RNA id: XM_043261422.1


Basic Information

Item Value
RNA id XM_043261422.1
length 3807
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC122360634
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 2000781 ~ 2010666 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTCAGGCACTTGCAGGAGAAGTCACTTACCATCTGGACTAGCAGTGGGACAAGACAGGAGAACTTTGAGCTGCACCTGTCCcctacatatacacacacactcaggggAGAGATCACACACAGCCTCTATGTGTGGCTGGGACCAGAGCGTCCTGgcTGCTTCTCATCACAGCTCGGCCATGCTGACTACTGAGGGATCACCCTACACCGTAGACAATGAGGAGCTCAAGATGGATGTAGAGGATGTAGACATGACAAAATGGACGGAGGAAGAGTTTGAGGAGAAATGCACGTACATCGTAAAAGACCACACCTGGGAGGGTCCTCTGGAAAACACAGAGCTCACCCGGGCCGAGGCGTCCTTACCCAGAAACCTGGCATTCAAACACCCAGCAGACTCTAAAGAGGTAATCGGTGTAGTAAGCAGAGAATACATCCCTAAAGGCACACGGTTTGGCCCTCTTGTGGGAGAAAGTTACACTGCAGAAAATGTCAGCAAAGATGCGAACAGGAAGTACTTCTGGCGGATATACTCAAGTGGGGAGTTCCATCATTTTGTGGATGGACTAGATGAAGAGAAGAGTAACTGGATGCGTTATGTGAATCCAGCTCACTCCCAGCAGGAACAGAACCTTGCAGCCTGCCAAAACGGCATGAACATCTATTTCTACACGGTCAAGGCCATTCCTGCAGATCAGGAGCTACTGGTGTGGTACTGCCCTGAGTTTGCCCGTCGTCTCAACTATCCTGCCTCTGGAGAAATTATGATGCAAAAACTCAagCAGAGCCTGATCGAAGCCACACAGCAAGCGACTGAAGTCAAGCACCCAGTGAAAAGAGAACACAGTGTTTCAGAGATTTTGAAAGATGTACTGCAAGAACCCAGCAGACCACTTCCCACCCGTCCCCGTTGCCCCAACAGCCCAGACCGACCTCTTTACCCCAGTGCTGTCTATCCACTCCGCCCTTCCCTAAGCGAAGACTTTTTAAAGACTACCACAGTGTTTGGCCTCCCGAACCGCTCTCACAGAAAGTGTTCAGTGACACCCAGCCCTTCAGCACACAGCAGTCCGGAGAGCAGTCCAGAAAGCAGTCCCACACCAGCATCCCTTGAGCCAAGAGACacccttctctctttctctccagcaCTCTATAGCCGTGGCCTGAACCACTACCCAGGCTACTCACCAGCAGCAGGCTCCATGCCATTCTACCCTAACCCGCACTATTCTCGCTACCTCATGCCCCACTACCCTGTTAGTAGTTTGAGTGGGCCACCTACTTTGGGCGGTATATTTCCACACATGTACCCCTTTTATAGTGGCTTGGTACCCCCTCATGTACCCTTCCCACCTGGCATGCTTCCGTCCGAGGGTAGTCGACAATTTCTGCTTCCACCTGACTCTCCGGCTCCCAGGGACATCCTGCTACCAGCGGCCACCAGTGCCTTTTCTGCAGCCACCTCTCTGAAAGACAAACCAGCTCATGGGCATGGGCATGGGCATGGGCACCCTTATGCTCCCGCTGGTGGGTCCCCAACAGCTGGCTCTGCAGCCTCTACAGGACGTGTTCCTACCAAGCCTACCTCAGCAATCCTAAATACCAGCCGCTCAGAGGAAAAGGCGATCAATCTCAGCAAGATGAAACAAGGCTCCTCAGGCTACAAAAGTCTAGATTACCCACTTAAGAAGCAGAACGGGAAGATCAAGTATGAGTGCAATGTCTGCACCAAGACTTTTGGTCAGCTGTCCAATCTCAAGGTGCACCTGCGAGTCCATAGCGGTGAACGACCCTTTAAGTGTCAGACCTGCAATAAAGGTTTCACTCAGCTGGCCCACCTGCAGAAACACTATTTGGTCCACACAGGAGAGAAACCCCACGAGTGCCAGGTGTGTCACAAGCGCTTCAGCAGCACTAGCAACTTGAAGACCCATTTGCGACTGCACTCTGGTGAAAAGCCCTACCAGTGCAAGATCTGCCCAGCCAAGTTTACACAGTTTGTCCACCTCAAGCTGCACAAACGGCTGCACACAAGAGAACGTCCACACCAATGCCCGCATTGCCACCGTAACTACATTCACCTCAGCAGCCTGCGGCTCCACGTCAAAGGCTACTGCTTAGCGGTTTCTCCTTCCCCCAGCTGCAGTCTTGATGAACTCAATCGCGTAAACGAGGAAATCGAACGCTTTGACATCAGCGATAATGCGGATAGACTGGAGGAAATGGAGGGGTTTGATGTGGAGAGCATGGTAGAGAAACAGATTTTTGGCCTGCTCTGGCAGGAGATGGATTTTAAGGCGTCTTATCACAAAGGTAGCACTGGAGGAGATCTGCACCCCCCACCACCTGCATTATCTACATATCGTCTGAGCGAGCATGGCAGTGAGGCTTCTGTCATCAAGGTTCATTGCAGCAGCCCTATCCAGCTCCTACCTGTCAAGGTTAAAAAGGAGACAGAGGAGGCCATGGAAACCTAGCTAACTAGAGGCTTGCCTGACTAGCTCTCTAGGCCAGGTTATGGACAGCCACACGTATACGTAATTCTTCTCAAAGAATCAGGCTATGGCCTTTATGTTCAGGGACTTGAGTACTCAGGGCTAACAGACATCGTTCCAGTCCATCAGTGGTCCAGTATGTCCGACgcaaattaaaaagacaatcatattcttttattaatattattattattgttgttattaatattatttgctcTTCTtggtgtttattttagtttgatacgtaatctatttaatttattgttcaaCGCATCATCCTTCACAACCAATACgtggaaaaaatgtttacaatgacTGGTTATATCATTgtaatttactgttttatatatttccttttttctttattcttttgtgGATAGTAACTGTAAATAGTGTCCCAGTTGACTGTGATTTCATGCATGACTGCAAAGAGCTCACCACAttcaggtttatttttaatgtgggCTTTGAAGTCAGAGGTAGACCTTTTTGTTgaaggcatttttttaaactataggAGAGGTCAGAGGTTACATATCTATGTGTACGtgttttacataacatttattcTCTTAAAGTTGAGCTCTACACAATATAATAAGTACAAAAAgggcatattatatattaccgACAACTGTTACCTCAAATgtcagagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacggtgtGTGCTTGAACTGAGAGACGTCAGAGTTTGTTTTGCTACTTGAAGAGGAAATCAAATGTCCCAATGTGCAGGTCTACATGTGGTCCAAAGAATAGCAGTCTGTCTAGCTGTCACACACAGGCTGTGAGACTGACACTGCATTTTCTTACTTATGTGTGGCACATTACTGAAACCAAAACGATAAAGAAACGAGAATGTGGAAAAGATAACCAAAGTGAactcttttgtttattttcagagaTTTGTTCAAGTGCAGCGTGAGCTGCTGCAACTGTCTGCTCTGCAGGTCTGTGATGATGTTTATGGACACTCCACATCACTTTGGCCTTTGTATGCACtggttcttttttcttttgtcttacGTTTGtaccttttctttgtttttatgattttgtgtAGCGATATTAGTAGGGCGGTTTATCAGCAACGTGTGCTGCGAGGTAGTAGCGTCTCATACACTTTCTGTCCTAAAGTATGACCAAAGTCTACACCTCATCTtcagctttaaattaaaaaaaaagactgtctttgtttacatactGGTTTACGTAGCTATTTAAGTACAGCtttgacaaaatgtaaattataatataaatcttCACTGATCTAAAGCA

Function

GO:

id name namespace
GO:0060351 cartilage development involved in endochondral bone morphogenesis biological_process
GO:0051155 positive regulation of striated muscle cell differentiation biological_process
GO:0007521 muscle cell fate determination biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0014033 neural crest cell differentiation biological_process
GO:0000578 embryonic axis specification biological_process
GO:0045666 positive regulation of neuron differentiation biological_process
GO:0060037 pharyngeal system development biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24501 PRDM1; PR domain zinc finger protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161742 lncRNA downstream 3474 1736287 ~ 1997307 (-) True G109460
TU161743 lncRNA downstream 3592 1736188 ~ 1997189 (-) False G109460
TU161744 lncRNA downstream 3592 1736287 ~ 1997189 (-) False G109460
TU161747 lncRNA downstream 36620 1741120 ~ 1964161 (-) False prdm1a
TU161766 lncRNA downstream 59628 1940129 ~ 1941153 (-) True G109471
TU161776 lncRNA upstream 208900 2219566 ~ 2225804 (-) True G109481
TU161777 lncRNA upstream 262886 2273552 ~ 2273936 (-) True G109482
TU161780 lncRNA upstream 268350 2279016 ~ 2279655 (-) True G109485
TU161785 lncRNA upstream 390020 2400686 ~ 2400892 (-) True G109490
TU161796 lncRNA upstream 502109 2512775 ~ 2513567 (-) True G109500
XM_043260182.1 mRNA downstream 249809 1741228 ~ 1750972 (-) True prdm1a
XM_043261290.1 mRNA downstream 280666 1718035 ~ 1720115 (-) True med18
XM_043260251.1 mRNA downstream 296060 1684904 ~ 1704721 (-) True foxo6a
XM_043261004.1 mRNA downstream 338154 1656548 ~ 1662627 (-) True nt5c3a
XM_043261003.1 mRNA downstream 340888 1656548 ~ 1659893 (-) False nt5c3a
XM_043260444.1 mRNA upstream 689655 2700321 ~ 2700949 (-) True LOC122360106
XM_043260895.1 mRNA upstream 888647 2899313 ~ 2915431 (-) False sim1a
XM_043260894.1 mRNA upstream 888647 2899313 ~ 2915431 (-) True sim1a
XM_043260896.1 mRNA upstream 888647 2899313 ~ 2908777 (-) False sim1a
XM_043260891.1 mRNA upstream 904989 2915655 ~ 3064578 (-) True ascc3
TU161510 other downstream 1118029 882459 ~ 882752 (-) True G109287
TU161498 other downstream 1367884 632465 ~ 632897 (-) True G109275
XR_006252910.1 other downstream 1705796 294867 ~ 294985 (-) True LOC122361256
XR_006252883.1 other downstream 1722307 278356 ~ 278474 (-) True LOC122361163
XR_006252872.1 other downstream 1722702 277961 ~ 278079 (-) True LOC122361151
TU161934 other upstream 1117395 3128061 ~ 3129979 (-) True G109600
TU162095 other upstream 2084091 4094757 ~ 4095504 (-) True G109724
XR_006252797.1 other upstream 3221545 5232211 ~ 5245461 (-) True vegfaa
XR_006252796.1 other upstream 3224980 5235646 ~ 5245460 (-) False vegfaa
XR_006252935.1 other upstream 3348844 5359510 ~ 5359679 (-) True LOC122361376

Expression Profile