RNA id: XM_043261430.1


Basic Information

Item Value
RNA id XM_043261430.1
length 5005
RNA type mRNA
GC content 0.45
exon number 6
gene id snrka
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 9818586 ~ 9858631 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCGGAGAGCGAGAAGCGCTGAGAGTCGCACTTCCACCAGCAGCAGCCTTTACACACACTGATCAGTACTAACCTCACACTCAtacactcgcgcacacacacacacacacatacacacagggCTGGACTCACACTCAGCCGGGCCGTACCTCCGCCGTCTTCGGATCCACAGCCCGCTGGAACGTTTAGGGGTTGTAAGTGGTTTTAATGTTCGCCGGAACGCGCGGAACCTGCCACCATGGGATTGCCGTTACCAGCCAATGTGCTGAAGTGAGCTGGATTTTTCCTCCGGTTTAAGCCCCACCCCTCCCCCAGGGGCCACTCccccctccatcccaccggagGACCAGCAATCATGGCGGGAATCAAGCGCGGATACGACGGAAAGATCGCTGGACTATATGACCTGGACAAGACACTCGGCCGTGGCCATTTCGCCGTGGTCAAACTAGCACGTCACGTCTTCACCGGCGAAAAAGTGGCAGTCAAGGTAATCGACAAGACCAAGCTCGACACGGTCGCAACCGGTCACCTGTTCCAGGAGGTCCGCTGTATGAAACTGGTCCAGCACCCCAACATCGTTCGGCTCTACGAAGTCATCGACACGCAGACCAAGCTCTACCTGATCTTGGAGCTCGGCGATGGTGGAGACATGTTTGATTACATCATGAAGCACGAGGAGGGACTGAACGAAGAGCTGGCCAAGAAATATTTTGCCCAGATCGTGCACGCCATCTCGTACTGTCACCGGTTGCACGTGGTTCACCGTGACCTGAAGCCGGAGAATGTGGTGTTCTTTGAGAAGCAGGGCCTGGTCAAGCTCACCGACTTTGGCTTCAGTAACAAGTTTCAGCCGGGAAAGAAGCTGACCACCAGCTGTGGGTCGCTGGCTTATTCTGCCCCCGAGATCCTGCTGGGAGATGAGTACGATGCACCTGCTGTGGATATCTGGAGTCTAGGAGTCATCCTCTTCATGCTGGTGTGCGGTCAGCCCCCTTTCCAAGAGGCTAACGACAGCGAGACCCTGACTATGATCATGGACTGCAAATACACTGTACCTGCCCACGTCTCCAACGCCTGCAAAGACCTGATAAACCGAATGCTACAAAGAGACCCGAAGAGGCGGGCATCACTGGAGGAGATTGAGAGCCACGCGTGGCTCCAAGGAGTGGACCCATCTCCAGCCACCAAATACAACACCCCACTGGTGTCTCACAAGAATCTGTCAGAAGAGGAACACAACAGCATCATCCAACGCATGGTGCTGGGAGACATCGCAGACAGAGAAGCCATCATTGAAGCCCTGGAGACAAACAAGTACAACCACATCACTGCTACTTATTTCTTGTTGGCTGAACGGATCCTGAGGGAAAAGCAGGAGAAAGAGGTGCAACCTCGTTCTTCCAGCCCCAGCAACATCAAGGCCCACTTCAGgcagTCATGGCCAACCAAAATTGACATGCATCAGGACATTGAGGACAGCTTAGCGTCTTCGTCCATCTCTCATGCTGGAGGTCCACAGTCTCCTGCTCGCAGTACAGAGAATCTGCTAAACGGTCACCGCAGTAAAGGTCTTCTGGAAGTGAACCGTAGAGAGGAAATTAGCGAGGCCTCCAGCAGCTCTGCTTCACCTGCTGCTCTGCCCCCAAACCCCCTCAAACCTGGGGTCATGGCCCCACTTGCATCTGCTTCAGCCAAGCAACGAACCAACCTCTTTCGGGTggaagaagatgaggaagaggaggaagaacaGGAGCCTTCACCATTGTCCACTCAGGTGGTCCTACGTCGTAAACCACTGTCCATCACCAACCGGCTTACGTCTCGAAAAAGTGCCCCAGTGCTCAATCAGATCTTCGAGGAGGAAGGTGAATCAGATGATGACTTTGACATGGACGAGAGTCTTCCGCCCAAGCTCAGCCGGTTGAAGATGAACATGGCATCTCCTGGTACAGCTCAGAAGCGCTACCACCGGCGCAAAAGTCAGGGCCGCGGTTCAAGCTGCTCTAGCTCTGAGACCAGCGATGATGATTCAGAGAGCCATCGCAGACGACTAGACAAAGACACAGGGTTCACCTACAGCTGGAACCGCAGGGACAGTAGTGAGGGTCCACCTGGAAACTCTGGGGGCAATGGGGGTGGTAGTAGCGGAGGACAGAGCAAGCCACCTGGGGAAGGCAACTCGGGACCAGACAAGGGCAGCCCTCCAGGAGGAGGGAATGGTGGTAGTACAGGAGGGGGTAGTGGAGGTGGTGGGAGCACAAAAGGACAGGGAGGCCCTTCCAGCTGTTCTCGTAGCAGCAACAACGCTTCGTCTGGCTCAACGCGTAGTGCAGCTCGGAGTGCGGGGGAACTGGTAGAGAGTCTGAAACTCATGAGTCTGTGCTTGAGTTCCCAGTTTCAGCATCGCAGCtctggaggaggaggtggtggacGATTTATCCTAGATCCTCAGAGCCTGTCAAGCGTTAAAGTCCAGGAGAAGTCCTCCTGGAAGATGTGCATTGGCTCCAACAACAGTCTAGACAAAGTAATCAACCCTGCCTTGAATGGCAGTGTTGGGGCAATGGAGCATTATCAAGACCAAACGGCAGTCATGTTAAATGAACTTGGCCTGGTCAAGGAGAACAACCTgaacttaaaaaataatgttctcCAGCTACCTCTGTGTGAAAAGACCATCTCCGTGAACATCCAGCGAAGCCCCAGAGATGGGCTACTCTGTGCCTCAGCCCAGGCCAGCTGCTGTCAGGTCATATGATGGCATGGCACACGGCTGGTTCTCAGAGTGGATTGTTCCTATTGCCACATTTGTAGCATATGATGACTTGAGTTCTCCACCAGTAGCTGTACATGACCTCTCTTGATCCCGACTTGACCTTTAAACCTGCCTTCTATGTCGTCTTAATCATTCTCACAACTTATTTATTAAGTTCTTCTCTTGGAACCATTGGTTTTTAATGAAGTGCACGCTGCTATACTTTTCTTTATTgtgtctttatttgttttgcccAATTAgactttaatatttgttttccaaGTCCtgttcattttgcttttttagcCCTTGAAATTAAACTCTTAATATGAATTCCATGGTTCAGACACCACCCAATCAGTCAAGAGTTGTGGAAGctgcatgtataaataaattacctTTTAATAAAGTGAGATTTAAATTAAGACCAACAGTATGATAGAACAGAACATGGCAATTCGTTAAACAAGCACTTAAAGAAACTCAGCCACAACTGGTTTTGTAAATTTTAGCCCTGATATGATTGTAATGAGATggtaatacagtaaaagcaataGTGAAAGTTAagaacaaaccttttttttaattcatagtGCTGTCTGAAGAGTCTTAAACTGGATGACcattttgcacactttttttcaccttttttcaAGTGCTATTGACTGTTTTAATGTCACCATTTAGAAATGTTTAGATATAAACGTTTAAGGTTAATGACAATCAGTTGCAATAACAAGggatatttttaatgacttaTTTTCCAAAAGGGGGCTACATATAtcccaaattaaaaatgttttatttgaataactTTCACCATTGATTCACTTCACACCAAATCACTTTTTTTGGTATATTTCAGTAAACATTTGGGATTTAAGTGCAATTTATACATGTTGTTAAATTTCATAATTCCATCTGTGGCATGCCCTCTAAGTAATAATGTTTTGCCGAATTTGCTACCCAGACAGCACTGTGGATGCACCCACACATTATTGTGTTCATCCTAGTTcttaatcaaattttaaaattagtCAGAATAAGTAGAGTCTACAATTAGGATACTTTGAATACCATACAAATCACAGCGGGGGTAATTAGCCTTTACAAGGCTGTTTCTGCCCGAGCAAAATCAAACCTGCAGACAGCGAGAGTATCCAGTTTGTGTACTACAGAATACCGTTGAGTCAATagagaaattattttttcattaaggACTCTTTTggcttaataaataattttcggTTCCTGCCCATAATCTCCATCTCAACCCTGTTGTTCTTGTACCATTCAGCTTTGAGTTACTGTATATACCAGTCTCAGAATCGACTGGCCTTAGGGGATGTTTATaagtatgtacatatatttttttaaaagtttatttttttgaaagaactgctgttttaaaatgctgttttggatGCAAGCCTTTAACTGGCTTATAGTTGGGATAAAATGGGGCTTTTCTGTCACCTGGCCACTcgatgataaataaatgcatggtaTGCCTTCTATTCAGTGGATGGCCACTCTTTCAGGAAATATGGCTTCAAGAGTTGGCCATTGGGTGACCATCGACTGGTATAGAAATAAGTTAAAGCTCTATAGGACTGTAAGTGTGAAAGAATCGGTTTGCGAGATTTAAAGGGCATTTGCAATAAGCTAAGCTATAAGTTGCAGCtatgtgtaaatataattttcttttgtttttatatttcagaccTGTACATCCTTCAAATGGCTCACTTGACCCAAATTATCTTAagcatttctgtttgttttgtctttttgtttttaaaaataaagtctgtAAATATTGGTGTAAATATGGTGCTCTACACTTAGAAATGCAGTGTTGGACTTCTTGTTCATAGCTGTAATATAGCCTTATTAGATATGAGTGTCAAAAACAGAGCAAGGGAGGttgaaaagaaaacagtgcTATATGCATAATGTCAGTCTCTGACTTTGTCCTACCCTAATGTAAACAGCTAAACGACATGTGCATGTGTTGTGCGTTTGACATTATTGATCCACGTTCATTCAGACGAAAAGAACCACCACAAAATGTTACAGGACCAAACCATGTACtgacgttaaaaaaaaaaaaaaaaagtaaaaaaagagaaaaacaactttgaaaaagcaaaatgaataaatgttctGTTGCTGAAACTTGTCTTTAAAAGTTACATATAGCTATGGTGATGTccagaattaaatgtgaaatatgttgTCTTTAAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08802 SNRK; SNF related kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164002 lncRNA downstream 63606 9754315 ~ 9754980 (-) True G111048
TU163998 lncRNA downstream 142081 9674864 ~ 9676505 (-) True G111045
TU163971 lncRNA downstream 194467 9623700 ~ 9624119 (-) True G111025
TU163969 lncRNA downstream 198133 9620119 ~ 9620453 (-) True G111024
TU163966 lncRNA downstream 211513 9599932 ~ 9607073 (-) True G111021
TU164072 lncRNA upstream 17368 9875392 ~ 9875664 (-) True G111097
TU164073 lncRNA upstream 21611 9879635 ~ 9888229 (-) False gask1a
TU164074 lncRNA upstream 31047 9889071 ~ 9902981 (-) False gask1a
TU164327 lncRNA upstream 872144 10730168 ~ 10730415 (-) True G111298
TU164374 lncRNA upstream 933540 10791564 ~ 10793616 (-) True G111329
XM_043261435.1 mRNA downstream 31494 9778317 ~ 9787092 (-) True abhd5a
XM_043261852.1 mRNA downstream 103935 9705840 ~ 9714651 (-) True tcaim
XM_043261087.1 mRNA downstream 116319 9678223 ~ 9702267 (-) True trim71
XM_043261436.1 mRNA downstream 189540 9627246 ~ 9629046 (-) True ccka
XM_043260593.1 mRNA downstream 294589 9411383 ~ 9523997 (-) False ulk4
XM_043261423.1 mRNA upstream 19187 9877211 ~ 9902814 (-) True gask1a
XM_043261427.1 mRNA upstream 46449 9904473 ~ 9914342 (-) True entpd3
XM_043260001.1 mRNA upstream 71312 9929336 ~ 9945606 (-) True ddc
XM_043260661.1 mRNA upstream 89327 9947351 ~ 10010750 (-) False grb10b
XM_043260658.1 mRNA upstream 89327 9947351 ~ 10010750 (-) False grb10b
TU163906 other downstream 545981 9270971 ~ 9272605 (-) True G110974
TU163829 other downstream 666403 9145930 ~ 9152183 (-) True G110911
XR_006252934.1 other downstream 1171031 8647414 ~ 8647555 (-) True LOC122361375
TU163623 other downstream 1182364 8633350 ~ 8636222 (-) True wu:fj39g12
TU163343 other downstream 1501901 8312265 ~ 8316685 (-) True G110556
TU164366 other upstream 888769 10746793 ~ 10748300 (-) False LOC122361037
TU164396 other upstream 1003927 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other upstream 1003927 10861951 ~ 10866428 (-) False LOC122360812
TU164545 other upstream 1412640 11270664 ~ 11286432 (-) False G111450
TU164609 other upstream 1552654 11410678 ~ 11411777 (-) True G111490

Expression Profile