RNA id: XM_043261051.1



Basic Information


Item Value
RNA id XM_043261051.1
length 1168
RNA type mRNA
GC content 0.39
exon number 4
gene id LOC122360438
representative True

Chromosome Information


Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 25080457 ~ 25082777 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TGATGCATTGTGGTGCATATGGTTTTGTTGCTCTCAGTTCCCTGAACTCTTGAATTTTACAAGAAATGTGTGACAATCAGGTGAATGATCTGAGGACAAACTATCAATTCTTTACTCATGTGAGATCATATATTGATTGTTCAGAATTTATGTAGATCACATTTCCTATTACATCTTGGACCTCCCCCTTGGTGTGAGGCTTATATGCTTGAATCGGAAACGTTGCATACGAGAGTAGCAAGCgcggtgtgttggtgtgtgtcaCTACTTCCTTTTCAGCTGCAAGCCCCAGATCAAGAGGCTCAGGAGAGCACGAGATAGGAAACCTCTAGGCATTTTCTCATCTTTGCTGGACTGCTCATTTTGACTGACATGTCGAACCCAGTCATCACTCAGCCTGGGGCTGGATCTTACGGTACAAATGTGCAGACTGGAGAGTGGAGCACTGGTCTTTGTTCTTGCTGCAGTGACCTACTTGTCTGTGGTCTTGGCTTCATCTGTCCGATAGCTCTCAGCTGTTACACAGCGAACAAGTACGGTGAAAATTTATGTCTAGCTTGTGTACCAGGAGGAATGGCTGCAATGAGGACACACATGCGACTGACCTATGGAATACAGGGCACAATATGCAATGATGCTTTGATGACCTGTTGCTGTGGAATATTTGAAACCTGTAGAATGGCCAGAGAAATTCGTATCAGGAATGGAGAGGCCTAATTACTGCCTTCACTAATAACTGTTTCAGtcttaaaattgaaaaaatatatatttttataaaataaatatattttttattgaaataaaggCAGGAGGTATTGTTAAAAGCAGGATAATTACAACCAAGTTACAATTAATAAACGTACATTCTTTGGAAATAAAAAGCTTGACCCATACTGTTTAGTCAACAGTGTTACGTTATTGTAAAAGTTTTGAGTTTGCGTAAATTCTTATGTTCAATAATGCATTGTTTGTGGTGACATTTTTGCTGTAATGCTCAAAATGTGCTGCTAACCTGCAGCATTAATATGTAACTGTACAGAAGGTGTgtgtcatatatttaataatagccGCCAAACACAGTACAGTGTAAATCGTAGCCTACctaatcatattaaaataacgCAATTGTTTACGCCATTtgctgattaaataaatggtttgcattgtt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU171502 lncRNA downstream 245093 24835099 ~ 24835364 (-) True G116164
TU171520 lncRNA downstream 246499 24833536 ~ 24833958 (-) True G116179
TU171515 lncRNA downstream 257047 24821501 ~ 24823410 (-) True G116174
TU171248 lncRNA downstream 607092 24414226 ~ 24473365 (-) False serinc2l
TU171618 lncRNA upstream 94675 25177452 ~ 25178607 (-) True G116242
TU171609 lncRNA upstream 128616 25211393 ~ 25558018 (-) True G116237
TU171610 lncRNA upstream 128616 25211393 ~ 25557473 (-) False G116237
XR_006252863.1 lncRNA upstream 581942 25664719 ~ 25702534 (-) False LOC122361130
XR_006252864.1 lncRNA upstream 584305 25667082 ~ 25702534 (-) True LOC122361130
XM_043261047.1 mRNA downstream 152 25072879 ~ 25080305 (-) False oscp1b
XM_043261049.1 mRNA downstream 152 25072879 ~ 25080305 (-) True oscp1b
XM_043260692.1 mRNA downstream 9232 25053698 ~ 25071225 (-) False stk40
XM_043260691.1 mRNA downstream 10073 25053698 ~ 25070384 (-) False stk40
XM_043260690.1 mRNA downstream 10073 25053698 ~ 25070384 (-) True stk40
XM_043261050.1 mRNA upstream 136 25082913 ~ 25089706 (-) True mrps15
XM_043261776.1 mRNA upstream 24621 25107398 ~ 25118453 (-) True capn7
XM_043260119.1 mRNA upstream 78986 25161763 ~ 25172461 (-) False pik3r4
XM_043260117.1 mRNA upstream 78986 25161763 ~ 25172461 (-) False pik3r4
XM_043260118.1 mRNA upstream 78986 25161763 ~ 25172461 (-) False pik3r4
TU171232 other downstream 752484 24326707 ~ 24327973 (-) False phactr4b
TU171098 other downstream 1405159 23669898 ~ 23675298 (-) False mchr2a
XR_006252802.1 other downstream 1470616 23588185 ~ 23609841 (-) False usp45
TU171080 other downstream 1556075 23519808 ~ 23524382 (-) True G115882
TU170599 other downstream 2146490 22932627 ~ 22933967 (-) True G115554
TU171647 other upstream 585042 25667819 ~ 25676410 (-) False LOC122361130
TU172219 other upstream 1296895 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 1724343 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 1727540 26810317 ~ 26812909 (-) False G116632
TU172261 other upstream 1727540 26810317 ~ 26812909 (-) False G116632

Expression Profile