RNA id: XM_043261089.1


Basic Information

Item Value
RNA id XM_043261089.1
length 2094
RNA type mRNA
GC content 0.46
exon number 10
gene id pitpnc1b
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13306028 ~ 13319763 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACACATGAAAACTGCAgtctgcttcttcttctttcacACTCACAGAAAAAGAGTAGAGAGAGGAAGCCTCAGTTTTGCTCTTACCTCTGCACTATCACGTTACACCATAAATTAAAAGCAGAACGGAAGAACTGAGTGCCAAGGAAGCGAGTACATTCATGACTCAGAGAGCCAGGAAAGAAGGAAAGACTAtgagaacaataaaataaacacggCGGCTACACATTGGCAGAGTTTACGGGACCGGCTCTGACATCAGTGAagtgagagaggaagaggggTGCAACATTGCTTTACGGAAACCGCTTGACAGTTTCACGCCGAAACAGTTTGAAAATAGGAAACAGACGCTTAAGAGAAACagaaagggaaagaaagagaaaaggataAAGCGAAGCCTGTTTAAGCCGAACCATGTTGATGAAAGAATACCGGATATGCATGCCGCTCACTGTCGATGAGTACAAGATCGGCCAGTTATACATGATCAGCAAGCACAGCAGTGAGCAGAGCGGAGGAGGCGAAGGGGTGGAGGTCGTCCGGAATGAACCCTGCACAGACCCCAAACACGGAGCCGGACAGATCACAGAGAAACGCATCTACCTCAACAGCAAACTGCCAACCTGGATAAGAAAGTTTGTTCCCATGATTTTTTATATCACAGAAACTGCCTGGAACTTCTACCCTTACACCGTCACAGAGTACACGTGTTCCTTCCTACCGAGGTTCCACGTCAAGATTGAGACACACTTTGAGAATGACAACGGATGCAATGAAAATGTGTTTGGTGACGACCCCACTTCAAAGGACAGTGTCTGCTTTTTGGATATTTTGAGCGATCCGATCCCTGACAAGCATTACAAGAAGTCTGAGGATCTGAGCAACTGGGTGTCACAGAAAACAGGCCGGGGACCCCTTGTGGACGGCTGGAGGAACACCACGAAACCCATCATGTGCTCCTACAAGAGAGTCACCTGTAGCTTTGAGGTCTACGGCTTCCAGGGACGAACAGAGGACTTCATTCACAGGAACATTCGTGACATTCTGCTGGTGGGACACAGGCAGGCGGTGGCATGGATTGACGAGTGGCATGGAATGACCCTCGAGCAGGTGAGAGAGTATGAGAGAAAACTGCAGGAGGAGACCAACAGCAAGCTCAAGAGCGACATTACCTGCACAGACTCTGCTCCTCCGGTGCGACCCAGCTTCACTCGCTCCATCTCGGTTACGGATGAGTCGTCACTGAAAAAGATGGGGGTAAAGACTGTAGACATTCCAAGCTCTCCGTCCTGCCCTTCCTCCCTCAAAAATCCCATGAGATTAAACTCTACACCAGAATAGCGCCACATCCACCGTCCACTGCCTGCATCTACGTTTAACAAAATTCTGGACCTGGGCGTTCTCTTCTAACCAAAACTAGAAAGACATCCCACGCTGTCACCCTCTGCTCTCCGTTCCAACTGCAGAGGCTGGCAAAAACACGAAGAACCGAAGAATTGTAGATATCCTGTAAAAAGACTTCTCATCAAGTGAAACCATAGTGCCTTAATTTACATTTCTCAGAGACCTCGACAAAACGGATTGAACAAACGGTCTATCCCACTGCCTTCGAACAAGAAGGGGATCACAGAATGCAGAGGAAAAGCCTCTGTTGACATAATctgtagactgtttcagtgAAACCTGATCATATGGATTACGGCAATCGCGAGTGACTAGCCAAATTTTCAAGATGGTTACGGGTTATTGAGACTAACCTCTGACCCTGTATCAATACATTGACAGAATGCAATTGATTGTTTAGTCGTGCAGCACAGAACGAGAACGTACAGTGCAACGGGTGATCAGACGAAAGACTAGAATGGATGAAGCATTTTGTGTTATTTGAAACCTGTCTTTGGTGATGAACCATAAGTGCACAACCATAAATTCACATCATTGATCATTAATATTGCCAACATTGTTACGTCAAGCCATTCAAACAAGCTTAAAAAGTGGCATTTCttcacaatttagttttttattataatgcatgaTACtcttgtgtatttaaatgtagctaaaataaactgaCTGCAACCACCTTCAAAAAAA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165746 lncRNA downstream 13605 13289205 ~ 13292423 (-) True G112299
TU165689 lncRNA downstream 56404 13217203 ~ 13249624 (-) True G112260
TU165691 lncRNA downstream 78210 13213930 ~ 13227818 (-) True G112261
TU165679 lncRNA downstream 105388 13187919 ~ 13200640 (-) False G112256
TU165680 lncRNA downstream 105388 13196878 ~ 13200640 (-) True G112256
TU165763 lncRNA upstream 111381 13431144 ~ 13434295 (-) True G112315
TU165802 lncRNA upstream 120907 13440670 ~ 13447178 (-) True G112336
TU165793 lncRNA upstream 129744 13449507 ~ 13471686 (-) True G112327
TU165807 lncRNA upstream 135794 13455557 ~ 13461725 (-) True G112339
TU165828 lncRNA upstream 214958 13534721 ~ 13543311 (-) True G112350
XM_043260047.1 mRNA downstream 101431 13201382 ~ 13204597 (-) True josd2
XM_043261894.1 mRNA downstream 135044 13162930 ~ 13170984 (-) True flcn
XM_043261899.1 mRNA downstream 143244 13158802 ~ 13162784 (-) False zgc:174888
XM_043261898.1 mRNA downstream 143244 13158802 ~ 13162784 (-) True zgc:174888
XM_043261054.1 mRNA downstream 148155 13152349 ~ 13157873 (-) True grwd1
XM_043260540.1 mRNA upstream 153712 13473475 ~ 13485710 (-) True cacng6b
XM_043260533.1 mRNA upstream 167588 13487351 ~ 13494251 (-) False u2af2a
XM_043260532.1 mRNA upstream 167588 13487351 ~ 13494237 (-) True u2af2a
XM_043260536.1 mRNA upstream 167588 13487351 ~ 13494231 (-) False u2af2a
XM_043260534.1 mRNA upstream 167588 13487351 ~ 13494231 (-) False u2af2a
TU164609 other downstream 1894251 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 2019596 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 2422817 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 2439600 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 2557728 10746793 ~ 10748300 (-) False LOC122361037
TU165859 other upstream 334297 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 914791 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 1589562 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 2148717 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 2148717 15468480 ~ 15496375 (-) False rps19

Expression Profile