RNA id: XM_043261145.1


Basic Information

Item Value
RNA id XM_043261145.1
length 2161
RNA type mRNA
GC content 0.48
exon number 12
gene id celf3b
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 5877048 ~ 5900217 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGACGGTCCCTGCCCGTTACATCACGAGCGCTCGTGAGAGGGAGACACCGGTGACGTCACGCCCAGAGGAGCGAGAAACACGTAGTAAACCTCGCTGAATGAGACGCGAGGAGCGACACACGTGTGCTGCGAGAATAATCCGGGGCTCGCAACGCATTTCATATTAATAACAGACCCACCGGAGATGCTGGCCGGAGCTGTGCTTATACTGTGAGCTCGGTGGAAAAAAACCGCGAGAGGAGGCATCGTCCGAAGATCGTGATAAATAAAGACATCCCTGCAGatgaaCCGGCCCATTCAAGTGAAGCCTGCGGACAGCGAGGGGAGAGGAGaGGATAGAAAGCTGTTTGTGGGGATGCTGGGAAAGCAGCAGTCGGATGAGGACGTGAGGAAGATGTTTGAGCCGTTCGGGAGCATTGATGAGTGTACGGTACTGAGAGGACCGGACGGCACCAGCAAAGGTTGTGCGTTTGTGAAGTTCCAGAGTCACTCAGAGGCCCAGTCTGCCATTAATAGCCTGCACGGGAGCCGAACTCTTCCTGGTGCTTCGTCCAGTCTGGTGGTGAAGTTTGCGGACACCGAGAAGGAGCGCGGGATGCGGCGCATGCAGCAGGTGGCCTCGCAGCTCAGCATCTTCAGTCCAGTGACGCtcaattttaatgcatataatgCCTACACGCAAGCACTGCTTCAGCAGCAGGCTCTGGTGGCTCAGTCCTCGTACCTGTCCCCTGTGTCTTCAGCCGCGGCGGTGCAGATGCAGCAGATGGCAGCGCTCAATGCTAACGGCATCATAGCCGCCCCCATCACCCCCCTCACCCCCTCGTCAGGTGCGAATACTCCGCCCACTATTGCAGCCACGCCCGTCTCGGCTCTGCCTCCACCAATCGGAATGAACGGCTACAGTCCCGTACCACCAAACACCAATGGACTGCCAGCGTCGGAAATCTACACCAACGGAGTTCATCCGTATCAAGCCCAGAGCCCGGCGGCGGTGGCGGCGCTGGACCCGCTCCAGCAGGCGTACGCAGGCATGCAGCACTATACAGCAGCTTATCCCGCCGCGTACGGACTGGTGAGCCAGCCCTTCATCCAGCAGCCCGCCATCCAGGTCTCCCAGCAACAGCTgcagcagcagagagaagGTCCTGAGGGCTGTAACATCTTCATTTACCATTTGCCTCAGGAGTTCACTGACTCAGAAATGCTCCAGATGTTTCTGCCGTTTGGTAACGTCATTTCTGCAAAGGTTTTTGTCGATCGAGCCACGAATCAGAGCAAGTGCTTCGgcTTCGTGAGCTTTGATAACCCAGCGAGCGCTCAGACGGCCATCCAGGCCATGAACGGCTTTCAGATCGGCATGAAGAGACTCAAAGTGCAGCTGAAACGACCGAAAGATGCCAACAGACCCTACTGAAACACAGACGGGATGGAGATTATCGAAGCGTTCACGCAGCAGACGGACTCCAGACGCTGAGCGGTTACCTTGCACACTCagacgtgtgtgtatatgcaaaGGACAAATAAATGATCATGTACATAATTCACACGCATTCAAACGCACATGCTCACAGAGTTATGGAAAGATGTCAATggtattaacacacacacacacacacacacacacacacacacacgcacacacaaacatgctacTTCATATGGACCTTCTTAGCGCCACAAATGTATAAAActatcatttttaatacaaaatgtaaaaaaaaaaaaaaaataataaaaagagaagaCCAGCCACAGTTAATGACCATAATCAGGTTCAAATAATTaagcttaaaataaactatttaaagaaaataagaatAGTTGCATTAAAGCAAAAGACGATagttagtattattattgtaagaaaaaaaacatcttaagatttctactttttcattatatatgtgATGTAAGAGGACTCAGGAAATTCTGGgcaagttttaatattttatctttttatttatctatttattcatatttggaaaaaaaaaaaaaaaaaggtcttttggttttcatgttttctaGAGAACTACATTAAAGCTGTTGTAAAACTTTGTAACTTATTGAAATATGAATTACAAAGATGATATTTATGTCTGAAATTTTTTGATCAAACTTTtgtttctaatttaaataaaataaaggtattaAAAGAAAC

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162695 lncRNA downstream 24287 5852432 ~ 5852762 (-) True G110106
TU162691 lncRNA downstream 60176 5815560 ~ 5816873 (-) True G110102
TU162688 lncRNA downstream 63365 5809971 ~ 5813684 (-) True G110100
TU162689 lncRNA downstream 64528 5809971 ~ 5812521 (-) False G110100
TU162682 lncRNA downstream 92820 5783296 ~ 5784229 (-) False si:dkey-283b15.2
TU162868 lncRNA upstream 2367 5902577 ~ 6184069 (-) False LOC122359839
TU162879 lncRNA upstream 97411 5997621 ~ 5999361 (-) True G110206
TU162905 lncRNA upstream 218575 6118785 ~ 6119767 (-) True G110221
TU162910 lncRNA upstream 236897 6137107 ~ 6207805 (-) True G110224
TU162914 lncRNA upstream 239184 6139394 ~ 6208668 (-) True G110227
XM_043261014.1 mRNA downstream 3991 5853476 ~ 5873058 (-) True cers2b
XM_043260635.1 mRNA downstream 26835 5834157 ~ 5850214 (-) False arnt
XM_043260030.1 mRNA upstream 2830 5903040 ~ 5948798 (-) True LOC122359839
XM_043260033.1 mRNA upstream 348709 6248919 ~ 6261997 (-) True tars2
XM_043260029.1 mRNA upstream 363294 6263504 ~ 6279577 (-) False rprd2b
XM_043260028.1 mRNA upstream 363294 6263504 ~ 6279575 (-) True rprd2b
XM_043260027.1 mRNA upstream 379499 6279709 ~ 6339496 (-) True LOC122359836
TU162692 other downstream 58687 5817064 ~ 5818362 (-) False ndufa3
XR_006252935.1 other downstream 517370 5359510 ~ 5359679 (-) True LOC122361376
XR_006252797.1 other downstream 631588 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other downstream 631589 5235646 ~ 5245460 (-) False vegfaa
TU162095 other downstream 1781545 4094757 ~ 4095504 (-) True G109724
TU162864 other upstream 44011 5944221 ~ 5948789 (-) False LOC122359839
TU162885 other upstream 128998 6029208 ~ 6034777 (-) True G110208
TU162893 other upstream 196465 6096675 ~ 6099927 (-) True G110215
TU163014 other upstream 1181752 7081962 ~ 7083524 (-) True G110303
TU163032 other upstream 1295280 7195490 ~ 7201381 (-) True LOC122360222

Expression Profile