RNA id: XM_043261296.1


Basic Information

Item Value
RNA id XM_043261296.1
length 1821
RNA type mRNA
GC content 0.50
exon number 8
gene id smpdl3b
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 4889483 ~ 4894107 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCATTAAAACAGGGGGCTGGCTGTTTATTTGCTCCAGCTGACTTATCTTATCTCTCAGTTTATTGGCGGCTGTGAAATTAGCGTCTTATGAAGGATTACAGCAGTCAGATCAGAGTCTCTGGATCTCTCACGCGCATTACATGAAGCTGACAATGGCATGCGTTTGGAAAATGATTCTTCTCAACATTTTCGCCTTCGCCGGCGGAAGCAGCGCGATGAAAGGTTATTTCTGGCACATCTCAGACCTCCACTGGGATCCTTCTTACGACGCAGGGAGCAGCTCTGCATCGAAATGTGCTTCTAGTGGAGGCCGTCCGACCCCAAACGCAGGCAGATTTGGAGATTATTCCTGTGATTCCCCGTGGACTCTGATAAACTCGACATTGAGTGCCATGAGAGAGATCCTGCCTGACCCGGACTTCATCATCTGGACCGGAGACGATACGCCTCATGTCCCCGACGAGCAGCTGGGAGTCGAACCTGTCCTGCGTATAATCGGCAATCTCACGCGCAtcataaaaaacacttttcccAATACCAAGGTGTACTCTGCGATGGGAAATCATGACTACCATCCAAAGAACCAAATGCCCCCGGGAAAAAACGTCATTTATGAGCAAACCGCAAACCTGTGGCACGACTGGCTACACGCTGCATCAAAAGAAACCTTTAAAACGGGCGGATATTACACAGAGAAGCTGCTGAATCAAACCGGCTTCAGAGTCGTGGTCCTAAATACAAACCTCTATTACGATCAGAACAAAGTGACGGAAAACATCAAAGACCCCGCGGATCAGTTCAGCTGGGCCGATAGAGTGCTTCAGGACGCAGCTAAGAACAACGAGAAGGTTTACATCATCGGCCACGTCCCTCCAGGGTTTTTCGAGAAGAAGAGAGATAAAGCCTGGTTCAGAAAGGAGTTTAATAAGCGTTATATAGATCTCATCCAGAAGCACAGCGCTGTCATACAGGGCCAGTTCTTTGGGCATCATCACACCGACAGCTTCCGCGTCTTCTACAGCTCGAAAGGATCTCCCGCAAGTGCAATGTTCCTGACTCCAGGAGTGACACCCTGGATAACAACATTACCTGGTGTCAGAGATGGAGGAAACAACCCTGGAATACGAGTCTTCGAGTATGACACCAAAACACTTTTGATCAAGgATATCTTGACCTACTACATGAACCTGACGTACTCGAACGTGGCGCGCGAGCGCTGGGAGAAGGAGTACCGGATGACGGAGGCGTTTCGTGTCCCCGACGCTTCTCCCGCCTCCATGCACCGCGCCATGGAGCGGATATCCAGCGACGGCCGTTATCTGCAGAAGTACTACGAGTTCAACTCCGTGAACTACGACCTGACGGAGTGCGGCGCCGACTGCCGCGTCGATCACGTGTGCGCCATCAGGGAGGTGGACTTCGACGCGTACGAGCGGTGCGTGCTGAAGGagggagctccgcccactgccccgctgctgctgcttcctctgctgctgtcaCTCACCCTCAGCCTGCTAGGCCTTCCGACCGGTGCATGAGTGTGAACGACACCATTAAGTACtttaactgaaatgtatttatttaccgAACTGTTTGATTTGCGTGTGAAGTGtggaaacaaaattaaaacatctgcaaatgAATGCTCATCTCGTGCCTTTGAGAGAACCCAAAGAATCAATAAACTGGGGAAGGctgtgactttttttccccatgcatGATCAATTATGTGCCACACATCAGTTGAGGCATCCAGGACTTTAATGTGTTTCCACGTGCATGTGCTCTTACACAATAAAAACGTTGTCCACCTCGAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162295 lncRNA downstream 24804 4864417 ~ 4864679 (-) True G109836
TU162271 lncRNA downstream 28452 4860248 ~ 4861031 (-) True G109825
TU162262 lncRNA downstream 31085 4855654 ~ 4858398 (-) True G109824
TU162254 lncRNA downstream 66797 4821555 ~ 4822686 (-) True G109820
TU162253 lncRNA downstream 69747 4818807 ~ 4819736 (-) True G109819
TU162380 lncRNA upstream 194794 5088901 ~ 5089304 (-) True G109887
TU162384 lncRNA upstream 283224 5177331 ~ 5177535 (-) True G109891
TU162405 lncRNA upstream 296243 5190350 ~ 5190705 (-) True G109906
TU162406 lncRNA upstream 296674 5190781 ~ 5191350 (-) True G109907
XR_006252732.1 lncRNA upstream 304684 5198791 ~ 5207419 (-) True LOC122359853
XM_043261763.1 mRNA downstream 89658 4795810 ~ 4799825 (-) True LOC122360926
XM_043261771.1 mRNA downstream 275466 4511974 ~ 4614017 (-) True LOC122360932
XM_043260882.1 mRNA downstream 646141 4203681 ~ 4243342 (-) True LOC122360353
XM_043260881.1 mRNA downstream 728962 4159487 ~ 4160521 (-) True LOC122360352
XM_043260702.1 mRNA downstream 1145871 3729142 ~ 3743612 (-) False csf3r
XM_043261292.1 mRNA upstream 11750 4905857 ~ 4929011 (-) True limd1a
XM_043261293.1 mRNA upstream 11750 4905857 ~ 4924418 (-) False limd1a
XM_043261291.1 mRNA upstream 35051 4929158 ~ 4972573 (-) True lars2
XM_043260936.1 mRNA upstream 96871 4990978 ~ 4995038 (-) False clec3ba
XM_043260935.1 mRNA upstream 96871 4990978 ~ 4995038 (-) True clec3ba
TU162095 other downstream 793979 4094757 ~ 4095504 (-) True G109724
TU161934 other downstream 1759504 3128061 ~ 3129979 (-) True G109600
TU161510 other downstream 4006731 882459 ~ 882752 (-) True G109287
TU161498 other downstream 4256586 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 4594498 294867 ~ 294985 (-) True LOC122361256
XR_006252797.1 other upstream 338104 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 341539 5235646 ~ 5245460 (-) False vegfaa
XR_006252935.1 other upstream 465403 5359510 ~ 5359679 (-) True LOC122361376
TU162692 other upstream 922957 5817064 ~ 5818362 (-) False ndufa3
TU162864 other upstream 1050114 5944221 ~ 5948789 (-) False LOC122359839

Expression Profile