RNA id: XM_043261589.1



Basic Information


Item Value
RNA id XM_043261589.1
length 1313
RNA type mRNA
GC content 0.48
exon number 3
gene id ccdc127a
representative True

Chromosome Information


Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 20036348 ~ 20039187 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


gCCCAACTCCCCTATTAAATAGTAAATTGACCGCTGGATGTTTTTAATGGAATTGCACGTTCAAGCTGCCTGGAAGATCTCCTGCAAAAGACTTTATATTGTTCAAGGGTTTCTCCATGAACAACCTGAACGATCCTCCTCGATGGAACATTAGACCGGAGGCCGCTGGAGGAGAAGACGGGGGCAGATGGAACTACGCGCTGCTGGTGCCCATGATCGGGCTCGCGGCGTTTCGTTGGATATGGACTCGAGAATCACAGAGCCAGATCCAAGATGTGAAGAGCAAGTACGACAGGGATATGGCAGCCATTACCAGAGACCTGGAGCTGAAGTACAGGGAGACGCTGACGGAAAACCGGCGGACAGCAGCACACCTGGAGGTGGAGCTTGAGAAGGAGCGCCAACGTGTGCAGGGCTACAAGAAAGCCCTGATCTCTCAGAGTCAGCAGCTCATGGAGGAACGGAAGCAGCTTCATCAGGAACGGCAGGATCTGGAGGAAGAGAAGACCCGTCTGCTGCGGTCTGGAGTGGCCGAGGCGGTGCTGAGGAAAGCCCTGCAGCGAGAGGAGGACTGGCGTCGCAGGGCTCAGGCTCTGCTGCAGGAACTGGAGGTGAAGCTGGTGGAGAGGCAGGAAGCTTTCTGCAGCATCCTGTTGCCACGAGAACATCGTCTGGAGATGGAGAAGAACCTGCTGCTAAAGGTGGCTAAAGACCCGGCGGGTGCCGAGCTGAACCTAGAGGAAGATCTCAGGGACATTTTTAAGAATGACAGACACTGTGCAGATTTGCTGAACATGGATAAGCGTAAGAATGGGAGTTTGATGTGGCTGTACCTCAGGTACTGGCAGCTCCAGGTCACCCTGCAGAAACACAAGAGGGCAGAAGAGGCTCTGAAAGGGGCCTCGCCAAACTCCAGCAGACCTTCAGGAGTGTAGATctctatttaaaacaataagtaTTTTCTTCCTTAAATGTTGTCCTTTGCTTATCCAAGGTATCCCTGTTATTTACTTGTCAGCTATTTATGATGCCAAATGTTCTTGTGAAACCACTTGAGCCTTGAGTCTTCGACAATCATATCAGAACATAAGAGTGTATATTTTGTTGGGCAGATTCCGGTTTTCGTTTTCTTGGATTAAGCAGAAAGCAGATAAATCaaattcttttttatatttgctgcaTTACTAATAAGCTTTATtggacaatttatttattttcactctaAAGATGGTTCATAACTAATATGTACcacagaaagtaaaaataaggTTGGACATGTGTAATAAATACGTTTTCTGACAACAAAGAATATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU169218 lncRNA downstream 64391 19959867 ~ 19971957 (-) True G114626
TU169197 lncRNA downstream 316412 19719186 ~ 19719936 (-) True G114611
TU169194 lncRNA downstream 342955 19693138 ~ 19693393 (-) True G114608
TU169193 lncRNA downstream 352418 19683622 ~ 19683930 (-) True G114607
TU169067 lncRNA downstream 392858 19640914 ~ 19643490 (-) True G114539
TU169265 lncRNA upstream 61857 20101044 ~ 20104270 (-) True G114663
TU169371 lncRNA upstream 127608 20166795 ~ 20177758 (-) True G114715
TU169376 lncRNA upstream 134976 20174163 ~ 20244153 (-) True G114718
TU169402 lncRNA upstream 176916 20216103 ~ 20217581 (-) True G114741
TU169418 lncRNA upstream 205834 20245021 ~ 20245239 (-) True G114747
XM_043261878.1 mRNA downstream 9343 20022244 ~ 20027005 (-) True rnf144b
XM_043261812.1 mRNA downstream 16116 20011295 ~ 20020232 (-) True sqlea
XM_043260110.1 mRNA downstream 149685 19865726 ~ 19886663 (-) True si:dkey-122a22.2
XM_043261243.1 mRNA downstream 378624 19647572 ~ 19657724 (-) False dpys
XM_043261242.1 mRNA downstream 378625 19647572 ~ 19657723 (-) True dpys
XM_043261591.1 mRNA upstream 760 20039947 ~ 20041361 (-) True mrpl32
XM_043260790.1 mRNA upstream 37620 20076807 ~ 20127963 (-) True adam22
XM_043260791.1 mRNA upstream 37620 20076807 ~ 20127960 (-) False adam22
XM_043261109.1 mRNA upstream 89856 20129043 ~ 20133941 (-) True dbf4
XM_043261110.1 mRNA upstream 100225 20139412 ~ 20154648 (-) True rundc3b
XR_006252818.1 other downstream 615254 19416962 ~ 19421094 (-) False cd22
TU168710 other downstream 1215260 18815216 ~ 18821088 (-) True rpz
TU168714 other downstream 1215260 18815216 ~ 18821088 (-) False rpz
TU168715 other downstream 1215260 18815216 ~ 18821088 (-) False rpz
TU168666 other downstream 1338032 18693912 ~ 18698316 (-) False LOC122360940
TU169372 other upstream 127608 20166795 ~ 20167614 (-) False G114715
TU169487 other upstream 402778 20441965 ~ 20452450 (-) False G114793
TU169489 other upstream 402778 20441965 ~ 20452450 (-) True G114793
TU169673 other upstream 612790 20651977 ~ 20653574 (-) True G114901
TU169801 other upstream 973420 21012607 ~ 21017105 (-) True G115003

Expression Profile