Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_043261313.1 |
| length | 1563 |
| RNA type | mRNA |
| GC content | 0.41 |
| exon number | 8 |
| gene id | cd22 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_056714.1 |
| NCBI id | CM032083.1 |
| chromosome length | 28146790 |
| location | 19416962 ~ 19421094 (-) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0042440 | pigment metabolic process | biological_process |
| GO:0051186 | obsolete cofactor metabolic process | biological_process |
| GO:0042168 | heme metabolic process | biological_process |
| GO:0046148 | pigment biosynthetic process | biological_process |
| GO:0033013 | tetrapyrrole metabolic process | biological_process |
| GO:0033014 | tetrapyrrole biosynthetic process | biological_process |
| GO:0006778 | porphyrin-containing compound metabolic process | biological_process |
| GO:0006779 | porphyrin-containing compound biosynthetic process | biological_process |
| GO:0006783 | heme biosynthetic process | biological_process |
| GO:0004418 | hydroxymethylbilane synthase activity | molecular_function |
| id | description |
|---|---|
| ko00860 | Porphyrin and chlorophyll metabolism |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU168980 | lncRNA | downstream | 34599 | 19379415 ~ 19382363 (-) | False | G114479 |
| TU168963 | lncRNA | downstream | 50667 | 19360728 ~ 19366295 (-) | True | G114464 |
| TU168961 | lncRNA | downstream | 62340 | 19352120 ~ 19354622 (-) | False | G114463 |
| TU168962 | lncRNA | downstream | 62340 | 19352120 ~ 19354622 (-) | True | G114463 |
| TU168972 | lncRNA | downstream | 67857 | 19348813 ~ 19349105 (-) | True | G114472 |
| TU169080 | lncRNA | upstream | 175338 | 19596432 ~ 19647799 (-) | False | dpys |
| TU169068 | lncRNA | upstream | 181344 | 19602438 ~ 19643490 (-) | False | G114539 |
| TU169087 | lncRNA | upstream | 188011 | 19609105 ~ 19619077 (-) | True | G114550 |
| TU169067 | lncRNA | upstream | 219820 | 19640914 ~ 19643490 (-) | True | G114539 |
| TU169193 | lncRNA | upstream | 262528 | 19683622 ~ 19683930 (-) | True | G114607 |
| XM_043260230.1 | mRNA | downstream | 155168 | 19259324 ~ 19261794 (-) | True | LOC122359968 |
| XM_043261885.1 | mRNA | downstream | 167313 | 19243942 ~ 19249649 (-) | True | dnase2 |
| XM_043260179.1 | mRNA | downstream | 205776 | 19199873 ~ 19211186 (-) | False | phf1 |
| XM_043260178.1 | mRNA | downstream | 205779 | 19197851 ~ 19211183 (-) | True | phf1 |
| XM_043260780.1 | mRNA | downstream | 221538 | 19095755 ~ 19195424 (-) | True | syngap1b |
| XM_043260250.1 | mRNA | upstream | 54724 | 19475818 ~ 19479474 (-) | True | upk1a |
| XM_043261248.1 | mRNA | upstream | 66663 | 19487757 ~ 19490733 (-) | False | zgc:101716 |
| XM_043261247.1 | mRNA | upstream | 66663 | 19487757 ~ 19490728 (-) | True | zgc:101716 |
| XM_043261243.1 | mRNA | upstream | 226478 | 19647572 ~ 19657724 (-) | False | dpys |
| XM_043261242.1 | mRNA | upstream | 226478 | 19647572 ~ 19657723 (-) | True | dpys |
| TU168710 | other | downstream | 595874 | 18815216 ~ 18821088 (-) | True | rpz |
| TU168714 | other | downstream | 595874 | 18815216 ~ 18821088 (-) | False | rpz |
| TU168715 | other | downstream | 595874 | 18815216 ~ 18821088 (-) | False | rpz |
| TU168665 | other | downstream | 718646 | 18693912 ~ 18698316 (-) | False | LOC122360940 |
| TU169372 | other | upstream | 745701 | 20166795 ~ 20167614 (-) | False | G114715 |
| TU169487 | other | upstream | 1020871 | 20441965 ~ 20452450 (-) | False | G114793 |
| TU169489 | other | upstream | 1020871 | 20441965 ~ 20452450 (-) | True | G114793 |
| TU169673 | other | upstream | 1230883 | 20651977 ~ 20653574 (-) | True | G114901 |
| TU169801 | other | upstream | 1591513 | 21012607 ~ 21017105 (-) | True | G115003 |
