RNA id: XM_043261154.1


Basic Information

Item Value
RNA id XM_043261154.1
length 4638
RNA type mRNA
GC content 0.52
exon number 22
gene id smg5
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 19078953 ~ 19094738 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTGCGGTGGGAGGGGGAAAAATGGCCGCTCGCGGAGCGACACTCGGAATGATGAGCgacaacaacacaaacacaacccctTCAAAATGTGACAGCTGACCCGAACCGACACCAGCACACACACCGGCTTCCGAACGGATGGGTATCGCGGCCGGTGGCGGGGGAGGCCAGGAACGACAGCGTTTGTGTTCAAGTTGTAATTTGAAGGAAATAGGTGAGTTAGCTAGCCTGCTAACGTTAGCCGCGCGCTAAACTGGAGCTGAACGAACTAGAACCAGAACAAGATACACGAAAACAGACCACAGCAGCCGCATTATCACTTCTAGGATGAGCGGACCGGGTCAAGACAGCGAGCCAGAGGCCAAGGTGCTTCATATTAAACGGCTGTACAGGGCTGTGGTGGAAACGGTGCACAAGTTGGATATTATAATCAGTGGCAAGTCATCATATAGGGAAGTCTTCAAACCTGAGAATATCAGTTTGAGGAACAAATTGCGGGAACTTTGTGTAAAGCTGATGTTCCTGCACCCTGTGGACTATGGACGCAAGGCAGAAGAGCTGCTGTGGAGGAAGGTCTACTATGAGGTCATTCAGGTCATCAAGACCAACAAGAAGCATATTCACAGCCGCAGTGCTCTGGAGTGTGCCTACAGGACTCATCTGATCGCCGGGGTCGGCTTCTTTCAACACCTGCTGCTCTACATCCAGTCACACTATCAGCTGGAGTTACAGGACTGCATCGACTGGACACACGTCACCGATCCACTCATCGGCCGTAAGAAGCCAGTCTCAGCCACCCCTAAAGAGATGGAATGGGCCCAGATGGCGTGTCACAGATGCCTTGTGTACTTGGGAGATCTCGCGCGGTACCAAAATGAACTGGCGGGAGTGGAGGCAGAGCAGCTGGCGGAGCGCTTTTATCACCAGGCCTTGTCTGTCGCACCTCATGTCGGCATGCCGTTTAATCAGCTGGGTACGCTTGCTGGAAGTAAATTTTATAATGTGGAGGCTACTTACTACTACTTGCGCTGTATTCAGTCGGAGACTCCCTTCGATGGCGCTTATGGGAATTTAAAGCGTCTGTTTGATAAGGCAGCCAAGATGTACCACCAGGTGAAGAAACAAGAGATGAAAAAACTTTCACCATCACGCCAGAGGTCAAAAGACATCAAAAGACTGCTGGTGAGCTTCATGTACTTGCAGAGCCTGCTGCAGCCCAAGAACAGTCTGATGGAGACGGAGCTGACGTCACTGTGCCAGTCTGTGCTGGAAGACTTTAACCTGGTGCTGTTCTACCTCCCACTTCCTGCTCACGGCAGCCAGTCAGCCagcgaggaggaggaagagcacGACTCCGTTTGCTCTGTGCTTCCTGACAGCCTCATATTCAAGATGGTTGTGACTTGCCTTATGGTGGTGCACAGTTTGAAAAGAGGGGCTTCAAAACAGTACAGTGCCTCCATCGCTTTCACGTTGGCTCTGTTCTCCCATTTGGTCAATCATGTCAACATTCGACTGCAAGCTGAACTggaggagggagagagtgaTGTCCCACCACTGCACACTGATAAAACTGATGATGCTGATGCCAGAGATCACGGTAGTGCTGCTCTCTCAGAGGAGAGAACCCTGCAGAACGGCTCCCTagaggaagatgatgaagaagaggatgaggagAAGGAGAATGAGGAAGATGAGCCTAAGGGGAACGGAAGGACGACGGGGACAAAGAAAAGcctggagaaaaaaagatcaGCCGAGGAGACGCAAAAGCAGAAGCGGAAGTTTTCACGGCTCTCCATGCTTCGCCGCAGACGCTGTGCTCACAAGGAGGACGAGAGCGACCTGAGCGAGGGATTTGAGAGTGACgaagaagaggatgaggaaggcGGTGGTCCTGTCGATGGTCTGGGGGCCGCTAGGGTCCAGATGAACTCTTTAGGAAGGGAAGGACGGAGGGGACCGCTGCCAGAGGATGGCAGCTGGGAAAGCGGTTCGGAGGAGGACGAGGGCGGCACGGCTTTTGACGTCGAGACGGACTCTGACATGAACAGTCAGGAGTCTCGTTCAGACCTCGAAGACATGGAGGACGCTGAGCATGCGccacaacaacagcagcaacagcaaGAGGAAGATGAGCAACCGCAACCGTCTCGGGAGGAAAACGCTACCCCTCCAGTAACCAACGGCCCCTCAGTGTCTAATGACGCCAGCATCAGCAGCAACCTGCAGGCCATGTCCTCTCAGCTCTTCCAAGCCAAACGCTGCTTTCGACTCGCCCCCACTTTTAGCAATGTACTGCTCCGCCCCGCATCTACCACTAACCCCGCCCCAGTGCAAGAAGCCACACCTCCTGCTGAAGAAATATCAAGAAAAAGTCCAGAGATTGCTAATGGAACCAATGACAATGATCCTGACTCTGATTCCGAGGGCAGTGAGAACAGCAACCATTCGATCCACAGTGAGAAAACCCTTTCTGAACGACTGGAGATACTGACCAATCAGGGTCTCATCCAGGTGGTGAAGGTCTTCTTGGATTGGCTGAGGACGAACACTGATATCATCCTCATGTGTGCTCAGAGTTCTCAGAGCTTGTGGAACAGACTCTCAGTGCTGCTTAATTTGCTTCCTGAGGGCAGCAAGATGTTAGAAACAGatTTAGGTCTGAATAAGGATGTGACAGAACTGCTGAATGAGTGTGAGCAGCCTGGCTTGGTCCAGACGCTGCTGCTGCCAGAGGATCTGGCCCTCCACCACCTTCCTGCCCTCAGCGTAGCCCATCGACGCCTGGACTTCACTAGCCAGAGACCCCCTCTCACGCCTCTGGATGAGTGTGTGGTGCGCGTGTGCTGCATTCGCAGCTTTGGTCACTTCCTCACAAATCTCCAAGGCAACGTATTGCACTTCAACCCGGAGGCGGGCATCTTCACCagcatcagccaatcagagcaggaCAACCTGGTTCAGCAGGCCAAGGCCCAGTTCCGCATGGCGGAGGAGGAAGCTCGCAGAAACCGGCTAATGAGAGATATGGCCCAGCTGCGCCTACAGTTGGAGGTCTCTCAGCTGGAGGGCAGTCTGCAGCAGCCCAAAGCGCAGTCCTCCATGTCTCCTTATCTGGTGCCAGATACCGCGGTTCTCTGCCAGCACCTGGGGCTGCTCAGACAGCTGGCTGCCAGCGGctgcttcatcatcatcatccctCGCACAGTGATTGACGGCCTGGATTTGCTGAAGAAGGAGAACTCCGGAGCGAGAGATGGAATAAGATTCCTTGAGACAGAGTTTCGGAAGGGGAACAGGTATATCCGCTGCCAGAAAGAGACGGGAAGAAGCTTTGAGAGGGACAAATTAAAACGACAGGACATTGAAGCCTGGCACCTGTATAAGATGGTGGACAGCTGTCGCCAGCTGACGGGATCTCAGAGCAGTGGAGATGAAGACACCGCTGGCATGGTGACCATTCTGACAGGACACTCACTAGAGGAGCTGACTGAAAGATCAGCTTCCATGAAGGCGGCTGTCCAGGTGGTGGCAGCAGCAGGCATGGAGCTGAAGAACATCACCGACTTCTACCGGCAGTGGAAAGAGATGGGCTGAGAGACGGCGTGGGACGCAGGGGGTCAGCTCTGCATTCGGCTGATCGCATACTCACTCCccctcgctcgctctctctctctctctctctcgctctctctctctctcccactttactgctctgtctgtgtctgcatctccaggggaaaaaaaaaaactcaaaagatgGAGGAGGGTTGGAAGGAGGGAGGGTGCAGGAAGCGTTCGGAGAAAAGAGAAGTCGGAGGAACGGGGGGCTTTAAGCTACAACAGCGCATCCTCGACCCCGACACGGGGGGGTTAAAAGAAGCTACAGGGTGAAATCGCTCAGTTTAAGTGCCCCCGACCGCGCCATAACCAAGCATATATACCGATGAAATGAGTGTATATGTTTCGAGAGAGAGAAATACGAACATTCATGTGCATAAACGTCAAAAACAAACCCTTTCATCGAAATATATAGaacaatgtttttgaaatctttttttattttggtctcCATGGGGTTGCACTGCCACATGGACGTCTGTGTTTGGTGAGCACAGAACAGAAATCATCCCGTCTAGCGTTTACCCTTGACTCCTAGGGTTGCGAAGGATTCGGGGGTTTAGGGTGTACACTTCTTTTTGATGATTTGTTCTTTCTAACGTGGCTTCcccaccgtttttttttttttttgtttttttctttttgctgtgtAACTCTGTGATTTAATGTATTGTGTTTATCTGTGTATGAGCAGGAAGTCTGGCAAATggttgcttttatttgattttatttttgtatgtcgTATTGCCTTTGTACGCTGTGCTGAACACACGCAGGGATGAGGATGGGTGTAGAGAACCGTCGCAGACATCACCCGGCTCCTGTCGCACTCTTCTGTGCTGACGGAGGTGGAAGTGTTTCTGCTCGACTCTCAACGCGAGATTACTACTCGGCAAATCTAGTCCCAGTCATTCGCCGTCACATTCTCCTAGTAATTGTCCCATATTGCACAACGCAAAGGAATCCAATGTACGTGTGAGGCAGtgcattaaacaataaaatgatttcatttaa

Function

GO:

id name namespace
GO:0009790 embryo development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168880 lncRNA downstream 15782 18992862 ~ 19063171 (-) True G114399
TU168882 lncRNA downstream 37187 19012655 ~ 19041766 (-) True G114401
XR_006252756.1 lncRNA downstream 91027 18985829 ~ 18987926 (-) False LOC122360016
XR_006252755.1 lncRNA downstream 91031 18985403 ~ 18987922 (-) True LOC122360016
XR_006252754.1 lncRNA downstream 91034 18985403 ~ 18987919 (-) False LOC122360016
TU168924 lncRNA upstream 111381 19206119 ~ 19262830 (-) True G114430
TU168954 lncRNA upstream 185690 19280428 ~ 19283527 (-) False G114458
TU168955 lncRNA upstream 185690 19280428 ~ 19283527 (-) True G114458
TU168959 lncRNA upstream 198255 19292993 ~ 19294087 (-) True G114462
TU168929 lncRNA upstream 210768 19305506 ~ 19307497 (-) True G114433
XM_043260300.1 mRNA downstream 4143 19056157 ~ 19074810 (-) False paqr6
XM_043260299.1 mRNA downstream 4754 19056157 ~ 19074199 (-) True paqr6
XM_043262108.1 mRNA downstream 98327 18977536 ~ 18980626 (-) True rbm8a
XM_043260889.1 mRNA downstream 102260 18954329 ~ 18976693 (-) False otud7b
XM_043260783.1 mRNA upstream 1017 19095755 ~ 19195429 (-) False syngap1b
XM_043260784.1 mRNA upstream 1017 19095755 ~ 19195425 (-) False syngap1b
XM_043260781.1 mRNA upstream 1017 19095755 ~ 19195424 (-) False syngap1b
XM_043260780.1 mRNA upstream 1017 19095755 ~ 19195424 (-) True syngap1b
XM_043260782.1 mRNA upstream 1017 19095755 ~ 19195423 (-) False syngap1b
TU168710 other downstream 257865 18815216 ~ 18821088 (-) True rpz
TU168714 other downstream 257865 18815216 ~ 18821088 (-) False rpz
TU168715 other downstream 257865 18815216 ~ 18821088 (-) False rpz
TU168665 other downstream 380637 18693912 ~ 18698316 (-) False LOC122360940
XR_006252818.1 other upstream 322224 19416962 ~ 19421094 (-) False cd22
TU169372 other upstream 1072057 20166795 ~ 20167614 (-) False G114715
TU169487 other upstream 1347227 20441965 ~ 20452450 (-) False G114793
TU169489 other upstream 1347227 20441965 ~ 20452450 (-) True G114793
TU169673 other upstream 1557239 20651977 ~ 20653574 (-) True G114901

Expression Profile