RNA id: XM_043261491.1


Basic Information

Item Value
RNA id XM_043261491.1
length 3848
RNA type mRNA
GC content 0.47
exon number 7
gene id gata6
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 7977629 ~ 7984289 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCCGGAGCCCAGAGGCGCCTCCTCTCTTAAACATCGTCACGAGTGAACGGAGAACTTTCATTCCTAAAAGTTCTCCAAGTCCTGCAAGCACATAACCGCGGGATCCTGCGAACACCGACTTATGGCAATCAACCAATAGCGCGCTCCGCCTTTGTGTTTTCCACATACTGTGAGAAATAAAAGGGATCCTGGATGGACCTGGGCGATAACGGCTGGTCCATGGTCAAGCGCGAAGTGTCCAGCAGCAGCCCGGGGTCTCCGGCCGAGCAGAGCTACCTGAACGCTGACCGCAGGGACCGGCTGAGGTCGCCGGCGCCGACGCACCTGGACGCGGTGGGAACGCGTCGCGCCGAGGGCAGGCCCCTACACTCCTACGTCCACTTCGGGCATCCCAACAACGCCCTGCCCAATTCTGACGACGTTACACTATTCACGGATTTAGACCAGGGCAACAAACTCATCATCTCAGGCGGGCACGCCAGGGAGACGCATAAAGGAGGCTTAATTGTGGACCCTACCGACATGTATCAGACCCTGGCCATCGCCGCGGCTCAGAGTCAGGCCGGTTATAACGACGCGCCGTCGGCCGGTTACATGCACTCCAACCCCAATTCTCCCGTTTATGTGCCGACGTCTCGCGTTGGAACGATGATACCGAGTTTATCGTACCTGCAACCCAGCGTGTCGTCGCAGCCGAGCCACGCGGTGAGCAGTCATTCGGTGTGGTCACAGTCCGCCCCGGAGAGCCCGTCCTACAGCACTGGAAGCCCGCACACCTCCAACCGTTTCCACTACTCCCCCAGCCCGCCTATGAATAACGGCACATCGAGGGATGCCAGCTATACTAATCCCCTGAATGTAAACGGTCGAGACCAGTACCTTTCCCGGCCGATAAGTGGATCTTACACAAGCCCGTATCCTCCGTACGTTGCGCCGCAGCTATCACAGTTACCGGCGGCGTGGCCCGCGGGGCCCTTCGAGAACTCCATGCTGCACTCCCTGCAGTCCAGAAGCGCGCCGCTGTCCATCAGGGGACCGAACGGAGATCTGCTGGAGGACATGGTGGAGAGCCGCGAGTGCGTCAACTGCGGCTCCATTTCCACCCCGCTGTGGAGACGCGACGGCACGGGCCACTTTCTCTGTAACGCCTGCGGTCTGTACAGCAAAATGAATGGACTCAGCCGACCATTAATTAAACCCCAGAAGCGCATGTCGTCTTCAAGGCGCATTGGCCTGTCGTGCGCGAACTGCCAGACCAGCACTACAACACTGTGGCGCAGGAACGCGGACGGAGAACCTGTGTGCAACGCGTGCGGACTCTACACAAAACTACACGGGGTGCCCAGGCCCCTTGCCATGAAGAAAGAAGGTATCCAGACAAggaaaagaaaaccaaaaacctTGAACAAAACAAAGGGATCGTCTGGAAGCAGTTCTGTCCCCATGACTCCAACTTCTTCATCATCTTCTAATTCTGAGGAGTGCACAAAGAACAGTCCTTCATCAACGCAGGTCAACTCTTCGGCGCTGGTGGGCCAGGTGGACGTTCCGGGCACGACGGGCTCCATGGTGAAATACCCCGGCCAGGAGAGTCTGTACACGAATGTAGGCCTGACGTCCACAGCTGACGTGGCGACCTCCGTGAGAGGGGACACTTGGTGCCCCTTGGCCTTGGCCTAAACCCTGGCACCACGGGCTGGGAGCCATTTGCTGTCCTTCAGCTCTCCAGAACGTCCCCTTAAAATCCGGCAGGGTGCGGGGTGTCATCTGTTTTCGGCCTGTGTCGCTGATCTCGAGCAGAGGCTTCATCCGTTCCAAATACtccagtttttctttttacccGTGGAATACCGGACATCCACGATGGGAGATTATCTTTGCTACTCTGCACTAGAGGACGACACTTAAAAAGCGTCTGCTTGGTACTTTCAGAGCGCACCCTGCACCGCGAATGTTTGCTCGGACGAGTAAGTGgatcaaaaattatttgttttgaaagtaaAGTTGTACATATTAATGCTAACGGATACTTGGCCCACCTGGAAAGACGAGGTTGTTGATTGGATTGTGGTGATCTGAAGGGAAAACGGTTGATCTGTCTGAAACTGGAATTGAAGATAAAGTGTCAAGGTGTTCTTACCGATGAATGCGAACATATTTATGAAGCTATGGTTGTtcaaataatgcatatatttgtcAATAAAGATAATGTCAAATAGAGTAGGACTGAAGCCTTGCCTTTCCTTTGATATCTTTTGTTTTTCGAGCTTGATGCTGTTGCAGTGGATGTTGCTCACTAATCTGCACACCTTCTATGTGAAACTTAAAagaaaacgagaaaaaaaaaagctcttagaAGACTGTTTTGTGATGGTTTAACACAGGGTATCAAAGGAGCTCACGCGAGACTTGTAGCGTTTTGTTCGATTACGCATTTTCCTAGAGATCACTATCAAATGAAAACGGTCTAATCAAAgttcatagtaaaaaaaaaaaaaatgtgtttcgaACCTATGTGGAGAAATCCAGCTGGAGTAAATCATCAGCGAAGCATAAGTTAGAACAAACGGCACTCAGGATTTCGTttctgatacattttttttgttacaatacaatctcagaaataaaggtacaaaagctgagGCTgtacttttgtacctattaggttcaaaatGGACCTTTTAGGTGCAAACCTtgcttttgaaaaggtaccgccccggtgacagcttttgtacctttatatCTGAGAGTgtacaaaactgcaaaaaaaaaaagttttgctgcAATGATTTTAGATGTAATACTACCTAACGTATGACATTGATGTGTGAGTATCAGTGCATATtgctgtttgttattgtttttttttttttactttcatcgTGATACAACTCTGTGGTCGCTATACTTTAACTGATGAAGGGACAATGTCAAATCTGCATCTCGCTTTCACGATTTGTTGAATGTTTTAGAGAAAGTGTTGTGTGCCAGAATCAATCAGCAGTGAAAGTTTCTTGTGAGTTACCATCTAAATCGCAAACGGTAATTAATGAGCTATCTAAAGAGTTTAATTCGCTGATGAAAGAGTCAGTCTCGAGTGGTTTTGGTGTCCGTGATTTATTGCCTCTGATCTGTTAAACAGTTACCCAACTACAAGTTTCCCATGTAAACATCTTATGGCTTTGAAACTGGGGATTAAACGAGCACCAGAAGAGCCTTCTTCAAATGATTACTCCTTAGAGCAGCCATTCAGTGACGTTTTTGGACAAGCTTTTCGTGTCCTAGAGACAACGTGTGAACAACGCAAGAAACGTTTTGCTATCATTGTGATTCTCCACCCTTGTAACCtctacaattatttatttctgcaatgTAGTGTGTTTGGTattcgtttattttatttgaattaacgTATTTGTATTTTCCGGATGTTTTTGATGGGCGTAATTTCAGTTCCAAATTATTTTGATCGCCGCCGCCTGGGTTAAACAGATTCATTTGTTATGGTTTTATCTGGAAATCGTTCAAATTACATGTTGAATTGCAAAGTgtgttttccttcttttttgtagattttaagGTTCCGACATTACATTTCTTACGAAAGGTTCTTCGTACTCGTCCTGACTGGAACCACATCATTTGTACTTATGATAATTTAGTCAAAATTAAGACAATCATAAAGCCGATTTTGATGgtaaaaatgttcttaaacCATTGACTCTCCCTGTTGTTTTCCAGTGAACGGAGTATTAAAAAGGATGtcattgtacttttttaaatttttattttttatttcaaattcaattcaataaCACTGGAGCAATAAATAAGAGCCATGTCTAAA

Function

GO:

id name namespace
GO:0030099 myeloid cell differentiation biological_process
GO:0048565 digestive tract development biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0001889 liver development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006252846.1 lncRNA downstream 17254 7958881 ~ 7960375 (-) True LOC122360975
TU163265 lncRNA downstream 17591 7959291 ~ 7960038 (-) False LOC122360975
TU163199 lncRNA downstream 73036 7849679 ~ 7904593 (-) True G110449
TU163204 lncRNA downstream 76621 7883932 ~ 7901008 (-) True G110452
TU163206 lncRNA downstream 88334 7887795 ~ 7889295 (-) True G110453
XR_006252839.1 lncRNA upstream 4661 7988950 ~ 7992867 (-) True LOC122360778
TU163295 lncRNA upstream 98611 8082900 ~ 8083300 (-) False mkxb
TU163299 lncRNA upstream 99080 8083369 ~ 8083825 (-) False mkxb
TU163329 lncRNA upstream 250619 8234908 ~ 8235793 (-) True G110546
TU163331 lncRNA upstream 253469 8237758 ~ 8239176 (-) True G110548
XM_043260903.1 mRNA downstream 26544 7928529 ~ 7951085 (-) False cables1
XM_043260901.1 mRNA downstream 26545 7928529 ~ 7951084 (-) True cables1
XM_043261494.1 mRNA downstream 146879 7828215 ~ 7830750 (-) True LOC122360680
XM_043261055.1 mRNA downstream 359033 7441898 ~ 7618596 (-) True cdkal1
XM_043260642.1 mRNA downstream 585311 7388716 ~ 7392318 (-) True sox4b
XM_043260655.1 mRNA upstream 21429 8005718 ~ 8053185 (-) False mib1
XM_043260652.1 mRNA upstream 21429 8005718 ~ 8053185 (-) False mib1
XM_043260656.1 mRNA upstream 21429 8005718 ~ 8053185 (-) False mib1
XM_043260654.1 mRNA upstream 21429 8005718 ~ 8053185 (-) False mib1
XM_043260651.1 mRNA upstream 21429 8005718 ~ 8053185 (-) False mib1
TU163187 other downstream 146912 7828820 ~ 7830717 (-) False LOC122360680
TU163145 other downstream 359044 7610629 ~ 7618585 (-) False cdkal1
TU163147 other downstream 359044 7610834 ~ 7618585 (-) False cdkal1
TU163032 other downstream 776248 7195490 ~ 7201381 (-) True LOC122360222
TU163014 other downstream 894105 7081962 ~ 7083524 (-) True G110303
TU163302 other upstream 106362 8090651 ~ 8092353 (-) False mkxb
TU163327 other upstream 231740 8216029 ~ 8216595 (-) True G110544
TU163340 other upstream 314500 8298789 ~ 8302245 (-) True G110554
TU163343 other upstream 327976 8312265 ~ 8316685 (-) True G110556
TU163623 other upstream 649061 8633350 ~ 8636222 (-) True wu:fj39g12

Expression Profile