RNA id: XM_043261112.1


Basic Information

Item Value
RNA id XM_043261112.1
length 4076
RNA type mRNA
GC content 0.46
exon number 9
gene id cadm4
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 15506059 ~ 15627109 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCAGATTACTTAAGGAGATTCGGACTacgaaaaagaaaagaaacaatacTTGAAGAAATCAGAGGACCTTCTGCCGATGGACAGCtcaagaaaaagagagaaggaagaaaggaaaGGAGAGATGGATTAACTTTGACTCAACCTTGGTGGAAGTAGGGGAAGTTGTGTGACGACTTTGGGGAAAATCGAATAGAATCAGGCAGTTACCTGAGGCACAGATCTGAAGTTGTGCTCCCACACTGAGAATATCAGCCCTGCCAATCACCGTGTGTGTTAGTGAGGATCCTGGCTGTGCTCAGTATCACGGTGTGCTTAGAACACTAGTGTGATTGGCCGTTCTGGGCTTTAATACTCCTGTTCTCATGGTGCGATAACACATAGCTCTTTGTTAGGGATCATTTTGGGCTTTTGAGCCAGCTCTTCAAGTTCCTACTGTACacgtttttcagtgttttagagCAAAGCCTTTAATGTGTCATACATAGATGTGTGGTATGCAATCTCAACTTCAATTCCACTTCAGATTAGTTATAGATTTGGTTATACGACGCAAAATACATCATCGACCGCTTTGTCTGTACTTCCATTGTTTTGTGCAGTCTTTTTTAAAGTCGCGCAGATGTGGTTGTTGAACTCCTTACAGTTGAAATACTTGTTTAAAATCTGGTGAAAACAGTTGGCAGACTAGATAGCGCATTGATTTATGATTGTTTCAGCGAGCCAGACTGTGTTTGCTGTATCACGGTGTCATTCTGGCACCGGTCTGCGCGTCATGACGAGGTGAATCTCAACAGGCTCTGCCTTCTTGCGAAAGAGAACAACAAACCCGCAAAACCAGACAAGACGTGCAGTAAAAACAAGAATTTCATAAGCGAACACTTTTGCGTGATTTAGTTCTGTGATGTGGTTAGCCGGCTATCGTTTCAGATATAAACACAACAGCCTTCTGCATAACAAATACGATATTATCTAAAAGCCACTACTCCATTAATGTACGCAACATCCGAGTTTAGTATTTGAGTGCTATTGAGTGGTTTGATGGGAATGTTGTCTGGAAATTGCAACAGTTTCTTTTTACTCTTGAACGTTGAGCATTGTTTTAATTAGCCACCTTCGGCTGGTTATTATTGCATGCGATATTAGTTGCTTGAGGATTAAAACGCAGCCGCTAAAGTGATTTAGTTAACCTTGCGCTTTAAAGAGCACTGGTGTTTGGTGTAGTAATTTTGCAGCAGTTTCAGCTGTGTAGCGTGTGCTGAATTGTGCAGTCATCAACCACAGAGGCCTCATTGATCAGCTACCGAGCCTCAATACACAATGAGACGAGGCCAGCgatctctcctcctctcctccactCCATCCCTCCTGCTGCGGTCCCTCGTTCTGCTCTCCCTCTGCCCGCAGGGGCAGGCCGTGCAGGCTGAGAACGTGACCGTGCTGGAAGGAGGGACGGCACAGATCTCCTGTCGTCTGCAGAACTACGACGGCTCCATCGTGGTCATCCAGAACCCGCGCAGACAAACGCTGTTCTTCAATGGAACGCGAGCACTGAAAGACGACCGTTTTCAGATGGTTCTTTTCACACCGCGCCTGGTGCGGATCACGTTGACTAACGTAAGTGTATCTGACGAGGGTGGCTACTTCTGCCAGCTCTACACCGATGACACACACCACCAGGTGGCGACGCTCTCGGTGGTGGTGCCTCCAGAGGTGCCTACAGTGGAGGTGAAGACGGAGGCGGTGGAGGGTGGAGAGGTGGAACTCACATGTGTGTCCCCGCGGAGCAAACCTCCGGCCACCCTGCGCTGGGTCCGAGATCGCAGAGAAATCGCAGGTGTGATCTCTCAGCAGGAGAACGGCAAGACCGTGAGTGTTTCCAACACTATCCGTATCCCTGTGGAGAGGAAAGATAACGGAGCGGCGCTGAGCTGTGAGGCGTCTCACCCGGCACTCGTGGGGCAGAAACGAGTTCGTCACTACAGCCTGGACGTTCACTTTGCTCCTACGGTGAAAATCATTCCCCCTCAGGGCATCCTCCGAGAAGGAGACTCCCTCAGTCTCACCTGCTCCGTTACCGGCAACCCACTACCGCGTGACATCCAGTGGTCGCGAGTGAATGACACTCTTCCTGATAGGGCGGAGAAAACGGGCAACATTCTCCATATGTCTCGCCTCAGCCAATCACACAACGGCACCTACCTCTGTCAGGCGCATAATAATTACGGCCGTGCAGCCGATCACTACACACTTCTGGTATATGTGTCTGTCCTTCCCAAATCTCATCCTGCCATCGCTCACCCCACCCTTCCATCCTCCAGCTTTACGAAGGAATACCAAGacCCCGGGGCAGTGGTGGAAACCCACAGTGCTGTTCCGTATGCAGTGATCGGGGGCATCCTGGCTCTGCTGGTCTTCACTGTCATCTGTGTGCTCATCGTCACCATCTGGTGCTCCGTCCGACAGAAAGGTTCATATTTGACTCACGAGGCCAGTGGGCTGGATGAACACGGTGAGGTTCAGGAGGCGTTCCTCAACGGTAATGATGCCAGTCAGGGCAAGAAGGAGTACCTACTGTAGCGACCGCCCTAGAGGAGCTCTTCGGAAACACTGGACCACTACAGAGTGCACATCGCAACACACACTGTTCCCAAACAGACCCACACCACCACTGCGACAACCAGAGGGAATCACAATCGTGCCATATGAAGTTGGAGTGGGAAGGAGAGGACGGAGACAATAATGGAGCGGGGTGGAGAGAGCCGAAAGGAGAGGATAATTATTATGATTGAAAAGccgtcacacacactctttctgtttttacttGCGAGTACGATAGACAACTAGCCATAATTGTAGGACCAGGAGAGAAAAGTGTCCATTCAAAACAAGCCGATCCATAACCGGGTGAAACAGCGTCACCGTGGGAAGCCTCAAAGGGCTTATGAGCTATTGAATGTCCCAACGTGAGCAAATTGAAATTCCCTGCATTTGCCAAAGCGTTCGGGTCTCAGAGACTGAGCTGGTAGACAATAAATCCACCAATGACAGCGCTGAGAGCTCAGAGCCGTCCTCATAAAGTATTCATCTGCGCTTTTCATCCGCAGACTCCATTATCTGCTCACGTTGGCCAATAACCTGTTGACTTGTGAAGAAAAGTTCCTCTCGTTTTGATCCTCTCTCGGTGACTCTCTGTTTCCCGCTCTCCGATACTCCTTCCTCTCCCTCCGCTATCTCTCCACTATTGTTTGTTAATAATTAAGGGATTAGACATGTTCTCTTTTATGAGAAGAATGAATTGGAGCGGACCGCTCACTCTGACGCTGTAAAAAGGGGCTTAATTATCGCGAAGAGTCATTGGAAACGTGAAACCGCGAAACTCGACTTGGGTGAGAAAAAACAGGAAGGAGTTTGCAGAGAACATGTCagaaatttcaatatttttgtttcgtttctttttCAAATGCTCAACACGAAAACGCTTACACAATGAAACATATCTCTAAAGTCATTATTTGTATGAAAAAGGCTACAAAGTAAGTTAAATGACtcttttaagaaaaagaaaaaaacacatttacttttatGCGCATTACCCAACGATGCTATCGTACTAACACAGAATATTAGCTTAGAGGTGCAAAACTGAACAAACTACTGTTAcgtcatctttaaaaaaaaaatgcaaaattcaaaaaaatatatatttcgtTTGTCTTTAAAAGATATCAGAGgtcttaattgtttttaataattattatttggacTATTATGAtcgttgttattgttattattattattcttactgttattataattgtaaatgttataaattgtaTACTTCCCATGCTTTAGTTTTACCAGTAGAAACAGCCGTGTACCCacttttctctcctctcttcatTCTCTTCTGTCCTTCTTGATCCTCTTTGTGTCTTTCCTTCTAGTTGTCCGTCTCCTCTTCCGTCTTTCACTTCCTGTTTATTTTGTAGTCTTTGCGTCGCTGTTGATATAGCTAACTGTACATCTTTATAGGGGAAAGATACCAAGCacgacaaaataaaaaatacttaaagaT

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
K06783 CADM4, IGSF4C, TSLL2; cell adhesion molecule 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167042 lncRNA downstream 77397 15413946 ~ 15428662 (-) False G113136
TU167091 lncRNA downstream 85632 15418906 ~ 15420427 (-) True G113151
TU167092 lncRNA downstream 85632 15418906 ~ 15420427 (-) False G113151
TU167055 lncRNA downstream 93216 15407948 ~ 15412843 (-) True G113139
TU167043 lncRNA downstream 95046 15409331 ~ 15411013 (-) False G113136
TU167104 lncRNA upstream 118794 15665236 ~ 15672119 (-) False fxyd6l
TU167105 lncRNA upstream 118794 15665236 ~ 15672119 (-) False fxyd6l
TU167106 lncRNA upstream 118794 15665236 ~ 15672119 (-) False fxyd6l
TU167107 lncRNA upstream 118794 15665236 ~ 15671011 (-) False fxyd6l
TU167108 lncRNA upstream 118794 15665236 ~ 15672119 (-) False fxyd6l
XM_043260093.1 mRNA downstream 9646 15492948 ~ 15496413 (-) False rps19
XM_043260915.1 mRNA downstream 29855 15430820 ~ 15476204 (-) True bcam
XM_043260916.1 mRNA downstream 29856 15430820 ~ 15476203 (-) False bcam
XM_043261446.1 mRNA downstream 130757 15365188 ~ 15375302 (-) False LOC122360651
XM_043260918.1 mRNA upstream 84099 15630541 ~ 15639888 (-) True si:ch211-79k12.1
XM_043261882.1 mRNA upstream 94732 15641174 ~ 15646291 (-) True si:ch211-79k12.2
XM_043261883.1 mRNA upstream 94732 15641174 ~ 15646036 (-) False si:ch211-79k12.2
XM_043261019.1 mRNA upstream 113310 15659752 ~ 15666045 (-) True fxyd6l
XM_043261037.1 mRNA upstream 114492 15660934 ~ 15666045 (-) False fxyd6l
TU167048 other downstream 9684 15468480 ~ 15496375 (-) False rps19
TU167050 other downstream 9684 15468480 ~ 15496375 (-) False rps19
TU167049 other downstream 9684 15492821 ~ 15496375 (-) True rps19
TU167051 other downstream 10337 15468480 ~ 15495722 (-) False rps19
XR_006252733.1 other downstream 592413 14909325 ~ 14913646 (-) False LOC122359907
TU167155 other upstream 270537 15816979 ~ 15819086 (-) True G113203
TU167180 other upstream 311157 15857599 ~ 15861893 (-) True G113220
TU167269 other upstream 466522 16012964 ~ 16013751 (-) True G113275
TU167253 other upstream 592877 16139319 ~ 16141235 (-) True G113267
XR_006252800.1 other upstream 672219 16218661 ~ 16228466 (-) False atxn1b

Expression Profile