RNA id: XM_043261173.1


Basic Information

Item Value
RNA id XM_043261173.1
length 2055
RNA type mRNA
GC content 0.49
exon number 2
gene id hoxa10b
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 11633490 ~ 11636603 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGCTGTTGGAGCAATTACAGTGTATCATAAAGGTTTACTATTTTAGCACTTGATCTCCTTTTCGATACCTTGTTGCTTTTCGGTTTTATATAGACTACGCGGCTCGCGGGGTTCGCGGCTAAGCGGCGGCGTTAACGAAGCCAGCGGTCCTAAACGTAACGTGAAATTCGGTTTTTATTcgtttatattttcaaaaacgaCCGATCGGGTTTATGTAGATTCgactttaccaaaaaaaaaaaaaaatctagcagCTCGAAAAAGATACGGGACGCGGGGGTTACGCGCGCGCGGAGGGAGGAGTCAGCGGCGCTCGTTGCGATTTAATTGGCTGTTAGCTCACACTGAGTTGTGTAGTTATCAGTAATTATATTCAGCATGTTTTGCACAAGAAATGTCATCCAGAAAGGGCAATCTTCTTCCACCGTCAAATTATACCACGAAGATGTCATGCTCCGATAGTCCATCTGGAAATTCGTTTCTGGTAGACTCCCTGATCCACGGAAGGGCCGAGGGAAGCGGACACTACTACCAAAACAGCGGAGTCTACTTGCAGCCGGGCTCCGAGTATTCTTACGGACTGTCTAACTGTGGCTATTTCTCTGGACTCAAACGGAACGAGAGCAATTCGCAAAATGCGGTGCCTACGTGCGGGCCGTACCAAGGCATGGAAACGTGGCTGGAGACGTCGAGGTCCTGTCGCATTGAACAGCCTAACAACCAAATTGCCCCGCGGTCGTTCTCGCCCGCCATAAAAGAGGAAAACTCTTACTGCTTGTACGAGTCTGAGAAGTGTCCGAAAGATAGCGTCACGGAGGACATATCGTACTCCCGGCTGACACCGAACTCGTGTCCGTCTGGCAACAACAACGGCTGCGTTCCGGTGCCCGGTTACTTCCGTCTGTCTCAGACGTGCGCCACATCGAAAGGCTTTCCAGACAACAGCCAGTCTGTAGCGGCtcacgctgctgctgctgctgctgctgctcagCGCTCTGCCCGGTTTGACAGCTCTCTTTCAGCCATAGGAGCAGAAGCTAGCAGGGAAGAGAACGACGAGCCTCCCACATGCGCACCATGCGCCCCGGCGAGAAACAAGGAGCTAAGGGGGTCCACCGGCACCGCTTCGTCTCCCGAACCACCGGACAGCCCGGAGAAGGCGGTCACTGTCGCAAAAGGAGATAACAAAAGCGACAACACAGCTAACTGGCTGACGGCGAAGAGCGGCCGTAAGAAGCGCTGCCCCTACACCAAGCACCAGACTCTCGAGCTGGAGAAAGAGTTCCTCTTCAACATGTACTTGACGCGAGAGCGGCGCCTCGAGATCAGCCGCAGCGTGCACCTCACGGACAGACAGGTCAAAATCTGGTTTCAGAACCGGCGGATGAAGCTGAAGAAGATGAGTCGAGAAAACCGAATCCGAGAGCTGTCGGCCAACTTCAGTTTTTCGTGAAGCCCCCCTCGCTTTGCAGATCTCTGGCGCCCTCCTCCACCGGCGGCAGCCTACTTGCCCCAAACCGTCTCCGTGGGCGCGTGTGTGCGTATATGACTTGTGCAAGATACTATTGATAACTTATTGTGTGTCGTATACTGTTGACGTTTTTATCtgtttatgtataattttatttgacaaGCCAGTCGTCATAACATGTCATGGTTATTTATAAACTGTCGGGAGTACTTCACTGTAAAAGCGAGGGAGGAAAATATCGAATGCTCGAGGTGTTCATTGTACATAGCCTTCAGactatattgtacatttattgtatataacTGCGGTATCTGCATgttgtaataattataactaTTATGAAAGCGTTTTTAAATAACAACGACGCGTTTCTTCTAAGTACGACCTTGTCGGGTATTTGCTGTTCTAGGCATAAGTGGAAAAAAATCGGTAAAATGTAGAAACTTTTAAACATGACGGGACTTCTTGTGTTATTTTAACAGCGCCATCAAATGTATCACCTTTTTGGAAACGTAGGCTAAAGAGATGTAAATTAATCATTCGCACATGGCAGAAAATTAATAAAGGCATGTACCTAAACTCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K17443 HOXA10; homrobox protein Hox-A10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252859.1 lncRNA downstream 63753 11562878 ~ 11569737 (-) True LOC122361126
TU164642 lncRNA downstream 89158 11543916 ~ 11544332 (-) True G111516
TU164633 lncRNA downstream 144663 11487682 ~ 11488827 (-) True G111508
XR_006252826.1 lncRNA downstream 152263 11480106 ~ 11481227 (-) True LOC122360676
TU164553 lncRNA downstream 299828 11333175 ~ 11333662 (-) False LOC122360600
TU164699 lncRNA upstream 26315 11662918 ~ 11666274 (-) True G111559
TU164700 lncRNA upstream 26315 11662918 ~ 11666274 (-) False G111559
TU164770 lncRNA upstream 137316 11773919 ~ 11774181 (-) True G111623
TU164772 lncRNA upstream 144184 11780787 ~ 11781172 (-) True G111625
XR_006252803.1 lncRNA upstream 147092 11783695 ~ 11784334 (-) True LOC122360397
XM_043261175.1 mRNA downstream 146 11629099 ~ 11633344 (-) True hoxa9b
XM_043261171.1 mRNA downstream 2585 11619513 ~ 11630905 (-) False hoxa2b
XM_043261170.1 mRNA downstream 11541 11619513 ~ 11621949 (-) False hoxa2b
XM_043261169.1 mRNA downstream 11713 11619513 ~ 11621777 (-) True hoxa2b
XM_043261174.1 mRNA downstream 19232 11598331 ~ 11614258 (-) True skap2
XM_043260441.1 mRNA upstream 2402 11639005 ~ 11641509 (-) False hoxa11b
XM_043260440.1 mRNA upstream 2402 11639005 ~ 11641509 (-) True hoxa11b
XM_043261455.1 mRNA upstream 10247 11646850 ~ 11648869 (-) True hoxa13b
XM_043261454.1 mRNA upstream 16610 11653213 ~ 11662232 (-) True hibadhb
XM_043261757.1 mRNA upstream 50692 11687295 ~ 11704828 (-) True jazf1b
TU164609 other downstream 221713 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 347058 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 750279 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 767062 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 885190 10746793 ~ 10748300 (-) False LOC122361037
TU165859 other upstream 2017457 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 2597951 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 3272722 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 3831877 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 3831877 15468480 ~ 15496375 (-) False rps19

Expression Profile