RNA id: XM_043261660.1


Basic Information

Item Value
RNA id XM_043261660.1
length 540
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC122360799
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 8239331 ~ 8256537 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGAAGGTCAGTGGTGTGAACACCCCCATGAGCCGCAAAAGAGAGCACCGGGTTCTACTCATGGTGATCACCATGGTGATCTTCTATCTACTCTGCTGGCTGCCTTATGGGATCATGGCTTTGCTAGCCACTTTTGGAACCCCAGGactggtgactgtggaggctAGCATAGTGCCATCCATCTTAGCGAAATCAAGCACGGTCATCAATCCTATCATCtacattttcatgaataaaCAGTTCTACAGGTGTTTCAGAGCTCTTTTCAACTGTGACCAACACCAGCGATGTTCTAGTCTGAAAAGTTCTTCAAAGGTAACTAAACCAGTTCGGCCTGGACGACGCACAGACAACTTCACTTTTGTGGTTGCTTCATTGGGACCCACAGCGCTGCCCAACCAGGCAAACCCAGCTGAAGACGGCCCTCTATCAACAGATAATGCCAAACCTGCAGTGGTCTCCTTGTGGCCCATTATAATGGTTGAGAGTTATTCTGCTTCAAAAATGGTGACACTTGAAGAAacttttcacacaaaatga

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163331 lncRNA downstream 155 8237758 ~ 8239176 (-) True G110548
TU163329 lncRNA downstream 3538 8234908 ~ 8235793 (-) True G110546
TU163299 lncRNA downstream 155506 8083369 ~ 8083825 (-) False mkxb
TU163295 lncRNA downstream 156031 8082900 ~ 8083300 (-) False mkxb
XR_006252839.1 lncRNA downstream 246464 7988950 ~ 7992867 (-) True LOC122360778
TU163610 lncRNA upstream 291245 8547782 ~ 8551552 (-) True G110753
TU163615 lncRNA upstream 291245 8547782 ~ 8551552 (-) False G110753
TU163638 lncRNA upstream 333361 8589898 ~ 8590634 (-) True G110773
TU163682 lncRNA upstream 588988 8845525 ~ 8845993 (-) True G110807
TU163727 lncRNA upstream 744250 9000787 ~ 9001428 (-) True G110836
XM_043260193.1 mRNA downstream 38992 8195101 ~ 8200339 (-) True adipoqb
XM_043260404.1 mRNA downstream 95377 8105226 ~ 8143954 (-) True mpp7b
XM_043260483.1 mRNA downstream 146876 8082906 ~ 8092455 (-) False mkxb
XM_043260482.1 mRNA downstream 146876 8082906 ~ 8092455 (-) True mkxb
XM_043260585.1 mRNA downstream 165027 8067575 ~ 8074304 (-) True LOC122360189
XM_043261753.1 mRNA upstream 39489 8296026 ~ 8298481 (-) True LOC122360914
XM_043261729.1 mRNA upstream 85063 8341600 ~ 8363640 (-) True LOC122360896
XM_043261737.1 mRNA upstream 178109 8434646 ~ 8451791 (-) False pals2a
XM_043261735.1 mRNA upstream 178109 8434646 ~ 8451791 (-) True pals2a
XM_043261739.1 mRNA upstream 178109 8434646 ~ 8451726 (-) False pals2a
TU163327 other downstream 22736 8216029 ~ 8216595 (-) True G110544
TU163302 other downstream 146978 8090651 ~ 8092353 (-) False mkxb
TU163187 other downstream 408614 7828820 ~ 7830717 (-) False LOC122360680
TU163145 other downstream 620746 7610629 ~ 7618585 (-) False cdkal1
TU163147 other downstream 620746 7610834 ~ 7618585 (-) False cdkal1
TU163340 other upstream 42252 8298789 ~ 8302245 (-) True G110554
TU163343 other upstream 55728 8312265 ~ 8316685 (-) True G110556
TU163623 other upstream 376813 8633350 ~ 8636222 (-) True wu:fj39g12
XR_006252934.1 other upstream 390877 8647414 ~ 8647555 (-) True LOC122361375
TU163829 other upstream 889393 9145930 ~ 9152183 (-) True G110911

Expression Profile