RNA id: XM_043261647.1


Basic Information

Item Value
RNA id XM_043261647.1
length 1471
RNA type mRNA
GC content 0.48
exon number 13
gene id dap3
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13061035 ~ 13066879 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTAACTTCCGACGTCTTTCGGAACAATGATGGCGACCTCCATCGGCCGTGGCCCGTGACAGTACGACCGTTCACGTCAACCCGCTATCCGTAGTTATCGAGTTGTATATAACTCCTGattgacattttgttttcttcgcTTTTGTCTTTTATCCCAGAGTTTCAGAACATGAATCTGCACAAACTGTCCTCTCGACTGTGCCCTACAGTAACACAGAAGTTCAGGCATCTCCACATCCAAAGCAGCGGCCAGCAGGCAGTTGCTGTGGAAACGCAGTCAGTTGAATCAAATCCTCTGTCAGTCTTCAGAACCCCAGAGCAGGATCCAACGTACCATTCAGAAAGACATACTGGGCAGTACTACACGCTCCCAACGGCTCACATCCAAAAACTTTTCCCTCATGGACTGCCTCCACGCTTCCAATTACAGATTAAAACGTTTAATGAAGGCTGCGTGATGGTGAGGCCGCCGGCGCTGGAGCTCATCTCATATCTTAAAAAGGCTGATTACAGCAAGCCTCCGCTGCGTTATATGCTCTATGGAGATCTAGGCACTGGAAAGACCATGTGTTTGAGTCATGCCCTGCACTACTGCTACACTCAGGGCTGGCTGATCGTACACGTCCCCGATGCTCATCTGTGGGTCAAGAACTGTAAAGAGCTGCTACCATCGTCTTCCCGTCCTTCACGCTTTGACCAGCCAATCCAGGCATCCCAATGGCTGAAGAACTTCAAAATCACCAATGAACGCTTTTTATCCAAGATAAAGACAACACAGCGGTATGTATGGACAAAGAGAGAAAGTACTGAAAAGGGGCAGCCTTTAGGGGAGCTTGTTGATCAGGGTGTGAACCGCATGAAGAGCAGCAGTGATGTGGTGGGTGCAGTGCTGCGAGAGCTGAGGCTGCAGGCAGGGGGCGCCACCGAGGGAGAGGGGGCCTTCAAACTGGCCGTGGCTGTCGACGGATTAAATGCTCTGTGGGGCAAAACATCTCTTAAAAAGGAGGATAAAACTACGTGTGAGCCCACGGAACTGACTTTGATTCATAATCTGAGGAAGATGGTGAAAAACAACTggACTGGAGGTGCCATTCTCACAGCTTTGTCTCAGACCGGCTCTCTGTTCCAGCCACGGTCTGCTTACCTTCCTGAAGAGCTACTAGGAGAGGAGGGGTTTGAAAATATGGATCCTTTCGTGCCCATTTCTGTGTCTGACTACAATGAGAAGGAGTTTGAGAGCTGTTATCTTTACTATTTAGACCGCAACTGGCTGCAGCATCAACACAGTCGATctgaagaaggaaagaaagagctTCTCTTTCTCAGCAACAAAAACCCATCCATCCTGGAACGATTGTGTGCTTTCTTGTAAGGCACATTTGGCTACTCTTGCTCTCTGTAtatcataaaaattaaatgtataagcTTGCAgcttttttcataataaaataattttgaaaaacgtGGAAAA

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0001666 response to hypoxia biological_process
GO:0005761 mitochondrial ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component

KEGG:

id description
K17408 DAP3, MRPS29; small subunit ribosomal protein S29

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165647 lncRNA downstream 34906 13024933 ~ 13026129 (-) True G112229
TU165121 lncRNA downstream 408629 12567205 ~ 12652406 (-) True G111862
TU165120 lncRNA downstream 436416 12567205 ~ 12624619 (-) False G111862
TU165116 lncRNA downstream 449041 12557811 ~ 12611994 (-) True G111860
TU165016 lncRNA downstream 570915 12489782 ~ 12490120 (-) True G111799
TU165679 lncRNA upstream 121876 13187919 ~ 13200640 (-) False G112256
TU165680 lncRNA upstream 130835 13196878 ~ 13200640 (-) True G112256
TU165691 lncRNA upstream 147887 13213930 ~ 13227818 (-) True G112261
TU165689 lncRNA upstream 151160 13217203 ~ 13249624 (-) True G112260
TU165746 lncRNA upstream 223162 13289205 ~ 13292423 (-) True G112299
XM_043260518.1 mRNA downstream 108 13055397 ~ 13060927 (-) True gba
XM_043260517.1 mRNA downstream 12632 13042826 ~ 13048403 (-) True polr3c
XM_043260696.1 mRNA downstream 85241 12947950 ~ 12975794 (-) True deptor
XM_043261929.1 mRNA downstream 117332 12839061 ~ 12943703 (-) False col14a1a
XM_043260522.1 mRNA upstream 34815 13100858 ~ 13116095 (-) False rusc1
XM_043260521.1 mRNA upstream 34815 13100858 ~ 13116095 (-) False rusc1
XM_043260520.1 mRNA upstream 34815 13100858 ~ 13116095 (-) True rusc1
XM_043260525.1 mRNA upstream 50434 13116477 ~ 13119873 (-) True fdps
XM_043260183.1 mRNA upstream 54823 13120866 ~ 13123887 (-) True LOC122359944
TU164609 other downstream 1649258 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 1774603 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 2177824 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 2194607 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 2312735 10746793 ~ 10748300 (-) False LOC122361037
TU165859 other upstream 588017 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 1168511 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 1843282 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 2402437 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 2402437 15468480 ~ 15496375 (-) False rps19

Expression Profile