RNA id: XM_043261679.1



Basic Information


Item Value
RNA id XM_043261679.1
length 1002
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC122360822
representative True

Chromosome Information


Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 11493099 ~ 11501213 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATGCGAGAAAAAGCCATCCAGGCCTCTACTTCTCACGTATGGCTGGGTCTCCGTTACACCTGCACCTTCAACTTCTGGTTCTGGATAAAGAACAGAGAAGCAGGCTGTTACCAGAACTGGGCGCCTGGTCATGGGCCACGTGGTTGCAGGAGTGTGGGCTGTCAGGAGCTATGGAGTCCACTGGAGGGCACCGTTGGTGCTTTTGTCCTTCACTTCGAGCCAAATATCTCACCGGTATCACTTCGTAAATATCAGAAAGAACTGGAGCGATGCTCAGAGATTCTGCCATCAGAGCAACTTTTCATTTCGTTTTGGAATATCAACCTGCCGAAACCCATCGGCAGACACCGCAACTGTACTGTAGTGATGGTGAACCGAACAGGGAGATGGAAAAGCATCCGATGTGACACCACTCTGCCCTTCATCTGTCACGGTGATCTTAAACCAACCACTAAACCAGCAACCACAACCAGACAGAATCCAAGTGCATCtctcaaatCTATTCCTGGATCAGCAACAACACAGAACAGACCACTTCAAAACACAACCGATGCGGGATATACAAACAGTAAGACAATGCAAATAATCACAAGTGCAGAGCAAGATAACCTGATTCTGGTCCGTGAGAACCTGACGTGGACAGAAGCTGCGAGTTACTGCAGAAAGCACCACGTGGACCTGGTCTCCATTCACAGCGAGGAGCTTCAGAGCAGGACGGCGAGAAAAGCCATCCAGGCCTCTACTTCTCACGTATGGCTGGGTCTCCGTTACACCTGCACCTTCAACTTCTGGTTCTGGATAAAGAACAGAGAAGCAGGCTGCTACCAGAACTGGGCGCCTGGTCATGGGCCACGTGGTTATGAGGAGTGTGGGCTGTCAGGAGCTATGGAGTCCACTGGAGGGCACCGTTGGGTCGGGAGACCGAGAGACAGAAAGATTCAATTTCATCTGCCAAATATGTACTGGTGCGTTCTGACCACAAAAAGAGAAGAGACTGAATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU164633 lncRNA downstream 4272 11487682 ~ 11488827 (-) True G111508
XR_006252826.1 lncRNA downstream 11872 11480106 ~ 11481227 (-) True LOC122360676
TU164553 lncRNA downstream 159437 11333175 ~ 11333662 (-) False LOC122360600
TU164543 lncRNA downstream 206667 11269620 ~ 11286432 (-) True G111450
TU164549 lncRNA downstream 226274 11266596 ~ 11266825 (-) True G111453
TU164642 lncRNA upstream 42703 11543916 ~ 11544332 (-) True G111516
XR_006252859.1 lncRNA upstream 61665 11562878 ~ 11569737 (-) True LOC122361126
TU164699 lncRNA upstream 161705 11662918 ~ 11666274 (-) True G111559
TU164700 lncRNA upstream 161705 11662918 ~ 11666274 (-) False G111559
TU164770 lncRNA upstream 272706 11773919 ~ 11774181 (-) True G111623
XM_043260630.1 mRNA downstream 39590 11437373 ~ 11453509 (-) True LOC122360214
XM_043261361.1 mRNA downstream 106106 11335966 ~ 11386993 (-) True LOC122360600
XM_043261174.1 mRNA upstream 97118 11598331 ~ 11614258 (-) True skap2
XM_043261171.1 mRNA upstream 118300 11619513 ~ 11630905 (-) False hoxa2b
XM_043261170.1 mRNA upstream 118300 11619513 ~ 11621949 (-) False hoxa2b
XM_043261169.1 mRNA upstream 118300 11619513 ~ 11621777 (-) True hoxa2b
XM_043261175.1 mRNA upstream 127886 11629099 ~ 11633344 (-) True hoxa9b
TU164609 other downstream 81322 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 206667 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 609888 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 626671 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 744799 10746793 ~ 10748300 (-) False LOC122361037
TU165859 other upstream 2152847 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 2733341 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 3408112 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 3967267 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 3967267 15468480 ~ 15496375 (-) False rps19

Expression Profile