RNA id: XM_043261382.1


Basic Information

Item Value
RNA id XM_043261382.1
length 2497
RNA type mRNA
GC content 0.50
exon number 7
gene id plekho1b
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 22779235 ~ 22797020 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACAAAGAGAGAGGGACCACACATAACAGCCATAAGTTCTCCAGCTCACAGAACTCCacaagagacacacacatgaCGGCAGGAGATCGACCCACACGACACGACGGTGAGGATGATGGCACCAGCACAGACTCGTCTGCTGCTCTAGAAAGTGCGTTTCTCACAGCCTTCCGCGCGACCGCAAAGAAAAAGCCACTGGATGAGAATCAGCAGGACGCTGAATGGAAGTAAATAGACAAGAGGAGGCGTAAGATACAAACGGGGAGCGACTCGATCGACACCGAGCTCTCCTTTGAGTGCAACGTTTCGAGTCCACGCCGGGATTTTGTTTCGTTGCAGACGACACACCGAGCGCGAAAGGATCTGGATATAGCGGCTGGGGAGTCGGGAAGCTCCGTTTTATTGAGCCATGAAGAAGAACAGTTCAACAAAGCGGGGCCCTCAGGACGCCAATCAACAGTCCATGCAGCCCGACAAAACTGGCTGGATTCGCAAGTTCTGTGGCAAAGGGATTTTCAGGGAAATTtggaaaaacagatttgttaTACTGAAAGGAGACCAACTCTACATTTCTGAAAAAGAGGTCAAAGATGAGAAGAAAATCCAGGAGGTGGTGGATCTAACCGACTACGAGAGGTCTGAAGAACTGCGCAAGGCCAAAAGCAGGAGCAAAAAGAATCACAGCAAGTTCACGCTTCTGCGTTCACGACAGCCAGGCAACACGGTCCCGAATCTGGTGTTTCTGGCTGTCAGTCCAGAAGAGAAGGAGTCATGGATCAATGCACTAAATGGAGCCATCACCAGGGCCAAGAATCGCATATTGGATGAGGTGACAGTGGAAGAGGACAGCTTGTTGGCCCATCCGACGCGTGACAGAGCTAAGATACCCCATACTCGCCGTCTGCCCACCCGCGGGCACATCATGGCAGTAGCTTCCACCACAAACTCTGATGGCATGCTGACTCTTGACCTGATCCAAGAAGAAGATGTCCCCTCCTCACAGGGTCAGGACCCTAACGAGGATACCCTCGATAAAGCTGCTTCTGATCGCACCCCAGATTCCTCCATCGCAGACACCTCAAAGCTCTCAACCTGTAACGAGACCCCTGGAAAGTCCCAGAGTTTGCCGCGAAAAAGCGAGAGCACCTTCGACTGGTCAGAGAACCACAGGACGCCGCAGCTCCGCAAAAAAACGTCCACAACTGACAAGAACCGCTGTGCTTCCATGGATGAGATCCTGACGCACTACGAGACGCGAGCGCTCCCTCACTGCTCCACCTCGGCGCCCGTGCAGCCCATCAGCCAGCTCCAGGATCTCATCACCCAGAAGCTAGAAAGAACTCAGGAGCTGCTGACGGAGGTACGGGTGCAAGAAGGGAAGGGTTCGCCGGCTGGGAAGAGCTCCAGTCCGGACGGTCAGCGCATGGAGGCGGAGAAGCTTCTGGAAGAGGCGGCGTCCACTTGGGGACAGGCTCGGGACGTGCTGGAGGAAGTGAAAGAACTCAGAGCCTTGTACAAGCAGCTTGACTCCGCCTCTTCCGTCACACACAGTCCTCCACAGAATGGCAAACTAAACAGCCCTCAACAAGCAAACCACCGGAAAAGCATGATGTGAGAACATACGAAGTCCTCCATGGCATCATTTTTCAACGGACTCTTCCTGTTGACTGCTTTAGTGTTGCTGGAAACGCGCTATAAGTGTATGTATGAATTGTTAAAGAGCAAATCTAGTTTCTTCCACTCCCTAATATCAGAAATACAAGGGCTTGGTGGTTTTACCAAACACAAGCTGTTGCGTCGTAGCCTGCGGTATCAATTTTCGAAGTGATGTCGACAGGGACAGTAAAAGCACCGAGTCATTGAGCGGCCCATCAGGGTAAGACAGGGTGGGAAACACCAGACGGTGGTGATGTTGTTATCATCATCAGCCCATCACAATGTGAATGTTTTCCTTCTGTTTCATAATACACTGGAAGAGCTTCGTTTCGAAATGGTCGCAGACCCCCGGggtcatttttgtaataataataataataagaagaataatgCCCAGCACACTTGCTCTGCTGTTAACACAAACCAAGCTCATAATAAGATGCAATCAGAGTGCAGCCAAAGGCGATTGGCGGGAACGATCACAGATAGCAGAGCGTGTTTCTTGTCCGGCGGCGCTCAATATCCCGTCAGATGGGCTCTAATTGTGAACAAAGCCATGAACATGAACACAGATGACGTCTGGTGCCAGTGTTGCTGTGGAAAGTCAGCTGCCATTAAAGACGAGACTCCATGCAGTAAAggaaactattaataataattacacatttgcaCTATGGAGAATGCTGTAAAACGAGAGTGACACTGGCAAGCTATCTTTTCAAACCTAAGAGGCAGAACAGACAATCTACTGTAGGTAGGGAAACATGGGTCGTGTAGCTCTAAGTCTTTACACCTAAGTGGTAtttccgaaaaaaaaaaaaaaaaaaaaaaatgttggtat

Function

GO: NA

KEGG:

id description
K24022 PLEKHO; pleckstrin homology domain-containing family O

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170525 lncRNA downstream 5203 22773766 ~ 22774032 (-) True G115496
TU170280 lncRNA downstream 95597 22683427 ~ 22683638 (-) True G115335
TU170171 lncRNA downstream 542169 22230240 ~ 22237066 (-) True G115262
TU170039 lncRNA downstream 905184 21873826 ~ 21874051 (-) True G115170
TU170024 lncRNA downstream 953798 21825198 ~ 21825437 (-) True G115155
TU170565 lncRNA upstream 88695 22885715 ~ 22888001 (-) True G115536
TU170567 lncRNA upstream 95086 22892106 ~ 22901138 (-) False cdc42se1
TU170586 lncRNA upstream 113859 22910879 ~ 22911323 (-) True G115548
TU170604 lncRNA upstream 161664 22958684 ~ 22960933 (-) True G115559
TU170633 lncRNA upstream 199939 22996959 ~ 22997389 (-) True G115579
XM_043261187.1 mRNA downstream 11947 22763204 ~ 22767288 (-) True mrap2a
XM_043262106.1 mRNA downstream 255485 22419870 ~ 22523750 (-) True tsnare1
XM_043262107.1 mRNA downstream 255485 22420799 ~ 22523750 (-) False tsnare1
XM_043261609.1 mRNA downstream 428192 22347650 ~ 22351043 (-) True snrnp48
XM_043261611.1 mRNA downstream 435135 22335163 ~ 22344100 (-) True zgc:113232
XM_043261414.1 mRNA upstream 15549 22812569 ~ 22815095 (-) True si:dkey-23o4.6
XM_043261867.1 mRNA upstream 95082 22892102 ~ 22901187 (-) True cdc42se1
XM_043260054.1 mRNA upstream 118947 22915967 ~ 22929917 (-) True LOC122359864
XM_043260164.1 mRNA upstream 180905 22977925 ~ 22982891 (-) True LOC122359931
XM_043261710.1 mRNA upstream 267725 23064745 ~ 23072189 (-) True LOC122360867
TU170138 other downstream 690181 22087649 ~ 22089054 (-) False eny2
TU170105 other downstream 810700 21964855 ~ 21968535 (-) True G115207
TU170018 other downstream 975431 21801475 ~ 21803804 (-) True G115149
TU170010 other downstream 1074276 21704018 ~ 21704959 (-) True G115141
TU169980 other downstream 1218019 21560221 ~ 21561216 (-) False G115116
TU170599 other upstream 135607 22932627 ~ 22933967 (-) True G115554
TU171080 other upstream 722788 23519808 ~ 23524382 (-) True G115882
XR_006252802.1 other upstream 791165 23588185 ~ 23609841 (-) False usp45
TU171098 other upstream 872878 23669898 ~ 23675298 (-) False mchr2a
TU171232 other upstream 1529687 24326707 ~ 24327973 (-) False phactr4b

Expression Profile