RNA id: XM_043261478.1


Basic Information

Item Value
RNA id XM_043261478.1
length 1967
RNA type mRNA
GC content 0.48
exon number 10
gene id fli1rs
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 20580282 ~ 20592827 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGATGCAGGTCCCCACTCTTTCCTTCTTGTACAAAATTTCCTCTTCCTTCCCGTTCGTGGTTGAATGTCGGCTCTTTAATAACACAAGAAACCGCTACAACATTTAGACTCAGATAAAAAACGAAATGGTGTCCGCAGCGCGCGCGAGAGGGAAGCTCTATCAGTGGTGAGTGAGAACCAGTCCATTTTCGAGTCACCCTTCAGCGGTCCCCAGGCCATGCACATGAAGGGAGAGATCACCTCGCCTGCAGTGTTCAGACAGGGTTCTGAAGAGAGCATAGAACCCACTGAGCCAGACTGGACTGGATCGGCCACACAGAACCCTGCGAAGAGAGCAGAACACATCAACGGAACCAGCCGTGAGTCCCCAGTGGACTGCAGCGTGACTAAAAGGTCCCGACACATGAGTAACAGTGATGGGGGACCGATGGCCTACCAGGCCTCTTACCCAGAGCCACGGAGCAGCCCGCAGACTGCCACCCCGCCCAGCAGCACCACAGAGGAGAAGAGGGTCATTGTACCAGCAGACCCAGAAGTATGGACACAAGACCACGTGCGGCAGTGGGTAGAGTGGGCAATAAAGGAATACGGCCTTTCCGATGTGGACGTGTCTCTGTTTCATActctgcatggaaaagagcTCTGCAAAATGACCAAAGAGGACATGATGCGTCTCACTACCGCATACAATACAGACATCCTGCTCTCCCATCTTAACTACCTCCGGGAGAGTAGCCCCACTTTTTCCTACCCAGCAACCCCTACCAATACACAACCTCAGCCTAGACTACAGGTTAAAGCTGAAAACAACTTTGAGGAGATCGGCAGAAGGAACAGTTGGTCCTCAAATGCCTTACCAGCTGTCCCAAAAGGTTCTCCAATCGAACATCAGCACAACACCAGAATTACAGAGCCTCCACCAAGACTTCCACAAGACCCCTACCAAGCATTAGGTCCTATTAGCAGCCGTCTTGCAAATCCAGAAACGAAACCATTCCACACCAAGATCCGACCGACCAAACACAATTCTAACAACCTGCCCGTCACCAGCACTGACAGGACTGTGGGCTCTGGTCAAATCCAGCTGTGGCAGTTCTTGTTGGAgctgctttctgacagcaacaATGCCGCCATCATCACCTGGGAGGGCACTAATGGAGAATTCAAGATGACCGACCCAGATGAGGTGGCCAAGCGCTGGGGGGAGCGGAAGAGCAAGCCTAACATGAACTATGACAAGCTCAGCCGGGCCCTCCGCTACTACTATGACAAGAACATCATGACCAAGGTGCATGGCAAACGCTATGCATACAAATTCGATTTCCAGGGCATCTCCCAAGCCCACCAAAACCATCCTCCAGAAGGGGGCGTGCTCAAATACCAGGCTGAAGTGCCGTATGTGCAAAGCTACCACAGTCACCAGCCAAAAATGAACTTCATGGGCACTCATTCAACCCCTATGCCCGTTTCCACTGGGAATTTCTTTGGGCCTCCAACCACCTACTGGAACTCTGCAACCGGAGTGGTCTATCCAAGCTCACCCATGCCACGACATCCCAGCACTCACTCTCATTTGAACTCTTATTactaaaacaatcaaatttTTAAGCCCTGGATTTCATATCATAACAAAACAGCAACTATTCTTGATCCCTCATCCAGTGCAAAAACATTTGTAGCAACTCCAAACAGTTCTCCATCTCACTCCATcttttgtacagtatatatatgcatatcaAACAAAGCTGTACGTCTTCTGGGCtaaattgtaaatatgtcatgcatgttttatataagGCATTGAAAGGACTTCTCTAACATTGCCCAAACCCATGCATACTCatctctgttttaaaatgtaatattcctTTGTAAGCATGTtcttttttgtacagttttctttaaatcaaATACTTTGCCCAATGTAACGTTATATTTCAAACCAATAAACCATGTAGCTCACTTAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048514 blood vessel morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169652 lncRNA downstream 3008 20576686 ~ 20577274 (-) True G114888
TU169585 lncRNA downstream 60156 20500520 ~ 20520126 (-) True G114853
TU169500 lncRNA downstream 94155 20485895 ~ 20486127 (-) True G114804
TU169499 lncRNA downstream 94557 20485396 ~ 20485725 (-) True G114803
TU169497 lncRNA downstream 96211 20483801 ~ 20484071 (-) True G114801
TU169622 lncRNA upstream 43586 20636125 ~ 20637340 (-) False scn1ba
TU169621 lncRNA upstream 43599 20636138 ~ 20637340 (-) False scn1ba
TU169682 lncRNA upstream 84515 20677054 ~ 20680221 (-) True G114908
TU169699 lncRNA upstream 131632 20724171 ~ 20725671 (-) True G114924
TU169727 lncRNA upstream 176205 20768744 ~ 20769087 (-) True G114943
XM_043260196.1 mRNA downstream 188416 20389474 ~ 20391866 (-) True si:ch211-215k15.4
XM_043260302.1 mRNA downstream 192666 20386077 ~ 20387616 (-) True pkdc
XM_043261880.1 mRNA downstream 194826 20379180 ~ 20385456 (-) False herpud2
XM_043261881.1 mRNA downstream 194991 20379180 ~ 20385291 (-) True herpud2
XM_043260151.1 mRNA downstream 267043 20305818 ~ 20313239 (-) True dpy19l1l
XM_043260848.1 mRNA upstream 11550 20604089 ~ 20607902 (-) True si:ch211-225p5.8
XM_043260667.1 mRNA upstream 43591 20636130 ~ 20650937 (-) True scn1ba
XM_043260665.1 mRNA upstream 43591 20636130 ~ 20650865 (-) False scn1ba
XM_043260715.1 mRNA upstream 88886 20681425 ~ 20686877 (-) True mtdhb
XM_043260713.1 mRNA upstream 107458 20699997 ~ 20706330 (-) True ubxn11
TU169487 other downstream 127832 20441965 ~ 20452450 (-) False G114793
TU169489 other downstream 127832 20441965 ~ 20452450 (-) True G114793
TU169372 other downstream 412668 20166795 ~ 20167614 (-) False G114715
XR_006252818.1 other downstream 1159188 19416962 ~ 19421094 (-) False cd22
TU168715 other downstream 1759194 18815216 ~ 18821088 (-) False rpz
TU169673 other upstream 59438 20651977 ~ 20653574 (-) True G114901
TU169801 other upstream 420068 21012607 ~ 21017105 (-) True G115003
TU169949 other upstream 783351 21375890 ~ 21378836 (-) True G115093
unassigned_transcript_2161 other upstream 816405 21408944 ~ 21409025 (-) True trnas-aga_117
unassigned_transcript_2162 other upstream 817421 21409960 ~ 21410031 (-) True trnae-cuc_38

Expression Profile