RNA id: XM_043261481.1


Basic Information

Item Value
RNA id XM_043261481.1
length 4185
RNA type mRNA
GC content 0.48
exon number 30
gene id otoa
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 14568314 ~ 14581242 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGCAGTACACTTGTATCATCTCAAGATCATCGCATCACGAACCTCATTTGGAGAAAGAGAACAGGGAACAGCCAAATGGGGTTATACAGGAGGTTCTGATCCTCTCGTTTCTAGTCCAGTGGGCTACGGTAATGTCACAGGGTATGAAGGAGATGCCCTTCAACCAGTCAATAATAGGATTTCCTAGACTGCCTGCAGACTTCAGGGAAATGGCCAAGAAACTGATGAGCGCATGCTTCAAGAAAGGTCACCAGGTGCCTGTTATGAACAATTCAAAGAACAGCTCATATGGACAAATGATGGCGAGCCCCATCTCTATTTTTCCAGAGCTTCTCTCCTCGCTCACTCAGTCTGTCCTCTCTCAGCCTAAACCAAAGATTAATGAAACAGCAGGGGAACAGGACTCAGTCTGGAACATTGCTGAGAAGATGCAGAACTGCACCAACTTGGGCCATATGATTGATCTCATGAGGAATAGTTCGGAAGGTCCTCGATGTTTTATGCAGGCATTCATTGCTCCTCTTTCCTGGATGGCGATCGTGCAGAATGGAACAGACCTCAGTAAAGAAGATCTCACAAAGCTTTTATGGACGTCTAAACCCTTCTTAGAAACAATGCCTCAATCTAGCTTTGTGTTGCCAGCGTTTTCACAAAGCTCTCACCTGGCTGAAACGATGAAGGTGTTTGGTGAAGTGTTCAGCGTTCTGTCTGAGGAAAAGAGAAATACGGTTATAGGGTGGATCAAAGAGAGAGTTAcgttaaatgaatttaaatgccATCTGAAAGCACCTGCCTTCAGCACCCAGCCTTCAGGATCACTGGAAAAACCTATCATACAAAATGGCCCATCAGTCAGAGCAGAGATGACTGGGATGAATGCAGGAGCTCAAGGGACTCAACATGCAATGATGAATGcttcaacAGCTGTCCATATATGCCCTTCCAAAATGCAGTGGTTGAACTCTACGGTGTTGACAATGATGGGGCCTTTTCTATCTCGACTGTCTTTAGAAGAAGCAAAGGCCATCCCTAAGGAAGAGctaTGCGGGTTTTTCAGGACTTCAGATTTTCCTCCATCATTTCAAAATGCTAACGGAATACAGCCTGCTCTTGGTCGAACACTTTTTCAGCGTTTAAAACAAGAGTGTTCCAGCACTGACAATTTCACTCAAAACCTGGACAGGCTGGGCTCTTTGGCTTGTTTCTTTGATGGTGCACAGTCTCTGAATCTGAATTTTAGTAGAAAACTGCTGTCTCAGATTGAAGCCTGTAACAACCCTGAAATAGACAAGATGAAAAGACAGCTAGTACAGAACATTCTGAATGATGGCAGTTCTTCCTCTCCTGAGCTTCTGCTGTCTCTGGGCTCCGCCGTGTCTGCCCTTCCTCTTTCCCGTCTGTCCCGCTTCACCTCTGAGGACCTGAACAATACCCTCACCAGCTTGAGTCAGGCCAGTTGGAGCCCAGCTCAAGCTAAGACTCTGGCTAAGAAACTGTTGGAAGCTGCTAAGAATGTAAGTGGTGAGAAGTTGTTGTCTCTGGGTACGGTGGTGAGAGGGGTGGCCAGTTCCGTCCTCAAGAATGTGAAGGCAGAAGGGCTGCTGGGAAATCCATCCCTGAACAATATGAGTGATAAGATGTCCTCCCTACAAAAAACAGCACTACTGGAAGCGTTCCGTCGTGATGTGAATGCATCTGTGCTGGTGAAGGGGTTGCCAGattctctcctctcttctgtGCCTCTGTCCATGCTGGAGAAGGCAGACCTCAGCTCCGTGGATCAGCTGCAGGGACGCGGATGGACTCGTGCTCAATCAGCTTTCCTTCTGAAGAAGATTTTGGGTAATAAGATCAGCCTTAGTGAATTACGGAAGCTGGGTCAGGCTGTACAGGGTGTCACTTGtgaaatgattgaaaaaatCAATCGAACTGATGCTTTGGAAATGGCACAGACACTTAACAATTCCTGCGCATGGCTCTCCAGGGTTCAGATTCGCTGTACAGCTCAAAAGCTCTTTGCCAGCTTGGAGGAACAGAGACCAGGATATTTCAATGACGTTAAAAACTCTGAGCTCCAGGCCATCCCAGCTGTGCTGCTCATCCATCTACCAGTGGAGAAGATTCAAAACCTGTCCGATGCCGTGTGTCCTGCTTTCATGGAGAAGATGAATCAGGTCAACCTGTCCTTTCTACCAAACAGCTCTCCAGCACGCAGCGCACTTACCAAAAGAGCCATCGGCTGCCTGAAGAAGAATGCGTCTGATCTGTCTGCGGCGGAGGTTTTGACTCTAGGTCCTCTGCTGTGTGAGCTGGACCCTGTCTGGATTTCCTCTCTGAATCCCGCGGCTCTGAACTCCACTCTGCAGGCTCTCGCCTCCTGTCAGTGTATCCAGCAACAGCACAGAGAGCATCTGTTCAGGCTGCTCACGACCACCTTCGGGGACCCTACTTTATGGTCAGAGGAAGATATGAGGGGGCTTGGGCCGCTTTTGCTACTTAATGACACAGCCATCGAAAAGCTGCCACCCAAAAGCTGGATAAAGTCATATCTGTCAGACCTGATGAATAGTTTGCCGACTCAGCCTGCAGTTCCTCCTCCAAAGGAGTTCCGCTCTTGGTTCGATCTCTCTGCATTTCGTCGCAAACTTTTCGACCTCAAAACGAGTAGCACGCTACAAAACCGCAGGAGGCGTGAAGTGGTGCCCTCCCTAACAGAGCCCACACTCATATATATTGAAGATCTCAAACAGGGGAACATATACTGGAGTCCAGCCCAGTTCAGTAAAATGACTGTGCAGGCTTTCAAAGATGGTGTGCCGACATTAGGAGAGATAACCAACTACAGCACAGAACAACTGGCTGCACTCAGACTCAAAACTGtggagGCTTGGGGGAGTGTGTCCATGTGGAACGAGTCTCAGATCGCGGATCTGGGCTGCATCTGCCAGGGCTTCAGTGCTGAAGAGCTGAGCAACCTCAGCATTGCCTCACTGGACACTCTAGAGACTATGACCACCTGCAACTTTACCCAGACGCAgAGGACATCAGTCTGGCAGGTCTTTGAAAGGGTGGCTGCAATCAATGTATCTAGACTGGGACAGCTGGAGATGGTGGGTCTGGGGCAGTTTATCTGTGGTCTGCAGCCTGGCCAGGTCGATCAGCTCAATTCCCTCAGCTTCAGGGAGTCAGTAGAGGCGGTGGGTCGTGCTCCTTGTCCTTTGAACATTAGAGAGCGTCTGAAGGAAAAAGCTGTGGCTGTGTTTGGAAAGTCACAAACATGGACTGAAGCTCAAGTCAGCGCTATGGGCAACATCATCGCTGGTTTAAGTGGTGCCGAGCTGGGAAGTCTAAATTCATCTGTCCTGTCATTCATTCAGCCGTCCGCCATCCCTCTCATATCCTCGGATCGCTTAGCTGCACTGTCAGTCAGCCAATTGAAGGCTTTGGGTCCTGACAATGCTGCGGCAGTAACAGAGGCTCAGCGTTCAGGGCTGAAAGTCGATCAAAATGCTGCACTGGATGAAGCTGTGGGGCTAAAAACTACACGTAGTGAGGTGTCCACTGGAAACGCCACCTCAATCTCCAGTCCAGGCTCCGGCTCCGGCTCAGGCGGATCAGCCACGCTACCACTAAAAGGAGGTGCAGCTGTAGAGAGCATGGCGGGATGTGTCCTCCTCATGCAGGCCATTGCACTGCTGTTGTTTGGATACATTCTCTAAGGCGCAGAAAGGTCAAAGGCCACCGCCTGCCATGTGTCCAATGACAGAGGCTGATGTATGATCAACCAGCAAAGCAGTAGATTTAAGAAATGCTATAATCGCTTCGtttcaaaactttatttaacactAAGTCACTGATTGCACATTTAAACTCAGTGATTAGACCCTAACCAAAGATAGCACGAGATGGTGAGATGGGGGTTTGACAAAATGCGGGTCTAGCCTATCTTTAACTTTAACTATAAAGAGaaattatatttgataatattgctatttgggtttttttcaaatgcacatCTGTTATTATTccatgttattatttatgtgaGTAAACCCGGTGTGTACTTCATTAAGGTGTATCTGAGatgaagttttattttcagttatttaattgcagttaaatgtttgtattagaGGTCGTGttctatttaaaatcatttatacCTAAACATAAAGGTTAATAAA

Function

GO: NA

KEGG:

id description
K25029 OTOA; otoancorin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166305 lncRNA downstream 69570 14498526 ~ 14498744 (-) False dicp3.3
TU166260 lncRNA downstream 240111 14327952 ~ 14328203 (-) True G112612
TU166037 lncRNA downstream 264779 14303124 ~ 14303535 (-) True G112483
TU166033 lncRNA downstream 271742 14292739 ~ 14296572 (-) True G112479
TU166022 lncRNA downstream 357375 14210693 ~ 14210939 (-) True G112474
TU166339 lncRNA upstream 1237 14582479 ~ 14583312 (-) False LOC122359961
TU166340 lncRNA upstream 1237 14582479 ~ 14583312 (-) False LOC122359961
TU166341 lncRNA upstream 1237 14582479 ~ 14587869 (-) True LOC122359961
TU166328 lncRNA upstream 10120 14591362 ~ 14654150 (-) True G112659
XR_006252747.1 lncRNA upstream 51972 14633214 ~ 14638332 (-) True LOC122359963
XM_043261381.1 mRNA downstream 11249 14544847 ~ 14557065 (-) False setdb1b
XM_043261380.1 mRNA downstream 11249 14544847 ~ 14557065 (-) True setdb1b
XM_043260549.1 mRNA downstream 23572 14540215 ~ 14544742 (-) False LOC122360165
XM_043260548.1 mRNA downstream 23575 14540215 ~ 14544739 (-) True LOC122360165
XM_043260546.1 mRNA downstream 35370 14526845 ~ 14532944 (-) False LOC122360164
XM_043260210.1 mRNA upstream 1237 14582479 ~ 14583349 (-) False LOC122359961
XM_043260209.1 mRNA upstream 1237 14582479 ~ 14583349 (-) False LOC122359961
XM_043260201.1 mRNA upstream 62646 14643888 ~ 14650892 (-) True il6r
XM_043260197.1 mRNA upstream 70331 14651573 ~ 14677758 (-) True atp8b2
XM_043260203.1 mRNA upstream 101586 14682828 ~ 14688168 (-) True aqp10a
TU166030 other downstream 266695 14234554 ~ 14301619 (-) True G112478
TU165859 other downstream 884405 13654060 ~ 13683909 (-) True zgc:92606
TU164609 other downstream 3156537 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 3281882 11270664 ~ 11286432 (-) False G111450
TU164397 other downstream 3701886 10861951 ~ 10866428 (-) False LOC122360812
XR_006252733.1 other upstream 328083 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 887238 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 887238 15468480 ~ 15496375 (-) False rps19
TU167051 other upstream 887238 15468480 ~ 15495722 (-) False rps19
TU167049 other upstream 911579 15492821 ~ 15496375 (-) True rps19

Expression Profile