RNA id: XM_043261514.1


Basic Information

Item Value
RNA id XM_043261514.1
length 1918
RNA type mRNA
GC content 0.41
exon number 4
gene id lim2.5
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 25731193 ~ 25733582 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGCAATGATCATATATCCTCATCATCTCATTGTCTCTCCTGTGCTGTTTTGCATGAGTTTGTTGTCCAGCTCTGTAGTTTTGTGGCGTTGCGGgttaagcattttatttataattacatggtaaatgGTGTTTGGTGCTTTCTGTGAAGCAATGATGTCATTTTCCGCTATATGACTAAGCGTTCCTGTTTTGCTCGTGTGGACTGTAAAAACACAGGAAATTGCAAAAGCATGCACGACCGGTTTTGTGAGAAATTAAACATGCATcgtaacacaatttaagatattttggatgaaaaccgtgaggcttgtgactgtcccattgactaaattacactgtcaaggtttagaaaagtatgaaagagtATTCTAATTATGTTTTCTGGAAAGCATTTACCTGGCAGTCAGTCTTCCAGCTTTCATCTCAAAATttatcagtgtttatttttctccGGTCATAGAGATTTTTCCGCCTGTTCATTAAGTTGGCAATGCGAGGATTCACgcagaccaaaacaaaaatggatGCTGCGACACAGAACACAGAAGTGCatttccaccactgaataaaaatgttaacaaacattCAAAACCGCAAGGTACAAAGTCGCATATCTAAGATATAAGGTCAGAAATGCTATAAAATCTTGCAGTTGTGACTCagaattgcgagtttatatcttaTATGTTGAGAAcatattagtcttttttttttccccatcagaATTGTGCTTTGTAACCCGCAAATGCACGGTTCTGATCATTTGtgtataaaaaatctaaattgccAGTTTGTATTACACAGTTTGCGagaagaaaagtcagaattgcacaTTTGCGTTACACAATTGCAAGAAAGTCAGTTTTGTGAGGCAAAAACTAAATTATCTCGAAacttatttttatgcttaagcACCTTTAACATCCACTGAAGCTTTCCATTTcacaaaagtggaaaaaaaaattcttctttataaaaaaaagttattttaagaaTGATTCATTGAAAGATTGTTTAGGCAGCCGAACGTGGCTCTTTTAAGAGTGAAGGGTATGTTCTTGACCTGTATCTGTTGTACATGAtgagcatctgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtctgtATAGTGCGTTTAGCTCCTCAGGATGTACAGCTTTATGGGAGGGGGCTTATTCTGTGCCATCGTGGGCAACATCCTGCTGGTGGTCTCCACGGCGACGGACTACTGGATGCAGTACAGACTGTCCGGCAGCTTTGCTCACCAGGGCCTGTGGAGATACTGCATGTCTGGCAAATGCTACACGCAGACTGACAGCATTGcTTACTGGAATGCGACCCGGGCTTTCATGATCCTCTCAGCGATGTCGTGTTTTGCGGGAATCATCGCAGGCATCCTGTCCTTCGCTCACTTTTCTGCCTTTGAGCGATTCAGCCGTTCCTTCGCTGCAGGGATCATGTTTTTCATCTCCACGCTCTTTGTTCTGCTCGCCATGGCCATCTACACCGGGGTGACGGTCAACTTCCTCGGGAAGCGTTTCGGGGACTGGCGTTTCTCGTGGTCTTACATTCTGGGCTGGGTTGCTTTGCTCATGACCTTTTTTGCAGgtATATTTTACATGTGTGCCTACAGGATGCACGAATGCCGCCGAGTGGCCGGTTCTCGCTAAAATGCAAGAGCATGTTTTCCAGAAACCCATACAAACACTCAAGTGTCTAAACATGTATATACAGGTTTTTGTACCAGCGTAAGTTGGCAGAAAGATAAAATACACCACATTCTGATTCTGTAAGACTTCTTTAGTCTCTATCCAAACAGATGCACATTTAAGATGAAATATGAATCGCACGATCCTAAATGAATCTGAATCATTGTTCATGCACAGAGAAgcaaaatttcaaataaaatctcA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
K24190 LIM2; lens fiber membrane intrinsic protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171627 lncRNA downstream 20507 25708114 ~ 25710686 (-) False LOC122361130
TU171631 lncRNA downstream 24397 25704700 ~ 25706796 (-) True G116247
XR_006252861.1 lncRNA downstream 28659 25668360 ~ 25702534 (-) False LOC122361130
TU171683 lncRNA upstream 43154 25776736 ~ 25778404 (-) True G116282
TU171682 lncRNA upstream 44250 25777832 ~ 25778404 (-) False G116282
TU171795 lncRNA upstream 286943 26020525 ~ 26073006 (-) True G116351
TU171793 lncRNA upstream 328709 26062291 ~ 26069534 (-) True G116350
TU171803 lncRNA upstream 337578 26071160 ~ 26128626 (-) True G116359
XM_043262091.1 mRNA downstream 2528 25712911 ~ 25728665 (-) False nek10
XM_043262090.1 mRNA downstream 2528 25712911 ~ 25728665 (-) True nek10
XM_043260186.1 mRNA downstream 104094 25568531 ~ 25627099 (-) False znf385d
XM_043260187.1 mRNA downstream 104095 25568531 ~ 25627098 (-) False znf385d
XM_043260185.1 mRNA downstream 104096 25568531 ~ 25627097 (-) True znf385d
XM_043260290.1 mRNA upstream 1941 25735523 ~ 25745044 (-) False vsig10l
XM_043260289.1 mRNA upstream 1942 25735524 ~ 25745044 (-) True vsig10l
XM_043261884.1 mRNA upstream 12983 25746565 ~ 25752100 (-) True etfb
XM_043260361.1 mRNA upstream 351192 26084774 ~ 26088904 (-) True LOC122360054
XM_043260356.1 mRNA upstream 357796 26091378 ~ 26103408 (-) True si:ch73-90p23.1
TU171647 other downstream 54783 25667819 ~ 25676410 (-) False LOC122361130
TU171232 other downstream 1403220 24326707 ~ 24327973 (-) False phactr4b
TU171098 other downstream 2055895 23669898 ~ 23675298 (-) False mchr2a
XR_006252802.1 other downstream 2121352 23588185 ~ 23609841 (-) False usp45
TU171080 other downstream 2206811 23519808 ~ 23524382 (-) True G115882
TU172219 other upstream 646090 26379672 ~ 26384187 (-) True G116604
TU172308 other upstream 1073538 26807120 ~ 26809146 (-) True G116654
TU172257 other upstream 1076735 26810317 ~ 26812909 (-) False G116632
TU172261 other upstream 1076735 26810317 ~ 26812909 (-) False G116632
TU172263 other upstream 1076735 26810317 ~ 26812974 (-) False G116632

Expression Profile