RNA id: XM_043261611.1


Basic Information

Item Value
RNA id XM_043261611.1
length 2396
RNA type mRNA
GC content 0.50
exon number 23
gene id zgc:113232
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 22335163 ~ 22344100 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATGTATGAAGGCTCATTAGTCGATCGATATGATGAGCAATCTGGATACACTCACAGTGTCGAGTATCCTGCAGAGTCCAAACGTGGCAGTGAAGATGAACACTCAGCATCCGGCTTTGACCCCTATGCGCCTGCAGCCACCGTGGTCACCATGATCACTGAGGAAACTTATCCGTACAACACACCCGTGGAGTCTTTTGATTATGCCAAAGAGGATAAAACCTTGATAACACAGGTCCCCTATGGAGGGGATGCTGAGCTGGGACAGGAGGGACCGACTGAATGTGACTGTGAAGCAGGAGAGCCTGGATTTGGAGGCTTTGCTGGACCTAAGGGTTCTAAGGGTCTTCACGGCAAACACGGGTTTCCTGGGGTTCAAGGAAGGGAGGGTTACAAAGGAACCAAAGGagtgagaggaagaggaggagacaCCGGTCCTGAGGGCGACTCTGGGCCTGATGGAGAGGATGGAGCATCTGGTTTCTCTGGTGCAATTGGCTTTCACGGGTTACCAGGGGACCCTGGTGAAACTGGCCAAGCTGGATCAAAGGGTGATGTTGGAATCGAAGGTCCGCGTGGAGGAGTGGGTGTTCCTGGAAAGACTGGTTCTGCTGGTGCAAAAGGTAAACCTGGAAAACAAGGCGGTAAAGGTACTAAGGGTTCCATTGGCAAAACAGGAAAACAAGGTCATGAAGGAAAACAAGGACAGAAGGGTCAGACAGGAGCACCTGGATTCACAGGAGACCGTGGAGAGCAGGGTTACTTGGGTTATACAGGAGTGCCAGGAGGCCGTGGGGTGACGGGACCGAAGGGTTCCAAAGGTGCAGGTGGCTTGCCAGGAAGTGATGGCGAGCCAGGCGAGGATggACCTCTGGGTGTTCCGGGAGTTGAAGGGGTGCCTGGAACTTTTGGACctaagGGTTTGAAAGGTGATCGTGGTGAAAGGGGGCGACAAGGAAGAGTAGGAACTGTGggTCCACAAGGAGACAGCGGGGATGCAGGGGTTCCGGGGAAACCTGGACCAAAAGGCTTACCTGGGCCAACAGGTGCCAAAGGAGAAACAGGATCAGATGGTGAAAAGGGTGCAATAGGGCGCAAAGGAGGGAAGGGTTTTAAAGGAGATAAGGGAGGCGCTGGATCTCGTGGTGACAAAGGACAGCAAGGGGTTAAGGGTCGTTTCGGTCGTGATGGGCTTCCTGGTCCTATTGGACCTCCAGGTCTTCCAGGTCCCAGAGGTGACAAAGGCCCTATAGGAGACCAGGGAGGGAAAGGACAGAGTGGGCCTAAAGGGGAACCAGGTGAACCTGGTCCAGGACTGACGGATGAGCAGATATTGCAGCTGTGTCAAGGTGTGGTCACTGCTCAGATCTCCCAGTATGCTTCATCTATCCGTGCCAAATGCGTACAGGGCTGTCCAATCAACAACCGTACCCTCATCGGCCCCCCAGGAGTCACAGGACCCCCTGGAAGTTCGGGCAAACCTGGTAAAGCAGGAAAAGTAGGTGCTAAAGGAGAAAGAGGCCCTCAAGGAATGAAAGGTTTAGAGGGCCAGAAAGGAGCTACAGGGGACAAAGgtcCTAAAGGTCAGAAAGGACAGAGCGGTGATTCTGGAAAAGGTCTTCCAGGGCATGACGGTCACCAAGGCCCCAGAGGGCTGCCAGGCCATTCAGCAGAACCAAAAGATGGAATCGATGGGCCGCGAGGACCCCGCGGTTTTCCCGGGCCTGTGGGTCAGCCTGGCATGCTTGGCGATGCAGGAATACCCGGCGTGTGTGAGGCACGAGACTGCAGCATTCACGCGCCTGTAATGCGCAAAGAAATGGGATTGGTCAAAGGCCCTCTCGGTCAGGCCTGACAACAGGGACGAATGTGAGTGAGCCGCGACAGGAGATCATCTCCAGCAGAGACCATGAAAAAAAGTGCTGTCAGATGGAAGACATCACATACAGACAGACTGGAGCCAAGAACTGGAAATCAAATCACTACAGATTTGTCCAACAGTGAAACTAAACAATCGAAAACTACCAGCACTTTTGGTTTCATTCTTCAACAATGTTTTAGTTTCATTATTAATACAGTACagacatgtaaataattttgtaaagcatcttaaatatacatactgtgtcctgaaatattatgttttattgtcttGTTTCAAGCTGAATTAAAGATCATTTTTTGTAAACGTGTTAAGCCGTGTTTTATTGTGTGGCATGAATATAGTGTAAATACAAAATTGCTTGTCATTGTTCAGGAAATCAtagcattttgaataaaatccgtttaggaaaaaaaaaatctgaataaattatgaaaggCAGAACTAATTTGTTTATGACAGGGAAATATTAATgtcaataaatgtaatcattatAGTGTAGTGtaccaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170171 lncRNA downstream 98097 22230240 ~ 22237066 (-) True G115262
TU170039 lncRNA downstream 461112 21873826 ~ 21874051 (-) True G115170
TU170024 lncRNA downstream 509726 21825198 ~ 21825437 (-) True G115155
TU169974 lncRNA downstream 720984 21605980 ~ 21614179 (-) False cenpw
TU169954 lncRNA downstream 946016 21388815 ~ 21389147 (-) True G115098
TU170280 lncRNA upstream 339327 22683427 ~ 22683638 (-) True G115335
TU170525 lncRNA upstream 429666 22773766 ~ 22774032 (-) True G115496
TU170565 lncRNA upstream 541615 22885715 ~ 22888001 (-) True G115536
TU170567 lncRNA upstream 548006 22892106 ~ 22901138 (-) False cdc42se1
TU170586 lncRNA upstream 566779 22910879 ~ 22911323 (-) True G115548
XM_043261610.1 mRNA downstream 3129 22330179 ~ 22332034 (-) True cd83
XM_043261302.1 mRNA downstream 126559 22179651 ~ 22208604 (-) True emc2
XM_043261301.1 mRNA downstream 126612 22179651 ~ 22208551 (-) False emc2
XM_043260245.1 mRNA downstream 205654 22124696 ~ 22129509 (-) True trhra
XM_043261389.1 mRNA downstream 246071 22087641 ~ 22089092 (-) True eny2
XM_043261609.1 mRNA upstream 3550 22347650 ~ 22351043 (-) True snrnp48
XM_043262106.1 mRNA upstream 75770 22419870 ~ 22523750 (-) True tsnare1
XM_043262107.1 mRNA upstream 76699 22420799 ~ 22523750 (-) False tsnare1
XM_043261187.1 mRNA upstream 419104 22763204 ~ 22767288 (-) True mrap2a
XM_043261382.1 mRNA upstream 435135 22779235 ~ 22797020 (-) True plekho1b
TU170138 other downstream 246109 22087649 ~ 22089054 (-) False eny2
TU170105 other downstream 366628 21964855 ~ 21968535 (-) True G115207
TU170018 other downstream 531359 21801475 ~ 21803804 (-) True G115149
TU170010 other downstream 630204 21704018 ~ 21704959 (-) True G115141
TU169980 other downstream 773947 21560221 ~ 21561216 (-) False G115116
TU170599 other upstream 588527 22932627 ~ 22933967 (-) True G115554
TU171080 other upstream 1175708 23519808 ~ 23524382 (-) True G115882
XR_006252802.1 other upstream 1244085 23588185 ~ 23609841 (-) False usp45
TU171098 other upstream 1325798 23669898 ~ 23675298 (-) False mchr2a
TU171232 other upstream 1982607 24326707 ~ 24327973 (-) False phactr4b

Expression Profile