RNA id: XM_043261054.1


Basic Information

Item Value
RNA id XM_043261054.1
length 1853
RNA type mRNA
GC content 0.47
exon number 7
gene id grwd1
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13152349 ~ 13157873 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGAAGCGGAAGTCCTCCACTCTCTCAAAATGTCCGCGGCCGATGAAGACACGTTGCCTCAGGAGGACGATGAGTTTGAGGACATGGAGGAGAGTGAAAACGACGAGGATGATATGGATGGAGAAGGACAGAACGGGGATGGAGAGGGGAAAGTCTATGTCCCCGGTCTGCAGCCGCTTAAGCCGGGAGAAGAGCTGGAGATGGACCGCTCCGCTTACCGGATTTATCACGAGTGCCAGACCGGTGCCCCATGCCTGAGTTTCGATGTGGTGCGTGATGGTGAAGGAGAAGGGCGAGAGCAGTTTCCTCTCTCTATGATTCTGTGTGCTGGTACTCAGTCTGAAACCGCCTTACGCAACAGGCTTATTGTCATGCACATGCACAATCTTCATGAAACTGAAAAGGATaaagatgaaaatgaaagcAGTGATGAAGAAAGTGATGAAgacgaggaggatgaggagaaGAAACCACAGTTGGAGCTAGCCATGGTGCCACATTATGGTGGGATCAACAGAGTCCGAGTCACCCAGCAAGGGCAAAAGACATTTGCTGCGGTCTGGTCAGAGAAAGGACAGGTGGAGATTTTTGACCTCCAACCTCAGCTTGAGGCTGTGCAGAGTTCAGCAGCGATGTCAGCCTTCATCAAGCAGCAGAAGGAAGCCACGCctcttttcactttttctgGTCACATGTCAGAAGGGTTTGCCATTGATTGGTCATCCAAGGTACCAGGACGCCTGGTAAGTGGTGACTGCAAGAAGAACATTCACGTCTGGGAGCCACAGGAGGGCGGGACTTGGAAGGTTGACCAACGGCCTTTCAGCTCACACAGCAAGTCTGTTGAGGACCTGCAGTGGTCACCTACTGAAGCCACTGTTTTTGCATCTTGCTCAGTGGATCAGTCCATTCGCATCTGGGACATAAGGGCACCACCTAATTCCATGCTCTCAGCCGACGAGGCTCATTCTTCAGATATCAATGTTATCAGCTGGAACATGACCgaaccttttattttgtctgGAGGAGATGATGGCCTACTGAAAGTCTGGGATTTAAGACAGTTCCAGtctGGACGTCCAGTGGCCAGTTTTAAGCAGCACAGTGCTCCCGTGACGTCAGTGGAGTGGAACCCTGTTGACTCAAGTGTGTTTGCCGCCTCTGGAGCTGATGACGTGGTCAGCCAATGGGATCTGTCAGTGGAATCATGTGACATGGGAGAACAGGCAGAGGGCTTAAAACAACTACCACCACAGCTACTGTTCCTTCACCAGGGCCAGAAAGAAGTGAAGGAGCTCCACTGGCACCCACAGATTCCTGGAGTTCTCATTTCCACCGCGCTGTCGGGATTCAACATCTTCAGAACTATTTCtgtttaactgtgtgtgtgagtgagaagagagacagagaaagagagtgtggaCAGTTTCAGGCAGAAAgaatgtgcatgtgtataattttaaacgtacatagatggatgaatggaacATCTAGGTATGTGTGACTCAtgcatttctgtcatttttctaCCCCTTCTGGAACCATTTTCCTCAACTTCATGAAGCAAGCAGTGTTGTAATTGTGTGATAAATTACTCATTTTTACAAGTCTGttgtttattaactttatttaaaagttatagCACCATCATGTTTACTGCATATTTCTTGTagccattcatttaaaaaaaggcttcTTTTCTCTTAATGGacaaaacagagaaagataTTTTAGTCTTTCATTCTGAAACTCTTAAAGGCAGACTGTTGGTTTTAAGGCAGACTCCTGGTGTTTtgggttaaaaatatattatacttcCCACGttataataaacaatgttttgttagttccta

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K14848 RRB1, GRWD1; ribosome assembly protein RRB1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165647 lncRNA downstream 126220 13024933 ~ 13026129 (-) True G112229
TU165121 lncRNA downstream 499943 12567205 ~ 12652406 (-) True G111862
TU165120 lncRNA downstream 527730 12567205 ~ 12624619 (-) False G111862
TU165116 lncRNA downstream 540355 12557811 ~ 12611994 (-) True G111860
TU165016 lncRNA downstream 662229 12489782 ~ 12490120 (-) True G111799
TU165679 lncRNA upstream 30046 13187919 ~ 13200640 (-) False G112256
TU165680 lncRNA upstream 39005 13196878 ~ 13200640 (-) True G112256
TU165691 lncRNA upstream 56057 13213930 ~ 13227818 (-) True G112261
TU165689 lncRNA upstream 59330 13217203 ~ 13249624 (-) True G112260
TU165746 lncRNA upstream 131332 13289205 ~ 13292423 (-) True G112299
XM_043262033.1 mRNA downstream 5935 13144049 ~ 13146414 (-) True atg12
XM_043262032.1 mRNA downstream 8438 13136647 ~ 13143911 (-) False si:ch211-149k23.9
XM_043262031.1 mRNA downstream 8438 13136647 ~ 13143911 (-) True si:ch211-149k23.9
XM_043260184.1 mRNA downstream 26147 13124348 ~ 13126202 (-) True LOC122359945
XM_043260183.1 mRNA downstream 28462 13120866 ~ 13123887 (-) True LOC122359944
XM_043261899.1 mRNA upstream 929 13158802 ~ 13162784 (-) False zgc:174888
XM_043261898.1 mRNA upstream 929 13158802 ~ 13162784 (-) True zgc:174888
XM_043261894.1 mRNA upstream 5057 13162930 ~ 13170984 (-) True flcn
XM_043260047.1 mRNA upstream 43509 13201382 ~ 13204597 (-) True josd2
XM_043261089.1 mRNA upstream 148155 13306028 ~ 13319763 (-) True pitpnc1b
TU164609 other downstream 1740572 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 1865917 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 2269138 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 2285921 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 2404049 10746793 ~ 10748300 (-) False LOC122361037
TU165859 other upstream 496187 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 1076681 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 1751452 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 2310607 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 2310607 15468480 ~ 15496375 (-) False rps19

Expression Profile