RNA id: XM_043261486.1


Basic Information

Item Value
RNA id XM_043261486.1
length 3318
RNA type mRNA
GC content 0.43
exon number 6
gene id ptp4a3b
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 18566051 ~ 18589702 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCATGGTTGCAGCAGGGGAATCTCCGCTCTCGCGTGCGCACACGCACCCgtacacacgcgcgcacacggGTACACGCTGAATCACATGGAGCGAGTCTGACAAATCTCTTTCTTCTCCAGCTTCTTGTTCGTTAATGGAGTTCCGGCAGGGCAGCGGTGATTACTGCCACGCCCAACATCGCATCGCTTGATCACGGGTGGACATGCCCGAAATCTGCCACTGAATGTTCAGAGATACGCCTTCTCTGCTTTTCTCTTGCTGGTCTTTCTGACTGACCACTTTGCTGTGCGCCAAATGGGTTAATTGGCATCGTGGCACCTGGCATTTAGCTACCAGACTCTGTTCCACCCATCTAGCTGCCCCGCAGAGTGTCCCTATCAAGAGGACAGGGAAGACGCTTGTCGCCTCGATTTACCAAGAAAGGCAGCTTTCAGATTTACGTACTGATTAGTAGTGATTTGTCACAGAGGATCCTGCAAATCCCTGACACTTTCACTGTGATAGTGCATCTGCTGTAAAACTGCTCTAGGTCAGAGTAGTGCCATACTGTGAGTGGAGCTGTGTGGATCCTGGCCCGGATTGGGTGCTCTTTTCTTCTGTAGTGTGGAGGGACACCAGCATGGCCAGGATGAACCGTCCGGCTCCTGTCGAGGTCTGCTACAAAAACATGCGCTTCCTCATCACGCACAACCCAACCAATGCATCACTAAGCAGCTTCATTGAGGATCTGAAGAAGTATGGGGCAACAACAgtggtgcgtgtgtgtgaaatcACCTACGATAAGACACCGCTGGAAAAGGATGGGATTACTGTTATGgaTTGGCCTTTCGATGACGGCGCACCTCCTCCTACCAAGATCGTGGATGATTGGCTTAGTCTGCTGAAGAATAAATTCTGTGAGGATCCAGGCTGCTGTGTGGCTGTGCACTGTGTCGCTGGACTGGGCCGGGCTCCAGTGCTGGTGGCTCTGGCACTTATAGAGAGTGGAATGAAATATGAGGACGCCATTCAGTTGATCAGACAgAAACGCCGGGGCGCAATCAACAGCAAGCAACTGACGTACCTGGAGAAGTACCGCCCCAAACAGAGACTGCGTTTCAAAGACCCTCACAACCACAAAAGCAAGTGCTGCCTCATGTGATCCGGTCTCACCAGCCTGCCACTGAAGGAACCATTCACTCATGGACTAAACCAGACTAAAATTGCCAATCTAGTGCATTTGAACTCTTGCTACAATTCAGGAGGGGGAATTCAACCCCCTTTTGGTGTACATGTCAGACCCCTGCACACAGGGTCTTCACCAGCTCAGGGCTGTTAAAGACGAGCCTCTTGAATTTTGTCTTTACACACAATCCCCCCCACATCCTCACGGTGTTCACAAATCTATTGTGAACAGCTAACATAAGCCCGATGCACACACTTGTGCTACCAGCCGTCACACTTTACCAGCAGCACACAGTCCAAAGATGATGGCCACCAAGCCGCCTGCTCATAGAACTCAATCACTGCTGTTATTGCTCATGCTTTTGTATGAAACTGCTTGACTACcctgttctttctcttttgtaattttgacatttcagaATGCATGTcgctgtaattttatttttgtttttttgaaggtTGCGTGTGGCCTAacctagctttttttttttttttttttttttttttttttttttcctcctccctATGTTGTATCatggattcatttttttttttgcaccactggctgcttattaatagaACTGTGGGCACCTGGATGGATAACCGCACACTTTGACCTGACTTCCAGGTTTCTGGATGTTTTAGCTGCTTTGAAATCAGGTTTaagctcataaaaaaaaaaaaaagaaatgaagctAATCTGATACACTTCTGTACCACTGAATTGCAGCAGTGATCTCGGACAAATTCAGGAGTAAGCACAATTGTAGCTCATTAGTTCTGTTTTAAATTAACACAGCAGCCACAAGAGGGAGTTGTCAcataatgcatttcatatgaatttttatttttttggacttgcctgtgttttttgtttttgtttttttgctatttgCACGCAGTGCTCATGCGTGACTTTCTCACTGACATAGCTGTACTGTGGACACGCTTATTGTGGAACTTGAGAAGGAACTTTTCGGAGTGAGgcctaaaatatttagttatttctaTGTTGTAGGAAATGAAATGGAATTGCAGGATCTCTGCCTAAGGAATGAAGGAATAAAAGGTAATGAATCTATGTCAGGTACTGACATGATCTCGCATGCATCGTCAACCTGCTAATATGAAATGCATAAGACCTTGGATCTGGGATGGCGACATATTTCTCTGCCTTTGAAATCCGAAGCAAATATTAAGGAAATATCTAATTAAAGAGGTTATTTGCTTAATTGTGACTGTGAAAAGGATAAGCAAATACTTGTTTCATGGATTAAGGTTACATTTGCagattattatattcatttggGCTCATGATTACCTACAAAAGCAACGGCTGGAAAACAGACATATTTAAAGTTAAGCTCACTTCAATTTAGAGCTGAGCTTTTAGACAGGAGATCAAGCGTTTATCAAGTTTGCATTTCTGGTTTTACAGTGGGTcccatttaaagaaaaaaggtatGAATAAAGCAGCTCAGTGTTGCTCAGATATATAAGGGCTTCTCACGTACTGTTTAGTCACTTTTATTACTGTTGAGTGTCTGCATTTACAAATCTGGAATGTTTTGATGAATTGTGGCCTCAATAAATGTAATGGTTCATCTTGGAATGTCTCTGGAAACCGATGCGATCAGCAAAAGAACAATCAACGGTAACATTTTCAGGAATATATTTAGACATCATCGTTAGTCCTGCTTTTGTGATGAAGGATGGTGCAAGACTACACCCCAGGTCTCAAGTTTATCCTGACCTCGTGGTACTGAAGACCAAGACATCCACGAGAATGCTGTTCGAACAAAATAAGAAACTGAATGATACAgtgtcagaataaaaaaatcgtTTCTGTAACTACACCGCGACTCCATAGAAAGATTCACTGATCCACTGGTTTCCTGATCATATCTGAAGTGGCCTCTTTGATATTAACATATTGTATTACACGTTTTTGTTAAACAGTGATACATTAATGATCTATTATTCCCTGTTCATATTTAAAGTGATTGACATTAttgtattattcataatttttcaaTGCCAAACAAAAAGTTAATTGATGTACATATTGCTCTTTTATGAAATTGGAACAGATATTAAGTCTGAAATGTggattaattacaaattaataaaaacctgTTATTTCTCACGCGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168638 lncRNA downstream 17112 18548188 ~ 18548939 (-) True G114231
XR_006252807.1 lncRNA downstream 21371 18528871 ~ 18544680 (-) True LOC122360486
TU168419 lncRNA downstream 190437 18373968 ~ 18375614 (-) True G114075
TU168395 lncRNA downstream 326782 18195515 ~ 18239269 (-) False lmna
TU168370 lncRNA downstream 370883 18164406 ~ 18195168 (-) False LOC122360777
XR_006252842.1 lncRNA upstream 97464 18687166 ~ 18688395 (-) True LOC122360941
TU168682 lncRNA upstream 150052 18739754 ~ 18740829 (-) True G114259
TU168713 lncRNA upstream 223518 18813220 ~ 18821088 (-) False rpz
TU168711 lncRNA upstream 223527 18813229 ~ 18821088 (-) False rpz
XR_006252755.1 lncRNA upstream 395701 18985403 ~ 18987922 (-) True LOC122360016
XM_043261116.1 mRNA downstream 924 18559118 ~ 18565127 (-) False csnk2a1
XM_043261115.1 mRNA downstream 928 18558731 ~ 18565123 (-) True csnk2a1
XM_043261118.1 mRNA downstream 8196 18552637 ~ 18557855 (-) True zgc:194210
XM_043260629.1 mRNA downstream 45764 18492626 ~ 18520287 (-) True mroh1
XM_043260321.1 mRNA downstream 102725 18459745 ~ 18463326 (-) True scrt1b
XM_043260126.1 mRNA upstream 7254 18596956 ~ 18600264 (-) True ccn4b
XM_043260127.1 mRNA upstream 7254 18596956 ~ 18598977 (-) False ccn4b
XM_043261418.1 mRNA upstream 12108 18601810 ~ 18632915 (-) True tg
XM_043261385.1 mRNA upstream 43536 18633238 ~ 18643289 (-) True phf20l1
XM_043261559.1 mRNA upstream 64030 18653732 ~ 18662490 (-) True LOC122360727
XR_006252779.1 other downstream 45764 18492626 ~ 18520287 (-) False mroh1
XR_006252778.1 other downstream 45764 18492626 ~ 18520287 (-) False mroh1
XR_006252805.1 other downstream 199061 18357417 ~ 18366990 (-) False slc45a4b
unassigned_transcript_2159 other downstream 1575677 16990302 ~ 16990374 (-) True trnat-ugu_49
TU167506 other downstream 1883873 16680197 ~ 16682178 (-) False esrp1
TU168645 other upstream 59817 18649519 ~ 18650609 (-) True G114236
TU168660 other upstream 79979 18669681 ~ 18671245 (-) False LOC122360747
TU168665 other upstream 104210 18693912 ~ 18698316 (-) False LOC122360940
TU168666 other upstream 104210 18693912 ~ 18698316 (-) False LOC122360940
TU168710 other upstream 225514 18815216 ~ 18821088 (-) True rpz

Expression Profile