RNA id: XM_043261375.1


Basic Information

Item Value
RNA id XM_043261375.1
length 4602
RNA type mRNA
GC content 0.43
exon number 24
gene id hace1
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 3684118 ~ 3699070 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCTAAGACCCTAATCTCTTTTAACTAAGCAACTAATTTTACTTTCGCTCATTATCCTATGTAATCATTTACTAAAACAAGCTAATATTGCTAAGCAATTTAGTTTGAGATAATCTTAAATCATAATCTCAGAACATTGGAAGTGTAGGCTACATGTGTATAATTATTctcaattattcatatttattctttttgtaataaatatgctAATTCAAACATTTCCTAATTAGTATTTGAATCTTAGTTGTGATCATTGAAtaatgtataacatttaaataaatacgaTTTGAATAGTTTAAAGGCCCACGGCCAATTTATTGAATGGAGCCACGTCATGTGcagactacatttcccataatgcaatgcaatgaaaaCAGGAAGAAAGACACCATGAGgaaatatttttccaaaatgaATCAGAAAGCGATGGAGGGATATTGTGCTGGGGAATGAGTCGTGAACGCAGCGCATCATCCGACAGCAGATGGAAGAGATCGAGGCTTTGGCTTTtccgagagagagacagaggtaATACGTGTTCCATGAGCTGAATTCCGTGTTGGACATCTCGTATGATGGAACGGGCGATGGAGCATTTGAATGTACAGCTGAATCGACTGACGCGCTCCCTGCGCCGCGCGAGGACCGTGGAACTCCCAGAAGACAGTGAAACGGCTGTGTACACCCTCATGCCCATGGTCATGGCTGACCAGCACAGGTCAGTTTCTGAATTGCTTTTAAACTCAAAGTTCGACGTCAACTACGCCTTTGGACGCGTTAAAAGAAGCCTTCTGCACATTGCTGCCAACTGTGGATCAGTGGAGTGTCTTGTCCTTCTGTTAAAGCGTGGAGCGAATCCCAACTATCAGGACATCTCCGGCTGCACACCTCTGCATCTGGCCGCGAGAAACGGACAGAAGAAGTGTATGGGCAGGCTGTTAGAGTACAATGCTGATGTTAATATCTGCAATAACGAAGGTCTCACTGCTATTCATTGGCTGGCGGTGAATGGAAGGACAGAGCTACTTCATGACCTGGTTCAGCACGTCTCTAATGTGGACGTGGAGGACGCCATGGGCCAGACAGCCTTACACGTGGCCTGTCAGAATGGACACAAGACTACAGTGCAGTGCCTCTTAGACAGCGGAGCGGACATCAACAGGCCCAATGTCTCTGGAGCCACCCCGCTCTATTTTGCCTGCAGTCATGGTCAGAGGGACACCGCACAGATACTGCTCCTCAGGGGAGCTAAATATTTGGCTGACAAGAATGGGGTTACACCGCTTGACCTGTGTGTGCAGGGTGGTTATGGTGAAACATGTGAAATTCTCATCCAGCACCATAGCAGACTGTTTCAGACCCTGATACAGATGACTCCGAATGATGACATTAAAGAGAACATGctgagGCAGGTTCTAGAATATGTTTCACAGCAGACCGACACCAGCTACCAAAGGATCTTGACCAGTTTGGCTGAGGTGGCCACCACTAACGGACATAAACTGCTGAGTCTGTCCAGCAACTTCGAGGTCCAAACAAAGAGTTTGCTCAGAATTATCAGGATCTTCTGTCATGTGTTCTGTCTTGGACCATCCTCCCCAAACAACGGGAATGACATGGGTTATAACGGAAACAAGACGCCACGCAACCAGGTGTTTAAGCCTCTGGAGCTGTTGTGGCACTCTCTTGATGAATGGCTGGTCCTCATCTCCACCGAGCTCGATAAGGAGAGCACAGACGCAACAACCTCGTCCTCAGGAAATGATATCGCATCACTCTTCCTGAAAAAGCAAGAGGTGGACCCTTCTGTTCCCAGTGAGAATCCCCCTCTGTTGCTGGACGCCAAGTCAGTGATGAAGACGCCGGAGGGCTACGCAGACGGTCAGGATGTCATCTCCATGATAGCCAATCGCCTGAGCGCTGTCATCCAGGCTTTCTACATGTGCTGTTCCTGTCAGATGCCACAGGGcATGACCTCCCCTCGATTCATCGAGTTTGTCTGTAAACACGATGAAGTGCTCAAGTGTTTCGTGACGAGGAATCCCAAAATCATCTTCAACCACTTCCACTTCCTGCTGGAATGTCCCGAGCTCATGTCTCGCttcatgcatattattaaaggACAGCCATTTAAGGACAGGTGCGAGTGGTTTTATGAACATCTTCTGGCCGGACAGCCAGACTCGGATATGGTGCACCGGCCAGTTAATGAAAACGATATCCTACTCGTTCATAGAGACTCAATATTCCGAAGCAGCTGCGAGGTTGTGTCCAAGTCATCGAATGAAAAACTCAAACAAGGCATTGCAGTGCGTTTTCACGGCGAAGAAGGAATGGGTCAGGGGGTGGTCAGAGAGTGGTTTGACATTCTGTCCAATGAGATCATCAACCCGGACTATGCACTGTTTACACAATCAGCCGATGGTACCACGTTTCAACCCAACAGCAACTCCTCTGTAAACCCAGATCATCTAAACTACTTCCGATTTGCTGGTCAAATCCTGGGTCTGGCTCTCTATCATCGACAGCTGGTGAACATCTACTTCACACGCTCCTTTTACAAGCACATACTGGGTATCCCAGTGAGCTATCAGGATGTGTCATCCATTGACCCAGAGTATGCTAAAAATCTTCAGTGGATTCTGGACAATGACATCAGTGACCTTGGCCTTGAGCTCACCTTCTCTGTAGAGACAGATGTGTTTGGAACTATGGAAGAGGTCCCTCTCAAACCAGGAGGAACTACTATTCAGGTCACCCAAGACAACAAGgcGGAGTATGTGCAGCTGGTGACGGAGCTCAGGATGACCCGAGCGATCCAGCCGCAGATCAATGCCTTCCTGCAGGGCTTTCACACTTTCATCCCCCCCTCGCTCATCCAGCTCTTTGATGAATATGAGCTGGAACTGCTGTTGTCAGGCATGCCTGAAATCGATGTGATGGACTGGAAGAAGAACACGGAGTACACAAGTGGCTATGACCTGCAGGAGCCTGTTATACAGTGGTTTTGGGAAGTGGTTGAAAATCTCACTCAAGAAGAAAGAGTCCTTCTCTTACAGTTTGTTACAGGAAGTTCTAGAGTACCTCACGGAGGATTCGCTTTTCTGATGGGCGGCAGCGGTCTGCAGAAGTTTACTATCGCCGCCGTGCCCTACACATCGAACCTACTGCCTACCTCTAGTACATGCATCAACATGCTGAAACTCCCAGAATACCCCAGCAAGGACATCCTGCGCGATCGTTTGCTGGttgcactgcattgtgggagTTACGGATACACCATGGCGTGATGTCGGCTTCTGCGTTTGCTGAGAATTCTGCTCTGTGGACACACAACGCGCACATGGCTCAGTTCAGGGATTCTTCAACACTTCGATTCAAAagcctttatattttatttatttttttcggCGCGAggaaatttatgaaaaaagcATCAGCGGATAATGACATGAATTAATGATGCTTTAGACACCGAGGCTGTTTTGTATGTATGATAAGGATGTCCAGGTCATGTTTCaccatatgcatttttttttccattcattttttattacttgtttttcTGGTATACCAAATGCAATACTATCATACTTTGCTTTTGAATTAATACTCCTTTTTTCTGCATACCACCGAATGCAATACTATTACACcggttttgattattttatcacACGGGTTTTGTATCATGCTTATTAAAATTCTTTCAAATATTGCATGTATAATgtttacacatttttcttttttcagcacAAAATCGAATTCACGAATAGGTTATGCGtttaaaatgtacttgtttttttggtgaaatatgaCCTAGATATGCTCTTAACAGGATTCTCGAGGTTCACTCCAAATGACCTGTTAAATGCAAAAGTCGGATttcttttacattaataaacatactCCAGGCTGTATTATTTCAGTTATCTGATGCTGTTCAGCTCACGCCATGCTTAAATTGCATGTGTGTGCAGATGCATGTGAGAAAGTGAAATATCTATAGCTTTTATCACAACTGACAACTGTCAACACATGATTGATAATTGTAATTTTGAGCGGTtgcaattttttgttgttgttgtatttggTCTCGTGCGGCACACTTTCAGTTAGTGGTCTATACAGTTCTTTACTTCCGTCATGATTACTGtgccatatatatttttatgtactcAAACATATTTAGTTATAAATGGGGTTGTCAGCATAGTCCACGAATTCTTCATTTTGTATTCAGTGTCTAAATTGTTTATGTGCAGTTACGTTTAGTATAAATTATCAAATGATGTTATAGGTGTGCCAAATATTCTCATACAAAACGAATTATAATTTCCTTTTGTAAAACAAGGACATGCCATGAAATGATTTTGGAAAGGGAAGTCGTATCATTCTAGCAATGTATCATATCTATCGGTTGTggtcaaagtgaaaatgtagagatatataaatttatttattctaatttgTGATTATGATTTTGgattcagatttgttttttatactTGTAAGAACAGAGTATGCTGTACAATCTTTTGAATATTACAGGTGGGCGTCAGGAAATATCAAAgtatgctttttattaaaaatgatgctAACGGA

Function

GO: NA

KEGG:

id description
K12166 HACE1; E3 ubiquitin-protein ligase HACE1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161958 lncRNA downstream 54701 3628808 ~ 3629417 (-) True G109615
TU161957 lncRNA downstream 59106 3624642 ~ 3625012 (-) True G109614
TU161947 lncRNA downstream 265513 3343930 ~ 3418605 (-) True G109607
TU161940 lncRNA downstream 555202 3113842 ~ 3128916 (-) False G109600
TU161849 lncRNA downstream 841837 2842052 ~ 2842281 (-) True G109544
TU161994 lncRNA upstream 10197 3709267 ~ 3717083 (-) True G109638
TU162009 lncRNA upstream 192068 3891138 ~ 3891823 (-) True G109650
TU162087 lncRNA upstream 241887 3940957 ~ 3941639 (-) True G109716
TU162114 lncRNA upstream 454647 4153717 ~ 4155712 (-) True G109729
XR_006252809.1 lncRNA upstream 481337 4180407 ~ 4181293 (-) True LOC122360497
XM_043260891.1 mRNA downstream 619540 2915655 ~ 3064578 (-) True ascc3
XM_043260892.1 mRNA downstream 619540 2938991 ~ 3064578 (-) False ascc3
XM_043260895.1 mRNA downstream 768687 2899313 ~ 2915431 (-) False sim1a
XM_043260701.1 mRNA upstream 30072 3729142 ~ 3743612 (-) False csf3r
XM_043260703.1 mRNA upstream 30072 3729142 ~ 3743612 (-) False csf3r
XM_043260702.1 mRNA upstream 30072 3729142 ~ 3743612 (-) False csf3r
XM_043260700.1 mRNA upstream 30072 3729142 ~ 3743612 (-) True csf3r
XM_043260881.1 mRNA upstream 460417 4159487 ~ 4160521 (-) True LOC122360352
TU161934 other downstream 554139 3128061 ~ 3129979 (-) True G109600
TU161510 other downstream 2801366 882459 ~ 882752 (-) True G109287
TU161498 other downstream 3051221 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 3389133 294867 ~ 294985 (-) True LOC122361256
XR_006252883.1 other downstream 3405644 278356 ~ 278474 (-) True LOC122361163
TU162095 other upstream 395687 4094757 ~ 4095504 (-) True G109724
XR_006252797.1 other upstream 1533141 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 1536576 5235646 ~ 5245460 (-) False vegfaa
XR_006252935.1 other upstream 1660440 5359510 ~ 5359679 (-) True LOC122361376
TU162692 other upstream 2117994 5817064 ~ 5818362 (-) False ndufa3

Expression Profile