RNA id: XM_043261132.1


Basic Information

Item Value
RNA id XM_043261132.1
length 3073
RNA type mRNA
GC content 0.52
exon number 11
gene id LOC122360494
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 26878671 ~ 26888899 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGCCCGCCCCTTCCATGCGCTTCCCTCGCCTAATTAACATAACAGCCCCGCCTCCTCGCGCCCTTCACCACTTCATTTAAATTACCGCCCCGCCTCCTTCACGCGCTTCATCCCTCAACCTTCACAACCGTCCGAGGCTCGTTGGATTACAGACATATGGCTCAAAACATTAACGTCCCTTTTCAGATTAGTGCTCTTATTATTCTGTAAAAATTCcgccaaaaaagaaaagacggTTTACCTCAAATGCTCGCGATTTCTCCCGTGTGCACGTGAACTACGAGAACAGCTTAGGGGCTCGTGTCTGCCGTGAGCGGTTCGATTTCAACGCGGAGCCCCCTTGGGATCCTAGCTGATAGCTGGAGAGGTCGACCCCTGACCTGTCCCTTGGATATCGCTAGGACCCAAGAGCTCTGAGGGTTCTCATAAATAGGTGACCTGCTTTATGCCAGTCGGATCACGCATGAGTATGAAGGGAACTCCGGACGAACCACGCTTTTCTGTCGAGCTGCTGGAAGGAAGCGCGGCTCTCCGAGATGTGATCGACGAGCACATCCGCGATCAGACTCTCgCACCGAAGAGTGCGTTTTTTGTTGCCGATCTGGGGGTGATTGTGCGGCAGCAAGTTCGCTGGAGAACTAAAATGGACCGCGTCCGGCCCTTCTTCGCGGTCAAGAGCAACTGCAGCCCTGTGGTTGTTGAAATCCTGGCCGCGCTCGGCACTGGCTTTGTTTGTTCGAACAAgCTTGAGCTGGACTTGGTGAAGGGGTTTGGCGTCTCGTCTCAGGACATTATTCTCGGTGGCACGTGTAAACAGCTGTCCCATATCAAATACGCAGCTAAACACAACATCCCCCTCCTGGTTTGCGATAATGAGGCGGAGCTGAGGAAGATTGCTCGATGCCATCCCAAAGCAAAAGTGCTGCTGCTGTTGACATCGGAGAGCTGCTGCGACCGAGAGGAGACGGCCTTACCGTTCGGCTCCACGCTGAAGGACTGCAGACACCTGCTGGAGTGTGCCGGAGAGCTCAGCCTGACCGTCACCGGAGTCAAATTCAACATTCCCAGTTGTTGTCAGGATGCACAAGCGTTCTCCCGCGCCGTGTCCGATGCCCGCTGTGTCTTTGATATGGGGGAGGAGCTCGGCTTTGAGATGAGCGTTCTGGACATCGGCGGCGGCTTCGACGGAAGCGAGGCGCAGCTAGACGAGGTACTGCATTCTGCTGTATTCGTACCTTTTGCTTTTGCGTTTTTGTTTCTGCCCCCGAGCCTCGAGTGTTGTTTCCGCGTGCAGGTCAACCAGGCGCTGAAACCCATGCTGGACATGTATTTTCCTCTCTCGGCCTGCTTGGAGATCATCTCTGAACCTGGAGCTTTTTACGTGTCGTCTGCCTTCACGCTGGCCGTGAATATAATCGCCAAGAAAGCGGTGGCTCGTGATTTCCTTGATCGACCACACAatgCACCGTCTGCAAACGATGAGCCTGAGTTTCTTTATTGCATGAATGACGGGGTTTATGGGTCTTTTGCCGGTAAGCTGCTGCGTGGAGATTCGATATCGATGCCTTCGGTGCACAAGGAGGTGAGTCCAGAGGAGCCGCTGTTCTCCAGCAGCCTGTGGGGTCCGTCTGCCGATGATCTGGATCAGGTGGTGGAGCGGTGTCTGCTGCCGGAGCTCAGCGTCGGAGACTGGCTGCTTTTCAGCGACGCGGGGGCCGGCGGCGGTCTGGGGGCCGGAGAGGAAGCCCCACCGCCCGTCTTCTACAGCATCGCCGAACGTGACTGGCAAGAGCTTCGTAGCTGCGGCGTCGCTCTGGACGTGAGGATGAAGGATTTCTCTCTGGTACCTTGCTGCCTGCAGCCAGACACATCCGAGGCATCCGTTTCCACCCCGGCGTAGCGTAAACCACTCATCAATGTCGTCATTTCCACCGACTTCAAGCACTTAGGAACCTGGACTCTTTAAGAAGCTTCAGATGCTACCAGAGCAACTTCATAGTCATCAACCCGATGGATATAGGTGCAATTAGCTTTAACAAGCGGGCCTGTTGGCGTTTACAGCGACACTTAATTATATTTAAGccagttttataaatatatatacacatacagtatttctGCTTACTAATGGAATCAGTCGAGTTATTTATTAAAGCTGGAGTCTAGTTTCATGACGTCATCGGatgcttttaaagaaacatgcacttgttttttgttatttgtattagGAGTATGATGTTAAATCTGAACAATTGTGAACCGAGCGCTGTGGTGTGTCTTTGTGGGGAAAGTATAGTGGAAACTTTCTCAAATCGGAGGCCTAGAATGCACTTTAgttatagttcacccaaaaaatgaagaTCTGCTGAAGATGTACTCAACCGAGATGGAAGACATGTCATCGGTTTCAGCAACGGATGccctgcagcgaatgggtgccgtcagaacagctGATCAAAAACATCACGGTAATCCACTCCAGCCCATCAGCGAAGACGGGAGAAACGAAGTCGTCTTCAGGACGTTTTGATCTCTTGATCGAGAACGTCGTGGATTGTTGTGcatctcattctgacggcacccattcaccgcagagcagcCGTTCCTGCGCAGACGACTTTTGAACTATTCCTTCGGTTCATGCGAACGCAGGCGGTCTGGTTGTGCGCATTTGCACACGCTTGCATTGCCCGCGACGAGCCAGTTTAAACGGAAAGACGTGTGTGTGGCTGCGTTTCGTAACGCGGTGTTGCACGAAACCGGGAAGTGTCTGCTTTCACGCGCTTGTGTGTGCGTTTCAGGCGTGTCGTGCTGCGCGTTGGTTCAGCTTGACGCGCGTGTGTCCTGTCCGGGACGGCTCTGGTGTCGCGCAAGTATGTCTGAGAACGTGTCGAAGACGGTTTGAGCAAGTGCTGCTGGTTTGGAGCGAGGGGAAGCTGTTGAGTCGCTGTTTGAGTGAAAGCGATGAACTGCGCAACAGACATGAAATGTTCGTTCGGTGTCAGAGCAGGACTACGAACTGTTTACCTTTTCTTGACCAAGTTTTGCTGTCAATAAAATGGTATTAATGGC

Function

GO:

id name namespace
GO:0006596 polyamine biosynthetic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172333 lncRNA downstream 4311 26817032 ~ 26874360 (-) True G116666
TU172344 lncRNA downstream 59823 26816120 ~ 26818848 (-) True G116670
TU172260 lncRNA downstream 65697 26810317 ~ 26812974 (-) False G116632
TU172255 lncRNA downstream 65762 26810317 ~ 26812909 (-) True G116632
TU172284 lncRNA downstream 134882 26741576 ~ 26743789 (-) True G116648
TU172385 lncRNA upstream 265468 27153346 ~ 27213613 (-) True G116696
TU172391 lncRNA upstream 267217 27155095 ~ 27157490 (-) True G116700
TU172404 lncRNA upstream 351108 27238986 ~ 27240139 (-) True G116710
TU172405 lncRNA upstream 352737 27240615 ~ 27241091 (-) True G116711
TU172416 lncRNA upstream 411616 27299494 ~ 27307565 (-) False G116721
XM_043261921.1 mRNA downstream 9700 26822157 ~ 26868971 (-) False ubr5
XM_043262081.1 mRNA upstream 69763 26957641 ~ 26969940 (-) True LOC122361111
XM_043261716.1 mRNA upstream 106096 26993974 ~ 26998349 (-) True LOC122360878
XM_043262082.1 mRNA upstream 187626 27075504 ~ 27078615 (-) True LOC122361113
XM_043261977.1 mRNA upstream 292759 27180637 ~ 27204293 (-) False spire1b
XM_043261978.1 mRNA upstream 292759 27180637 ~ 27204292 (-) False spire1b
TU172337 other downstream 2061 26874398 ~ 26876610 (-) True G116668
TU172263 other downstream 65697 26810317 ~ 26812974 (-) False G116632
TU172257 other downstream 65762 26810317 ~ 26812909 (-) False G116632
TU172261 other downstream 65762 26810317 ~ 26812909 (-) False G116632
TU172308 other downstream 69525 26807120 ~ 26809146 (-) True G116654
TU172354 other upstream 66342 26954220 ~ 26955834 (-) True G116677
TU172373 other upstream 106289 26994167 ~ 26998359 (-) False LOC122360878
TU172454 other upstream 470829 27358707 ~ 27360829 (-) True G116745
TU172389 other upstream 632312 27520190 ~ 27579864 (-) True LOC122360079
TU172557 other upstream 735549 27623427 ~ 27627660 (-) False LOC122359885

Expression Profile