RNA id: XM_043261115.1


Basic Information

Item Value
RNA id XM_043261115.1
length 1863
RNA type mRNA
GC content 0.47
exon number 15
gene id csnk2a1
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 18558731 ~ 18565127 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCGCATGCGCGCTCCGAGCGTTTTTTTCCCTAGCAGCTCGTGAGGTATTGATATGCAGCCGTTCTCCAGTGCAGCATCCGCCATATTGTCTACCAGGAGACGCCGAGAGCATCTGGAGGGCCATGAGGAATGACTTATAGGATTGCTGTGTCTCCTGAATAAGCTCCTGGATGTCCTCTTTCATTCAAATTACAATCAGCCTATGCTCCACCATAAAGTCATCACACCTGCCTTCATCAGCTCCACCTTTCATTTGCTGCTTGGAGGAACCCTCCAAGGTGTTTCAGGGAATACCTTGTGTAGAATATGTCTGGCCCTGTCCCAAGTCGCTCTCGAGTTTACCCTGATGTAAACACACAGCGACCCAGAGAGTACTGGGACTATGAATCCCATGTGGTGGACTGGGGAAATCAGGATGACTATCAGTTAGTGCGAAAGCTTGGCCGGGGAAAATACAGTGAAGTATTTGAAGCCATAAACATCACTAACAATGAGAAAGTAGTTGTCAAAATACTCAAGCcagtgaaaaagaagaaaattaaaCGAGAAATAAAAATTCTGGAGAACTTGAGAGGAGGCCCCAACATAATAACCCTTTTAGACATCATAAAGGATCCTGTGTCCCGAACACCAGCGCTGGTTTTTGAGCATGTTAACAACACGGACTTCAAGCAACTGTATCAAACTTTATCAGACTATGACATCCGTTTCTACATGTATGAAATTCTTAAGGCTCTCGACTACTGCCACAGTATGGGAATAATGCACAGAGACGTAAAGCCACACAATGTCATGATTGACCATGAGCACAGAAAGcttcgTTTGATTGATTGGGGCTTGGCTGAGTTTTACCACCCCAACCAGGAGTACAATGTACGTGTGGCTTCCCGATATTTTAAAGGCCCTGAACTACTTGTGGACTACCAGATGTATGACTACAGTTTGGATATGTGGAGTCTTGGATGCATGCTGGCCAGTATGATCTTCAGGAAGGAACCATTTTTCCATGGACATGACAACTATGATCAgtTGGTTCGAATTGCAAAGGTTCTGGGTACAGAGGACCTGTATGACTACATCGACAAATATAACATTGAGCTGGACCCACGCTTTAATGACATTTTGGGCagACACTCCAGGAAGAGATGGGAACGGTTTGTGCACAGTGAGAACCAGCACCTGGTCAGTACTGAGGCTCTGGATTTTCTGGATAAGCTGCTACGTTATGACCACCAGGCCCGACTGACAGCCCGCGAGGCCATGGACCACCCTTACTTCTaTCCTATAGTTAAAGACCAGGGCAGAGGAGCACCAGCTGCAGGAATGGCTGCTAGTTCCACACCAGTCAGCTCTTCTAGCTTGATGGCAGGCATCGCCTCTATGACTCCGAGCACACAGCCCAACATCGGCAACATCAGCGCCGGCTCGCCTGTCATCCCTGCCCCGAACACAATGGCCACACAAGTGCCCACTGCCGCTGGAGCCCAGCCCTGAACACCACCTGCCCCAACATcccccctctctttctcacatCCCTctatccgtctctctctctctctctcttctatgGGCCTGCTTGGAATTGTGAATCAGTGGTGAGGGGGTGGGGGGGCATTGATTTCATTTGTGGTTATTTTTACGATGTTGCAAATAACACAGAACTAATGTTAAGttacgttttattttgttttcctcCTCAGTTGTTTAGGGGTTTGTGAACTCAAAGAAACCCATGATGTTTTTGCACCTGTCTGTGTGAGTTAGAAAAGCAAACGGGTGTGAGTTTTCACTCGCCGTTGACTGTTTAGAGAAACACTTAAATGTCCACCTGAAGAAggataataaaattaattttatttgtc

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K03097 CSNK2A; casein kinase II subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168638 lncRNA downstream 9792 18548188 ~ 18548939 (-) True G114231
XR_006252807.1 lncRNA downstream 14051 18528871 ~ 18544680 (-) True LOC122360486
TU168419 lncRNA downstream 183117 18373968 ~ 18375614 (-) True G114075
TU168395 lncRNA downstream 319462 18195515 ~ 18239269 (-) False lmna
TU168370 lncRNA downstream 363563 18164406 ~ 18195168 (-) False LOC122360777
XR_006252842.1 lncRNA upstream 122043 18687166 ~ 18688395 (-) True LOC122360941
TU168682 lncRNA upstream 174631 18739754 ~ 18740829 (-) True G114259
TU168713 lncRNA upstream 248097 18813220 ~ 18821088 (-) False rpz
TU168711 lncRNA upstream 248106 18813229 ~ 18821088 (-) False rpz
XR_006252755.1 lncRNA upstream 420280 18985403 ~ 18987922 (-) True LOC122360016
XM_043261118.1 mRNA downstream 876 18552637 ~ 18557855 (-) True zgc:194210
XM_043260629.1 mRNA downstream 38444 18492626 ~ 18520287 (-) True mroh1
XM_043260321.1 mRNA downstream 95405 18459745 ~ 18463326 (-) True scrt1b
XM_043261353.1 mRNA downstream 168593 18376664 ~ 18390138 (-) True dgat1b
XM_043260466.1 mRNA downstream 185814 18368344 ~ 18372917 (-) True gpr20
XM_043261486.1 mRNA upstream 928 18566051 ~ 18589702 (-) False ptp4a3b
XM_043261485.1 mRNA upstream 928 18566051 ~ 18589685 (-) True ptp4a3b
XM_043261483.1 mRNA upstream 928 18566051 ~ 18577162 (-) False ptp4a3b
XM_043260126.1 mRNA upstream 31833 18596956 ~ 18600264 (-) True ccn4b
XM_043260127.1 mRNA upstream 31833 18596956 ~ 18598977 (-) False ccn4b
XR_006252779.1 other downstream 38444 18492626 ~ 18520287 (-) False mroh1
XR_006252778.1 other downstream 38444 18492626 ~ 18520287 (-) False mroh1
XR_006252805.1 other downstream 191741 18357417 ~ 18366990 (-) False slc45a4b
unassigned_transcript_2159 other downstream 1568357 16990302 ~ 16990374 (-) True trnat-ugu_49
TU167506 other downstream 1876553 16680197 ~ 16682178 (-) False esrp1
TU168645 other upstream 84396 18649519 ~ 18650609 (-) True G114236
TU168660 other upstream 104558 18669681 ~ 18671245 (-) False LOC122360747
TU168665 other upstream 128789 18693912 ~ 18698316 (-) False LOC122360940
TU168666 other upstream 128789 18693912 ~ 18698316 (-) False LOC122360940
TU168710 other upstream 250093 18815216 ~ 18821088 (-) True rpz

Expression Profile