RNA id: XM_043261281.1


Basic Information

Item Value
RNA id XM_043261281.1
length 1014
RNA type mRNA
GC content 0.46
exon number 5
gene id emg1
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 8651956 ~ 8653563 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGACGTACATTTGACGCGTCGTAGTTCTGTGTCAACATGGCTGCACGCGCTGGAGATAAGCGTGGTCTGGAGCATTTAGATGAATATGACCCCAAACCggcaaaacagaacaaaagttTGCACGAACAGATGACGGAAAAGCGTCTCGTCGTTGTTTTAGAAGGAGCGACGCTTGAAACCGTGAAGGTTGGAAAGACATTTGAGTTGCTGAACTGTGATCAACATAAGAGCATGATCATAAAAAGCGGAAGAGACCCTGGAAAGATTCGCCCTGATATCACACACCAGTGCCTGTTGATGTTACTGGACAGTCCTTTAAACAGAGCTGGACTGCTGCAAGTGTACATTCACACAGAGAAGAATGTTTTGATCGAGATCAACCCGCAGACAAGAATTCCTCGCACTTTTGCGCGATTTTGCGGACTAATGGTCCAGCTGCTGCACAAGCTGAGTGTGAGAGCGGCAGATGGTCCTCAGCGTTTGTTGAGGCTGATTAAAAACCCGGTGTCGGACCACCTTCCGCCTGGATGCCCCCGATATTCAACATCCTTCAAAGCAGGAGACGCTGTTTGTCCCAGAACGGTTGTCCCTAAAGACGGCCCTGCCGCTGTCGTCGTTGGAGCATTCGCACACGGAGCAGTGAACGTGGACTACACAGAAAAGACGGTGTCCGTCAGTAACTATCCTCTGTCTGCAGCTCTGACCTGTGCCAAGATGTGTTCAGCTTTTGAAGAGGTTTGGGGAGTGTTATGACAGAACCAAACTGGTATGAACTGTCAGGAACAGACCTTTTGGActgtattgtgtttgtgtgtacagtCCATtccttggagaaaaaaaatagtgtaataTGGCGGCACAGCAGCGGACAATATTTCATGTATTGTAACACAATTTAACTCGCATTGACGCAAACCATTATACCCTTAAAGTGTGGGGTATTAGACTTCGCTTTCATTTTGTataagtatatacatttattaataaacgcAGAGATCTGCATTTCTGAAAGAA

Function

GO:

id name namespace
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K14568 EMG1, NEP1; rRNA small subunit pseudouridine methyltransferase Nep1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163638 lncRNA downstream 61322 8589898 ~ 8590634 (-) True G110773
TU163610 lncRNA downstream 100404 8547782 ~ 8551552 (-) True G110753
TU163615 lncRNA downstream 100404 8547782 ~ 8551552 (-) False G110753
TU163331 lncRNA downstream 412780 8237758 ~ 8239176 (-) True G110548
TU163329 lncRNA downstream 416163 8234908 ~ 8235793 (-) True G110546
TU163682 lncRNA upstream 191962 8845525 ~ 8845993 (-) True G110807
TU163727 lncRNA upstream 347224 9000787 ~ 9001428 (-) True G110836
TU163733 lncRNA upstream 350975 9004538 ~ 9005206 (-) True G110842
TU163741 lncRNA upstream 353734 9007297 ~ 9007532 (-) True G110849
TU163744 lncRNA upstream 377572 9031135 ~ 9031449 (-) True G110852
XM_043261279.1 mRNA downstream 2225 8643158 ~ 8649731 (-) True nop2
XM_043260323.1 mRNA downstream 15941 8634040 ~ 8636015 (-) False wu:fj39g12
XM_043260322.1 mRNA downstream 15944 8634040 ~ 8636012 (-) False wu:fj39g12
XM_043261749.1 mRNA downstream 21778 8625617 ~ 8630178 (-) True gapdh
XM_043261743.1 mRNA downstream 26437 8617631 ~ 8625519 (-) False opn9
XM_043261277.1 mRNA upstream 270 8653833 ~ 8664175 (-) False kel
XM_043261276.1 mRNA upstream 270 8653833 ~ 8664174 (-) True kel
XM_043261280.1 mRNA upstream 11003 8664566 ~ 8680965 (-) True zyx
XM_043260964.1 mRNA upstream 78134 8731697 ~ 8758899 (-) False clcn1b
XM_043260967.1 mRNA upstream 78134 8731697 ~ 8757465 (-) False clcn1b
XR_006252934.1 other downstream 4401 8647414 ~ 8647555 (-) True LOC122361375
TU163623 other downstream 15734 8633350 ~ 8636222 (-) True wu:fj39g12
TU163343 other downstream 335271 8312265 ~ 8316685 (-) True G110556
TU163340 other downstream 349711 8298789 ~ 8302245 (-) True G110554
TU163327 other downstream 435361 8216029 ~ 8216595 (-) True G110544
TU163829 other upstream 492367 9145930 ~ 9152183 (-) True G110911
TU163906 other upstream 617408 9270971 ~ 9272605 (-) True G110974
TU164366 other upstream 2093230 10746793 ~ 10748300 (-) False LOC122361037
TU164396 other upstream 2208388 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other upstream 2208388 10861951 ~ 10866428 (-) False LOC122360812

Expression Profile