RNA id: XM_043261276.1


Basic Information

Item Value
RNA id XM_043261276.1
length 4029
RNA type mRNA
GC content 0.41
exon number 18
gene id kel
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 8653833 ~ 8664175 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tatttagtgTTGGTGGTTCCTCGAGTTTAACTTGGGTGACTTGTTTTGGAACGTGAGGCATCTTCTGGCCCTCACAAATTTATAAAATGGTGAGATTTGGGAAATGTTTCTAGAAATGCCCCATTTATGTATGTGTTAAAGAGAGGGGTCTTGTGGGAAGCCAAGTCATTACATGTTTATCAGTCAGTGAAAGGGTGAACAGAGAGCGTGATGAGGGAAGATAGTAGTTGAATGACTTGTGGTTGACGGAGGAGAGATAGAAAGAGGAACGGTGTGACGAAATAGAAAGTTTCGCTGGAAGAACATTATGTAGGAAGAATCCTGACCAAACGGAAATAAAAGAAGAACAGGATGGATGATAGCCCAGCTGTTCATCAGGAAATGCTCACAACATCAGAGGAACAGTCTCAACCAAATCCAGTGGGCTGCAACAAGTACCGCAGGCTCCTATTGGTTGTCTTTTCCCTCTCTATCTTTTCACTTGCATTAGGTTTGGGAGTGTATTCTCACCTGCAAAAGACTGCGGACCCCTGGACATCACAATGGAAATCAGCTGCTCCTCCTTGCCTTTCTCCTGCCTGTGTAAGAGCATCAGAGCATTTTTCTACTGCCATGGATCCCTTTTCTCGCCCCTGTGACTACTTCCTGTTTGCCTGTGGGACAGGTGGATCTTCCACCAGTGATAAAAGACACAGAGTCAAGGGGATCCACAGTGAAGACTTTGGAGAACTggacaaaaaaagggaaatgagGATTAGAAGAGAAACAGATGTTCAAGGAAACAGTACTGGAGGGCTAGTCAAATTTCCAGACAGAAAGGACGCTTTACTGAAAACTGTTAGAGAAATATTAGAGGATCCTGAGGAGGGCGTTTCTATGAGTGCAGCGGAACGGAAAGCAAAGAAATACTTCAAGACATGCATGGATGCAGAATCCCCAGAGAAAGTGGGTTCGAAACCCTTCCTCGAACTACTCCAGCAGTTAGGTGGTTGGGCAGTATCAGACGGATGGAATCAGACAGATTTTAACACCACCCTCGCCCTGCTGATGAGCCAGTACTCCACATTTCCTTTCTTCAGCGTGTATGTAGGGTCAGACCCTGATGAAGAGCAAACGGCTTCTGATCGACTCTACATACAGATTGATGAGCCTCACTTTCAGTTCCCTATTGACTGGAATAGCAAGACACAGAAATCCAAAGCAAGTACTCGGTATTTGCGTCCATTCTACATGTCATGTGGTCAGTACTTGAACCTCTTGGGTGTTCCCTCAAATAAAGTCACTCAGCACTGCGGCCTTTACATATCTCTATCCACAACTCTGGCTCTATTCACGGCCCCTCTCCGATACCGCCTCAGTCAGAAGTTACTTTACAACAGAATTACCATCCAAGAGCTACAGACTCTGGCTCCAGCCATTAATTGGCACGCTTGCCTACAAGCCACATTTCAGCCTCTTCCTATCAGCAAATCAGATCTTATTTTAGTGCACAATCTCCCATATATTATCCAAATGTCCCAGACAATCAATAAATGGCAAGACCAACATGGGATGATGGGCTTCGGCTCACTTAATACATACATGATCTTTAATCTTCTGCACACACTCATTCCTGCACTGGACTCGAGGTTCTTCCAAACTATGAGAAACTTTTCCATTGCGACTGGAGACACGCAGAGGGAGATGCCACGCTGGCTGCGATGCATTCAGCAGACAGAGCGAGGGTTTGACATTCTGCTCAGTCATGCGCTTAGAGAAAGACATACACAGAATGAGGCTGAAGAATTGATTCATGATGTTTATTCGTCCCTCAAGAAAAAACTAACAGATTTGATCTGGAGGGACGACAGGtcttcagcatttattttgcGTAAGataaaatCTCTTAATCCAAGACTCTCCACTAAAACAAACAACCTCAGTCACGCGGAACTCAACCGTCTCTACGCAGagGTGGTTTTGAGTGAGGAGGATTTTTTCTCCAACTATCTGCAGATGCTGGTGCTGGAGCAGAGGAGCAGGATCAGACTGCTCTCACACGGCACACAGACTGATGGTTTGTCTATCACTCCATTCGTCTCTGGAAATGACATCATCATCCCTGTTGGAATGTTTGTGTCACCCTTCTTCCATTCCTCATATCCCAGGGCGCTAAATTACGCCACACTGGGATCTCTGATGGCTAAAGATCTTCTTCACCTTCTGCTCCCTGATATCCACACACGAGCCAACAATCCAGAGTCAGTGAGCATGTGCATATGGTCTCATTATGTGAGCGTGACCAAGGATCCAGGACGGGTCGGCAcgttctctctttccctctttgAACAGCAGGAGGTTTGGGTGCAGTATTCTGCTCTACAAGTGGCACTGGATGCTTATAAGATGAGTTTAGCAAGGCATCCAGAAGACTCTTCTCTATCAGGCCTTTCTTACATTCATCTGTTCCTTTCCTCCTTTACTAAGGTAACATGTGACGCTGACCCCTACCGTGAGTTCATGCCCTTTGAACCTTCCTTCCTGGTGACAGTCCTGTGCTCAAACTCACGCTTCTGCCCCACACCACTGACCTGTGTGAATAAATCTCAGCGTTATCCTCCAGAGATGTGTCAGAGTCGAACGCTGCACTGAACCTGAGAGGAACTCTTTTCCGCTGAGAACTGTTGGAGCTAGTTTGGGACTTTCGTACCATTGGAGCTGCTCactgtttaacaaaaaaaggagAAGGTCATTCCAGAGAtcataaaactttttatattcatttgttaagTAACGGGTTTAGATATGTCACATATAGGCTACGTACTTTTAAGCAATATTATCACATTTGGTAACTCACGTACACTATGGTTAACAGTTAAAACCTGCTTGGTAGATATGATCTCTCACAGCACTTTGAAAATTGACCATGTTTTTACTATAATATTGATTTTTGGAGGAAATGTAGATTCAATGTAGAAACAACATTTTAGGAAAAGGAGGAaatcacatgcatttttttttactacaattaGCCTAGTTTGTTAACAATGTTGCTGGTTTACAAGTGGTTACTCTGAATACCGCAGTTAAACTGGTTACTAAACAAGATTTGTGGTCAATTCTACCCAGGAAGGAGAGCATTTCACAGTATAAAAGTTATTCctgttgtaattaattaatgtaatggATATTTGTGAGATTTACTAAccacatatattacatacagcACTGAATTAATTAACTTCACTTAATTGTAATTGGACATTTATATGTCACATGTTTTCTAAACACCTTAATTTTAATCTAATCGTCAGTCTAATctgaaatatagaataaaatgatCATCGAGTAAAAGTGAAGGAACTTTTATACGTGACTGCAGAGAAGAAAGCAACATCTCTGAGTTGGTCCGAGAATAACAGGACATCCTGACGTAAGATAGGGTGACGTGTTCTAACTATTTTCATTGGTCAGATGGGGATTTTTGTCACCttgaaatgtatacttttgacTATAAAAATTCTGGTCAGAGGGCCCTtgtctctttgctcacagacccaaactgtgtgtaaaccagaccACTTCATCactgagaaataaaatcaaGGCAAAGACAACTTTGTTTGGCTCTTCAATCTCAGTCTTCACACTTAGTTTATTACTTTGACAAAATAAGAATTTCCACAACATTGATTATGGATAATTGTGCTTTTAGTCTCTCAATTGTAAATACAGTTTGAGCTCTAAAGCCagaatgtattataaatgtcagTCTTATATTCGAAATGTATTGTATTTGGatgaaacataaaaatttattttttgcatgtgtgcTTTTAGGTCTGTAGTCAAAGAATGTAATACATATACCATTTCATGTTTCAGTGCAGGACATGAATctgtataaaaattatttgatcaCGTAAAAGaccatttaaattcaaattaaatttcaacAACAATATATCTTAAtccaggcaaaaaaaaaagcatcccacaaaaatgctaaattcctAGATCTAGTAAATAAACCATTTGACTGGGAAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004222 metalloendopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163638 lncRNA downstream 63199 8589898 ~ 8590634 (-) True G110773
TU163610 lncRNA downstream 102281 8547782 ~ 8551552 (-) True G110753
TU163615 lncRNA downstream 102281 8547782 ~ 8551552 (-) False G110753
TU163331 lncRNA downstream 414657 8237758 ~ 8239176 (-) True G110548
TU163329 lncRNA downstream 418040 8234908 ~ 8235793 (-) True G110546
TU163682 lncRNA upstream 181351 8845525 ~ 8845993 (-) True G110807
TU163727 lncRNA upstream 336613 9000787 ~ 9001428 (-) True G110836
TU163733 lncRNA upstream 340364 9004538 ~ 9005206 (-) True G110842
TU163741 lncRNA upstream 343123 9007297 ~ 9007532 (-) True G110849
TU163744 lncRNA upstream 366961 9031135 ~ 9031449 (-) True G110852
XM_043261281.1 mRNA downstream 270 8651956 ~ 8653563 (-) True emg1
XM_043261279.1 mRNA downstream 4102 8643158 ~ 8649731 (-) True nop2
XM_043260323.1 mRNA downstream 17818 8634040 ~ 8636015 (-) False wu:fj39g12
XM_043260322.1 mRNA downstream 17821 8634040 ~ 8636012 (-) False wu:fj39g12
XM_043261749.1 mRNA downstream 23655 8625617 ~ 8630178 (-) True gapdh
XM_043261280.1 mRNA upstream 392 8664566 ~ 8680965 (-) True zyx
XM_043260964.1 mRNA upstream 67523 8731697 ~ 8758899 (-) False clcn1b
XM_043260967.1 mRNA upstream 67523 8731697 ~ 8757465 (-) False clcn1b
XM_043260962.1 mRNA upstream 67523 8731697 ~ 8757465 (-) True clcn1b
XM_043260963.1 mRNA upstream 67523 8731697 ~ 8757465 (-) False clcn1b
XR_006252934.1 other downstream 6278 8647414 ~ 8647555 (-) True LOC122361375
TU163623 other downstream 17611 8633350 ~ 8636222 (-) True wu:fj39g12
TU163343 other downstream 337148 8312265 ~ 8316685 (-) True G110556
TU163340 other downstream 351588 8298789 ~ 8302245 (-) True G110554
TU163327 other downstream 437238 8216029 ~ 8216595 (-) True G110544
TU163829 other upstream 481756 9145930 ~ 9152183 (-) True G110911
TU163906 other upstream 606797 9270971 ~ 9272605 (-) True G110974
TU164366 other upstream 2082619 10746793 ~ 10748300 (-) False LOC122361037
TU164396 other upstream 2197777 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other upstream 2197777 10861951 ~ 10866428 (-) False LOC122360812

Expression Profile