RNA id: XM_043261301.1


Basic Information

Item Value
RNA id XM_043261301.1
length 1458
RNA type mRNA
GC content 0.46
exon number 11
gene id emc2
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 22179651 ~ 22208604 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGGAAAACATGTCGTCTATATCGGAGCTCTACGATGTTAGTTGGGAAGGTAAATGGCTTGTTTTCGTTAACAGCAGTTATTAAGATATTCGAAATGCGTGACAAACTGCGTAAGTGGAGAGAAGAGAATTACAGGAACAGTGAGCAGATTGTGGATGTCGGTGAAGAGCTGATTAATGAGCATGCATCTAAACTGGGAGATGACATTTGGATAATTTACGAGCAGGTGATGATTGCAGCGCTGGACTGCAGTCGTGACGATCTGGCCTGGAGTTGCCTGCAGGAGCTGAAGAGGCAGTTTCCAGACAGTCACAGAGTGAAGCGATTAGCAGGGATGCGGCTGGAGGCTCTGGAGAGGTATGAGGATGCCAATAAGCTGTATGACTCAATACTACAAGATGACCCTACTAATACGGCAGCAAGGAAGCGCAAGATCTCCATCCTGCGAGCACAGGGCAAAAGCAGTGAGGCCATCCGTGAGCTCAACGAATATCTGGAGCAGTTTGTGGGAGATCAGGAAGCATGGCATGAGCTGTCAGAACTCTACATCAATGAGCATGATTATGCAAAAGCAGCTTTTTGTCTTGAAGAGCTGATGATGACGAATCCACATAATCACCTGTACTGCGAACAGTATGCTGAGGTAAAGTACACCCAGGGAGGTCTGGAAAACCTCGAACTGGCCAGGAAGTATTTTGCGCAGGCACTGAAGCTTAACAACAGAAACATGAGGGCCTTGTTCGGCCTTTACATGTCGGCCAGTCACATCGCTGCCAGCCCAAAAGTGAGCGCAAAGGTGAAAAAGGACAACATGAAGTACGCAGCGTGGGCCACTTCTCAGATTAGCAGAGCCTATCAGATGGCGGGCCGTGGGAAGAAGGAGAACAAATGCTCGGTGAAGGCGGTGGAGGAAATGTTGGAGTCCATGCAGATCACCATGTCTTAAACCTCAGCTCTGCCCCCCCTCCTTCCCACAACCTCTGTCACCACAACACCATGGCAGCTCTCCCTGCTCACTATAgtacaccaccaccaccaccctcAGACCAGACCACCCAACCCAACCTCCTCTATATCAGTTCCTCCATCTTTGTATTGTTTTGAGGTCTCCGGGTAGGCTTCAGAAACCCTGAACCATTCCACAAGTTTCTTGATTCAACCTTCAGCActcctttatttattattaagagCTTATCGTTGGGTCAATTGGTGGAATCAAATGCGTCTGCGATGGAAGTGAGCGTGAAAAGGAAAATCTACTAATGTTTTTAGTTTGGTCAGTTCTTATAGTTTATAAGGGTTCGATTAGAGAGAAAACTGAGAAGATGGAAATGTACTTAGTGTATGTGCAAGAAACTGATGTCATGACTGATCTGTTTCttagcaaaataaatgaaccaGCTGGAAGATCAGTTTCTTTCTTAGCAAAATAAAGGACTGCATTTTTGACTAACCATA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0072546 endoplasmic reticulum membrane protein complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170039 lncRNA downstream 305600 21873826 ~ 21874051 (-) True G115170
TU170024 lncRNA downstream 354214 21825198 ~ 21825437 (-) True G115155
TU169974 lncRNA downstream 565472 21605980 ~ 21614179 (-) False cenpw
TU169954 lncRNA downstream 790504 21388815 ~ 21389147 (-) True G115098
TU169865 lncRNA downstream 848293 21331012 ~ 21331358 (-) True G115051
TU170171 lncRNA upstream 21689 22230240 ~ 22237066 (-) True G115262
TU170280 lncRNA upstream 474876 22683427 ~ 22683638 (-) True G115335
TU170525 lncRNA upstream 565215 22773766 ~ 22774032 (-) True G115496
TU170565 lncRNA upstream 677164 22885715 ~ 22888001 (-) True G115536
TU170567 lncRNA upstream 683555 22892106 ~ 22901138 (-) False cdc42se1
XM_043260245.1 mRNA downstream 50142 22124696 ~ 22129509 (-) True trhra
XM_043261389.1 mRNA downstream 90559 22087641 ~ 22089092 (-) True eny2
XM_043261869.1 mRNA downstream 178596 21991274 ~ 22001055 (-) True sybu
XM_043261610.1 mRNA upstream 121628 22330179 ~ 22332034 (-) True cd83
XM_043261611.1 mRNA upstream 126612 22335163 ~ 22344100 (-) True zgc:113232
XM_043261609.1 mRNA upstream 139099 22347650 ~ 22351043 (-) True snrnp48
XM_043262106.1 mRNA upstream 211319 22419870 ~ 22523750 (-) True tsnare1
XM_043262107.1 mRNA upstream 212248 22420799 ~ 22523750 (-) False tsnare1
TU170138 other downstream 90597 22087649 ~ 22089054 (-) False eny2
TU170105 other downstream 211116 21964855 ~ 21968535 (-) True G115207
TU170018 other downstream 375847 21801475 ~ 21803804 (-) True G115149
TU170010 other downstream 474692 21704018 ~ 21704959 (-) True G115141
TU169980 other downstream 618435 21560221 ~ 21561216 (-) False G115116
TU170599 other upstream 724076 22932627 ~ 22933967 (-) True G115554
TU171080 other upstream 1311257 23519808 ~ 23524382 (-) True G115882
XR_006252802.1 other upstream 1379634 23588185 ~ 23609841 (-) False usp45
TU171098 other upstream 1461347 23669898 ~ 23675298 (-) False mchr2a
TU171232 other upstream 2118156 24326707 ~ 24327973 (-) False phactr4b

Expression Profile