RNA id: XM_043261603.1


Basic Information

Item Value
RNA id XM_043261603.1
length 2677
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC122360758
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 14325658 ~ 14329605 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTTTTGCCTGCAAAAAAATGGCATGCTGTAGTGTTGATGCTGGGGAATGCTGACACGCAGGTAGTCATTAAGGcgtgtgagaggtgtgtgtaCTGGTTTGTGTGCATTATAGCAATACTAAGACGAGGTGTAGTCAGAAAGTGTGATTTAGAAAGGGAGGGATGGatgaaagagagtgagagagcgaAAGGGGGAGGGATGAAGAAGGTGAGATTGTGCCTAGGCTCATTCTGCATAgccgaggagagagagagagtgtgtagcAGGAACTTGTTTTGTGTAGCTGCTAGTTCAGCACTGTTAGCTGCAGTCTCTGCTTCGTTCGTACTGAGGGTTTCGGCCATGCTGTCCGCTCTGCCCAGACTCGCTGTGTTCATCTCTGCAGTGCTGGTTAACGGTGGTGTAGTCCGGGCAAGTACACACACGGATCTTGATCCAGGGTTCCTCCAGTGTCAAGAGTGTTTTTACAGAGGCGCACCTCCACACTCGCTGTCTGAGCTGGGTTTGGAGCAGAGGTGTCACACACATCTGACCGGACGGCCTTTTGCATCGCTCTATAATGCCAACTGCAAAAGCACCATCTATACAGCCCTTCACCTCGGCTTGAATAATGGATGGGGCAGAGGAGAGCAGAGCACGGATACCAAAGAACAGATCGATGACGATTCCCCTGTGGCCATCCCAGCTCTTTACAGAGGAGCCGCCGATGAGACCCCCTCACCCCATCACAACTACCCTCTCTTTAAATGGGATGCTTTGACAGCAGAGTTTATACAGAGCTCCATCATACCAAGGTGTTTGAAGACGAGCGGTGACATTTACATGCAGATTGGTTTAGGTGGTTTAAATGAGTGCAGGGGGAAGCTGTTGTGGTCAGCGGTGTGTTGTGCTGCATCAGATGGAGACGGCAGTTTCAGTGTTGGGCTGGTGAAGGAGGGGGACATGAAGGTGCTCAGCGTTAAGGCTTTGGAGGAGCTGATAGGAGTTACAGGCCTGTTTTCAGGAGGTTGTGGGGAAGTCGGAGATCAGAGCGAAGACGAACTTGCATCGCTCTTGAAAAAGCATCTGAACGGCAACTCTGATGTGCAAAGTGAAGAGCGCAGTGGCGAACACAACTCTCAGGACGCAGAAACATCAGAAACGGAGAAAGTGACTTCAGAGCACGTTAATGAGGAAGCCCAAAGCTACACGTCTTCTTCTCTGAGCTCAGACATGGAGTTTCAAGAGAACACCAATGAGACAGAGAGGTCAGAGTCTGTCCTCCTGAAAGTTTTGTCTTCCACCGTCTATCTCCTTTATGCTCCTTTTTCTCCAATCGTAAACAGAGTCACTAACCTTCCCTTCCAGCTAACCTACGTTCTTCAGGAAGATCTGGCAGTTCTGGCCTCGGTGCCTGGTGACAGCTGCACTTTGGTCAACAACTTGGTCTCAGGAGTATATTCTGGCATTTCATGCGTCTTGAACACCTTGTACCAGACAGGAGAAACAAGCGTGTGCACGACTTACGCCTGCCTCAGTCTGTTAGCCGAAAGCCTGTTTGTGGCTTTCCAGGAAGGATTCATAGGGACAGGCACTTTGGCATTGGATGTCCTGGGAATCATGACGGGAACAGTGGGGAATGGTTTTAGGATCATCAGGATGATTTTCGGGTCAGTTTTGGATCAGATGGTAGATTACCTGTGTGTCGTGTCTTCAGAAATGGGCTGCCAGGTGTCGACGGTGGGAAGTGGGGTTGGCAAGCTTACCTGGAGAAGTGGAAAGGGGGTGGGCCACATGCTTAGCATCGTAGCATCCGTCGTTGGCGGAGTAGTGGACAATACAATATCGAATATCCAGGAAGCTTTTGAGGGGAGCTCAGGGGAATCATCTGAATTGCAAACACCTGAATTGTTGAAATCTGAAGTGGTCGGTGAATAGACTTCAATGCGTGTGTATATGCCTGTGTTAGACACCTTATTTGCATATTACACCACACATAGATTGCATTAGTGCCTGTCCTTTTTCAGCGGCCTTGGCCCCAGGaagtatttttcctatttatttttcccataCAGAAGTCTTTGTTTTAAGCCATGAATAGCTGTAGGTAAATCCTAACATtacaaactttgatttgaaaaaaGCCCCGCAGTATTTGAAAAGGTGTAGGACTGTGCACTTAACATACATTGCTATTTTGAGCTATTTTCCAAATTATGTCATTCGCAGTGTTTCATGGAGGTGGACAGGAGGTCTATCTTATGATTTATGTTACTGTTAAAAATCAATTCTCTTATGGAGAAACTGAATGGGATTTTTACTTCCGCATCCTGACAGTGTCTGGCTTCACACCGAATATTAACCATATGGCATGTGGTTGTGAATCATCTGCcttaaaatacataaacctCCAAATTTTTGAAGGGTGATTTGTAACTCTTTCAAGGTGCTGAGAAATGTTTGTCAAGTGTCAGAAAGATGATGTAATTGTTGTGAACTGTTGGTCATTTCATCCGACATATAAAGACCTTGCTGTGTCATGGTTTATATGCTGCAATAAAACCTCTTCTCTGTGAGTCGTGCTCTCTGTCATTTATAGTCTAATCTATCACACAAGACCTTCTTCGAAGGAAATCCATGTAAATCCATTGAATAAGACTAGACTGCAAATAAAGAACAGAACATGGCTGTGCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166037 lncRNA downstream 22123 14303124 ~ 14303535 (-) True G112483
TU166033 lncRNA downstream 29086 14292739 ~ 14296572 (-) True G112479
TU166022 lncRNA downstream 114719 14210693 ~ 14210939 (-) True G112474
TU166021 lncRNA downstream 115125 14208396 ~ 14210533 (-) True G112473
TU166006 lncRNA downstream 215196 14110148 ~ 14110462 (-) True G112464
TU166305 lncRNA upstream 168921 14498526 ~ 14498744 (-) False dicp3.3
TU166339 lncRNA upstream 252874 14582479 ~ 14583312 (-) False LOC122359961
TU166340 lncRNA upstream 252874 14582479 ~ 14583312 (-) False LOC122359961
TU166341 lncRNA upstream 252874 14582479 ~ 14587869 (-) True LOC122359961
TU166328 lncRNA upstream 261757 14591362 ~ 14654150 (-) True G112659
XM_043261533.1 mRNA downstream 717 14313889 ~ 14324941 (-) True vars1
XM_043261789.1 mRNA downstream 35828 14220039 ~ 14289830 (-) False si:ch73-22o12.1
XM_043261788.1 mRNA downstream 35828 14253261 ~ 14289830 (-) True si:ch73-22o12.1
XM_043261522.1 mRNA downstream 117441 14187241 ~ 14208217 (-) True atp1a3b
XM_043259991.1 mRNA downstream 143887 14171168 ~ 14181771 (-) False dedd1
XM_043261608.1 mRNA upstream 142 14329747 ~ 14334066 (-) False ino80e
XM_043261604.1 mRNA upstream 142 14329747 ~ 14334066 (-) False ino80e
XM_043262005.1 mRNA upstream 11059 14340664 ~ 14357370 (-) False si:dkeyp-77h1.4
XM_043262003.1 mRNA upstream 11059 14340664 ~ 14357370 (-) True si:dkeyp-77h1.4
XM_043262002.1 mRNA upstream 27948 14357553 ~ 14365755 (-) True mdc1
TU166030 other downstream 24039 14234554 ~ 14301619 (-) True G112478
TU165859 other downstream 641749 13654060 ~ 13683909 (-) True zgc:92606
TU164609 other downstream 2913881 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 3039226 11270664 ~ 11286432 (-) False G111450
TU164397 other downstream 3459230 10861951 ~ 10866428 (-) False LOC122360812
XR_006252733.1 other upstream 579720 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 1138875 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 1138875 15468480 ~ 15496375 (-) False rps19
TU167051 other upstream 1138875 15468480 ~ 15495722 (-) False rps19
TU167049 other upstream 1163216 15492821 ~ 15496375 (-) True rps19

Expression Profile