RNA id: XM_043261174.1


Basic Information

Item Value
RNA id XM_043261174.1
length 1435
RNA type mRNA
GC content 0.45
exon number 13
gene id skap2
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 11598331 ~ 11614258 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGTCTAATTTGAATAGTGGTTTCTGCAGGGCAGGCTATTGCTTCTTCCGTATTTCACAGTCCACTAGCAACTTCCGTGTTTCGAAGGCTATCTAGCTGGGTCAAGCGGTTCATCACAATGAGGTCCATCCCGGAAGACTTAACGACGCTCATTTCAGatCTGGAAAGTTTTTTAACCGACGTCCTTAAAGGGGAGAACTTGAGCAagaaagcaaaagagaaaaaggacGCCTTTATCAAGCGCATTAAAGATGTGAAAACGAGcTACTCTCAAGAATTCAAGGACAAACGAGACGAGGAGTTGCCAGAGCCTGACGAAGCAGACACCAACGACGGAGGATCGCTGCAGTCAGAGCAGACTGACAGAGATGAGGAAAGCGCTTATGACGGAGTTCAACAGTCTCCTCCGGTGGCAGCTCAGGACCTTCAGTCCATTTTAAAGAGTGGCTATCTGGAGAAGCGCAGAAAGGATCACAGCTTCTTTGGAAATGAATGGCAGAAGAGATGGTGTGCTTTAAGCAACAATATATTCTACTACTACGGCAGTGAGAAAGATAAACAGCAGAAGGGAGAGTTTAATATTGTCGGGTACACAGTCAAAATGAACAACACCCTGCGGAAAGACGCAAAGCGGGATTGTTGCTTTGAGATCTCCGCTCCAGACAAGCGTGTATATCAGTTCTGCGCTGCATCTGAGAAAGATGCAAAAGAGTGGGTGGAGCACATTGACTTTCTGATTAAAGACATGGGTGGAGTCATTCCTGAAGATGAAGAAGAGTATGATGACTGCTTACCTATGAACCAAACAGCCAGCCATCCTGCACCTATTGATGATGACATTTATGAAGAACTCCCAGagGAAGATACACCCCAACCTGTTAAACCAGCAGTGACCCTGGCCAGCAAACCCCCATCACCATCTACCCCTGTGACAGCAGTGAACAAGAGCACAGACTACGCCAACTACTTCCAGGGCTTGTGGGATTGCGCTGGAGAGCATCCCGACGAGCTGTCCTTCAAGCGAGGAGACACCATCTATATCCTCAGCAAGgagtACGATATGTTTGGATGGTGGGTGGGGGAGATGAAAGGGACCATTGGAATCGTGCCTAAAGAGTATCTTCTTGAACTGTATGTGCTGTAAAGGGGTCTGAGACACCTCGGATGGCCTGCTGTTGTAGCTTCATGTTCCACAAATTCCTTTCTCCACTGTTTCCACTGTTCTGTGTgagagtttatatatatatatatatatatatatatatatatatatataaagcaaactGCCAGCTCAAatacaaaaagctttttttgttgttgttaatgatTAAATTATCACGTGCCCACCGAGTGAATGTAagcctttttttgtctttccagACATTTATATGTGGGTCAAATCTGTATGAAATAAAGCCTGTGCGTTCGAAGTCTC

Function

GO:

id name namespace
GO:0042113 B cell activation biological_process
GO:0016310 phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016301 kinase activity molecular_function

KEGG:

id description
K23471 SKAP2; src kinase-associated phosphoprotein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252859.1 lncRNA downstream 28594 11562878 ~ 11569737 (-) True LOC122361126
TU164642 lncRNA downstream 53999 11543916 ~ 11544332 (-) True G111516
TU164633 lncRNA downstream 109504 11487682 ~ 11488827 (-) True G111508
XR_006252826.1 lncRNA downstream 117104 11480106 ~ 11481227 (-) True LOC122360676
TU164553 lncRNA downstream 264669 11333175 ~ 11333662 (-) False LOC122360600
TU164699 lncRNA upstream 48660 11662918 ~ 11666274 (-) True G111559
TU164700 lncRNA upstream 48660 11662918 ~ 11666274 (-) False G111559
TU164770 lncRNA upstream 159661 11773919 ~ 11774181 (-) True G111623
TU164772 lncRNA upstream 166529 11780787 ~ 11781172 (-) True G111625
XR_006252803.1 lncRNA upstream 169437 11783695 ~ 11784334 (-) True LOC122360397
XM_043261679.1 mRNA downstream 97118 11493099 ~ 11501213 (-) True LOC122360822
XM_043260630.1 mRNA downstream 144822 11437373 ~ 11453509 (-) True LOC122360214
XM_043261369.1 mRNA downstream 211338 11336356 ~ 11386993 (-) False LOC122360600
XM_043261171.1 mRNA upstream 5255 11619513 ~ 11630905 (-) False hoxa2b
XM_043261170.1 mRNA upstream 5255 11619513 ~ 11621949 (-) False hoxa2b
XM_043261169.1 mRNA upstream 5255 11619513 ~ 11621777 (-) True hoxa2b
XM_043261175.1 mRNA upstream 14841 11629099 ~ 11633344 (-) True hoxa9b
XM_043261173.1 mRNA upstream 19232 11633490 ~ 11636603 (-) True hoxa10b
TU164609 other downstream 186554 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 311899 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 715120 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 731903 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 850031 10746793 ~ 10748300 (-) False LOC122361037
TU165859 other upstream 2039802 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 2620296 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 3295067 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 3854222 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 3854222 15468480 ~ 15496375 (-) False rps19

Expression Profile