G110215
TU163014 other upstream 1208904 7081962 ~ 7083524 (-) True G110303
TU163032 other upstream 1322432 7195490 ~ 7201381 (-) True LOC122360222

Expression Profile