RNA id: XM_043261487.1


Basic Information

Item Value
RNA id XM_043261487.1
length 5432
RNA type mRNA
GC content 0.48
exon number 7
gene id znf628
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13556250 ~ 13564227 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTACTGAGAGGCGGTCACAGACGGGCGACTGCTGGTTAGTTTGTGCTCTAGATTATTGTTAAGGTTGTGTGGACTATCACTGCGGAGTTCGGCCTTATATCATTACATGAAAAACAGCTATTTGTCAGCAATTATCCAGGGGGATAACACATGCATATAATAATGCACTTATTCCGACAAATATTGTGACGCTTGAGGAACGAAGACAAGGCTGGGATGGATCCGAGAAGGCCGGCTCGAGACAGCGcaaataaatcaacaaacagGCGATAAAACGACTCACTGTCGATTTGTTTAGAAATTGAGTGCTCTACCGACGAATAAGGGAGACATTCTGCATCGGAAAATATTATCTGACTGAAATCTTCTAAGAACTTGCCCAATCTCTACTAAACACACGCCATGGCTGCCATAATTATAGCAAAACTACAAAACGACTGAGATTCCTTCACTACAGCCCAACTTTTTCACACCAGTTGTGATGGCTAACACTGTCGCTACTCTGGTGGTCCAGACCGAACTCTTACCTTCTCAGACACCCTCCGCCCTCTCTCCCTTTCCTTCCCTGCTCCCTTCCGTAGAGGATGGAGAAGAGGATGGAGAGAAGGGAGAAGAAGAGGACAAACAGTCAGGAACAGTTGGGCTCACAGGTGACATTGTGACATCATCAACACCCCCTGCAACGGTAGCTCAAAACCCAGAGCATCCATTCCAGTGTTTGGATTGTGGCAAGAGTTTTAAGTGGTCATCCAGATTGGCACATCATCAGAGAAGCCACAATAATGAGAGGCCATATCGCTGTAACCTTTGCCCTAAGGCCTTTAAGGGCTCATCTGCCCTTCTGTACCACCAGAGGTCTCATTCTGGAGAGAAGCCGTATAAGTGTGATGACTGTGGTAAAGCATTCAAACGCTCTTCTCTTCTGCAGATACATCGGAGTGTGCATACAGGCCTTCGTACTTTCCAGTGCTCCTACTGCCCTTTGACCTTCAAATGGAGTTCACACTACCAGTATCACCTCCGCCAGCATACCGGTGAATGTCCGTACCCATGTGACAGCTGCTCCAAAGCCTTCAAAAACTCAAGCAGCCTGCGTCGTCATAAGAATGTACACCTGGGCTTCAAGCCTTACGTCTGTGACGTCTGCAATAAAGCCTTCAGTCAGTCCACTAATTTGCGTCAGCACATGCGCATACACACAGGCGAACGCCCTTATGTCTGTGGGGACTGTGGGCGCAGCTTCACACATTCATCCAACTTGGCGCTGCATCGCATCTCTCACATAGAAGGAAAGGGAAGAAGTGCTGGGAAGGTTGGAGGGGCTGATTCAGGGTCAGCAGCTCGAGAGATGGAGGTGGTGTTGACAGAGGACTTGAACACTGTTGGGATGAGTATTTCTGAAATGGTAGGGCTCGTTGGTGGACAGGAGGGAGGGGTTGGACAGGTGTTCCTGTCTCACAATACGTCCTCGCCTGCTACCTCAGgtacagccaatcagaacatcCTACCACAGCTGACGCTCACACCCACTTCCTCCACTGTCACAGGCTCAGAGCATATCCACATGAGCAAGAATGACACAGGTGCTAGTGTCTTGCTGTTTAGCTGTGGCAGTTGTAATGAGACCTTTTCAACACAGAGTCACCTTGAGGAGCATCAAACTCTGCATCTAGATAGCCTTGGCCCAGCAGGTGGTGGAGGGCTTGCTACAGAAAATAGCACAGGGGTTGATGGAGGTGGAGTGTCACTGGTGGGGGCTACACCATTGTTGGCAGACTTTGAAGAGGTTGTTGAAACCACCACAGTTGCAGATAGTGGGCAGGCGGCTGAGTTACTTGGTCTGGATGCCGTTAGAAATGAGTCTGGGCAGGCACAGTATGATCTTCTGCAGACCTTTACTGCATCTGTGAATCAGATGCCCACTGCACAAGCTACAACAGAATGCGTCTactgtgggaagagtttcaaaACCAGCAATGGACTGACCAGACATGTGGCTCAGGCCCATCCTCTTGCTCTATCCGAGTCGCGTTCTCAGTTCAACTGCTCGGCCTGTGACCGCTCCTTCCCTCTGCTCTCCTCTCTGCTCAACCACCAGCACTCTCACACTCCTGAGCAGAGGCTGCTTGCTGAGGCAGAGGCAGAAGCAGAGATCGTCTGCCCCTCTCTCTCACTGCCCCTACCCTCCttaaagagagatggagaagatgGAGAGAGGGAGATCCATGTCAGTCTAATTGCTGTTACtgaggagggagagagacgAACTGTAAAGCCATCTGCCAAAGCATCAGGAAAAGGAGCTAGGAGAGGTGGAAGCAGCAAGACGTCTGCAACAAATAACGAGAGGCCATATCGATGCTCTGAATGTGGGAAGTCATTCAAAGGTTCATCAGGACTTAGGTACCACATGAGAGACCACACTGGGGAGAGACCGTATCGATGCACAGAGTGTGGCAAAAGCTTCAAAAGGTCCTCACTGCTCTCCATACACCAAAGGGTCCACACAGGTGTGCGGGCTTTTCAGTGCCCCTACTGTCCACTGACCTTTAAGTGGAGCTCACACTATCAGTACCATCTTCGCCAGCACACCGGTGAGCGGCCATATGTATGTCAGGAATGTGGCAAGTCTTTCAAGAACACCAGCTGTCTCCGTCGCCACAGTCAGCTCCATTCTGGCCTACGTCCACACGCTTGCTCTGTGTGCGGTAAGGCTTTCTCTCAGACCTCCAACCTCAAACAGCACGAACGGACACACTCTGGAGAAAGGCCCTTTCAGTGCTCCCAGTGCCACAAGAGCTTCACCCACTCATCCAATCTGCAGCTGCACCTACGCACGCACTCCTCACGCAAGGACTTCAAGTGCCAACACTGCGGAAAAGAGTTTGTCATGCTCTCCTACCTGCAGAGGCATTTGAGAACTCACAGTTCTGGGGGTGCAGTGGCGTGTACGAAGGAAGGAGGAAAGGTGGCTAAAGGTAGTGGTGCTTCAGAGACAGCAACGCTAAATTTAAACTTGAATGTACCTGGAGGGCTTACCTCCTTGTTTCCCACAGATGGCAATTCCACATTGATTCTTTCACCCCCAAATCTTGACATACCCCCAAACACATCCCAGAATTATTTTATGATCCAGACAACTTCAGGGTTGCAACTGATCCCATTATCCAATCCCACGCCAACACagcctctccctctccctcctcctccacccCCTCCTCCCCCACCACCTCCACAGACACAGAATTTCCTGCTTCTTCAGTGCCAGTCCAATAATGGAAACCAGCCTAGTCTTATCCTGGTTCCCACAGCGTCCAGTACAAACACTCTTCCCACCTCTTCAGAACCACAGACCCTCCCCTTGGTGCAGACCATTCCGGCAATGCCCCAAGTTCTGGCAGCACCCCAAACTCAAATCCAGCAATTTCAACCTGTTCAGACACAGCAGagatttattttaactaataataatgctCCCCTCATTACTGCCCAGCCTCAAAGCACATCGACGGTTACCCGTCCCATTTTAGGCAGCCTCGGCCGTAGTCGGAAAGGAGGAACCAGGCGTGGACGGAAGCCTAAAGCTGCTACCCAAAAATCCCCCACTACAGTTCAGACCACACCAGTTAAGCAAGCGTTAATGCTATCAGCTGCAACTTCCACATCTACCACAATATCCAGTGCCACTTCTGCTGCTTCTTCAAAGACGGTGTTCCCAAGGCTTAATGCTCATGATCCTCCTACTGTGTCACCTGTCAGCACTAGCCAAGTACCTGGAAGCTCTTCGGCTCCTGTAGTTAGCATTATGTCATTGATGCCAAACTCCACACTAACAAACAGTTCCTCAATGTTGAGCAGTGATCCTGAGAGTGTACCAGTCGAAGAAAAAGCTGTCGAAGAAATCTCAAGGGAGCACTTTGTTCTGTGcctgaagaaagaaatagagAATGGAGCACAGGGCGATGGGATGGAGGTAAAGGTGGAGATGGAGGGAGGGAACGATGCAAGGCAGTCTTATGTATTACAGATTGAAGGTGAGGGCCAGCAAGAAGAGGAAGGGAATAGTGAGGGAGGAGAGAAGTCATATGTGCTCCGATTTCAGACAGAGGGAGAATGTGAAGGAGATGcaggaaaagagaaaacagaaatggtCTCTCTTAACTTACTCCAAGAGTGGACTGGGCAGAGTGAAGGGCATGGAACTGCAGATGCTGAGGGCAGAGTTGAAGTAGAAAAGTCCTTTGTGCTTCATTTCCAAACAGAGCCTCAGAGTGAGGAGGACATTCAGCCAAACTCAGGCTTCATAGGAGGCCCAGGTGAGGATCTCGGCCTTTCTTGCCATCCGGGACAAGCCTTGGTGCCTCTGGAAGGACAGGATGTGGTATTTGAGCTTGGTGATGAGACAAAAATAGATGGAAGCACAGGACCAGGGGACAGTGTTCAAATGATTGCACTAATAGAAGGTGAGGGCAATGGTTCTGAGTCAAGAGGCAGTTTTAAAGGTGCTGTTGGGGCGAACTCTGGGCAAATGGAGGGAATCTTTCAGTTGGAGGGGGGAGAAGGCATTGTTATAATTGAAGTTAGCACCAGCAGTTTGAGAGAGGGTGGAATAGAGGCAGCTGATGTAGGACATACTTTAGCCCAAGGAACTGAGGAAAGACAAGCTAATGATGCACAAGAGGAGGTAATGTCAGATGAGTCAAAACTTGTTGATGCTGAGAGCATATCATCGTCAGAGATGGGACTGATTGGAACTTAGGGTTAAGTATGGGGAACTCTAATAGTTAATCTGACTGGCTTTAACACAAATCGCACCTCATGACAtgtttcaaatgcaaaatggcacttttttttaccacatATTCAGACTGAATTAATTTCAAGTAATGGTTCTCTTATTCTAAAGTGTTCCTTTTGGACtgttattactgtttttcttaGAGATTTGGAAGCTGACAACACCATTGTAGCTATAGGACCAACACAGGACCTATGTTGAGTCTCACATAAATCATTAGAGACCTGTTTGCTCCACACATAGACATCCTTAGAACACCACAGTGTCTTCTCCCTAAGCTGTTGCCCCCACCCCCATGACTGTACTTTGTGGGGATAAAGCATATTGCTTGTAGTTACAGTTGTTCACCTGGCCCCTACGGGGAGCTATTTCACAAACCACAATCATTTGAATACAGCCCAGCCAAAAAGCCTGGTTTCTAAATGAAGGAAGTCCCTGGTGCTCTTTCACATCCAGGGTGCACTGAAAAGAGAATTTATAAactaatatgaaatatgaactaTATTCAGCTATGCTGTCATGTTGACAGTGACTGTACAAAGTGAACTTTTGTAAATATGTCTACTGTTTGATTTCATTCTTAATATTGGTACTAGATGACAATTACCAATAAAATAGATATGAAtgtctgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165828 lncRNA downstream 12939 13534721 ~ 13543311 (-) True G112350
TU165793 lncRNA downstream 84564 13449507 ~ 13471686 (-) True G112327
TU165807 lncRNA downstream 94525 13455557 ~ 13461725 (-) True G112339
TU165802 lncRNA downstream 109072 13440670 ~ 13447178 (-) True G112336
TU165763 lncRNA downstream 121955 13431144 ~ 13434295 (-) True G112315
TU165843 lncRNA upstream 42404 13606631 ~ 13609334 (-) True G112361
TU165864 lncRNA upstream 54460 13618687 ~ 13619336 (-) True G112377
TU165875 lncRNA upstream 84400 13648627 ~ 13736231 (-) True G112385
TU165880 lncRNA upstream 94778 13659005 ~ 13659470 (-) True G112390
TU165849 lncRNA upstream 124279 13688506 ~ 13689091 (-) False G112363
XM_043261974.1 mRNA downstream 287 13552540 ~ 13555963 (-) True nat14
XM_043261975.1 mRNA downstream 7938 13546280 ~ 13548312 (-) True aicda
XM_043261305.1 mRNA downstream 39748 13506631 ~ 13516502 (-) False epn1a
XM_043261306.1 mRNA downstream 39749 13506631 ~ 13516501 (-) False epn1a
XM_043261304.1 mRNA downstream 39749 13506631 ~ 13516501 (-) True epn1a
XM_043261927.1 mRNA upstream 1175 13565402 ~ 13573595 (-) True il11a
XM_043261420.1 mRNA upstream 27805 13592032 ~ 13604741 (-) True rasip1
XM_043260976.1 mRNA upstream 109529 13673756 ~ 13678258 (-) False si:dkey-26c10.5
XM_043260975.1 mRNA upstream 109529 13673756 ~ 13678257 (-) False si:dkey-26c10.5
XM_043260977.1 mRNA upstream 109529 13673756 ~ 13676975 (-) True si:dkey-26c10.5
TU164609 other downstream 2144473 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 2269818 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 2673039 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 2689822 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 2807950 10746793 ~ 10748300 (-) False LOC122361037
TU165859 other upstream 89833 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 670327 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 1345098 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 1904253 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 1904253 15468480 ~ 15496375 (-) False rps19

Expression Profile