RNA id: XM_043261710.1


Basic Information

Item Value
RNA id XM_043261710.1
length 2403
RNA type mRNA
GC content 0.48
exon number 17
gene id LOC122360867
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23064745 ~ 23072189 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atgtatatagtGTATCCTTCCCGTATCGAAAAGATTGATTACGATGAGGGGAAAATGCTTGTGCATTTTGACCGTTGGAGCCATAGGTACGATGAATGGATTCTCTGGGACAGCAACAGACTTCGACCATTAGAGAGACCAGCGCTCCGCAAAGAGGGTCTCAAAGAAGAGGAGGTGTCTGAGAGACTCAGCGAGATGAGAGCATCTCGCCTTCGTGAGCTTCCTGGAAGTACAGAGAGCACAGAGGACCAAAAAGACTTACCCCAGCAGAGACAAgaaTTAAGAGATGGTGAGGAGGTGCTTGCCCGATGGACAGATTGCCGCTACTATCCTGCCAAGATTGAAAGTATCAACAAGGAAGTGTATTGGTTTGTGTTCAAGCAGGACTGGATCGCTCTGGTGAAGGCTGCTTCAGCTGCAGCCAAGAATAAAGGAGGAAACAGGCCACGTACCAGCGCCAACAGCAACAAAGACCGAGAGGACAGGAGGGAACAGCGGTCGGATGAAGAGCATGAGGATGACGATGACGACGGTGATGACGATGACGACGAagacgacgacgatgatgatgtTGATGTTGATGAAGATGAGAGTGAACCAGAGAAACTCGCAGTTCCAGCAGAACTGGACTCAGCTGAGGAAGACAGTAAGCTGGCTGCTGAGGAGCTTGAACCTGCTACCGCAAAGAGGAGAAGCAAAAGACAAGGCAACTTGTGCAGCGGTAAAAGGACACGTCTCAGCAAAGGGGCAGttgaaGACAGCAGCACTGCAGTTAAAACAGAAGCTGCTCCACAAAAGCCAGCTTCAGGAAGTCCATCCACAGCTCCTCCCACTAGCACTGCTCAATCACCAATCAGTGAGAAGGACAAAATGACTGAAGTGTTGTCTAGTAATCAAACAACACTTGAAGGGAACTCACCTTCTGTACTGACAGttaTTAACACCAAGAAGTCAGATGATCCCACTGCTCCTAATGAGTCTTTAATAGACCTGGAccataataaatttaaatgtaaagtcccTGGTTGCTCTAAAGCATTCCGGAAAGCAAAACTGCTGGACTATCACCTGAAGTACTATCATAACACTGAGAAAGAAATGGACAGCGAGGTCTGCTCACCAGAAAGGGTGGGCCAACCAGGGCCCGCGTCTGCTTCCATGCCTACAAGCACCTTGTCAGATATGCCAGATAACAAGAGGCGCAGGACCGTCTCTACTTCTTCCTCTCTGTCCTCTCAGGGCTTCATGCTTCAAATGGACAGCTCTGGCTGTGTGAGGCCTCCAAAGTTCTGTAAGAAGAAACGTTCTTCTGCTTCTATTAGTTCAGACAGACTTTGTATAAAGACAGAGCGGAAATTTAAACTGGAGGATAAATGTCAGTTGTTTGCGAAAAAGAGGGATAAAGACAGAAGGGACAGGAAAGAGAAGGACATTTTCCGaattaaacagaagaaaaagaaaaaaaagaagaagaaatcaaAACTGCACTGTTACTCGGACCTGGATGAGATGTCGCTGGCTTATTTGGATAGGCCGTCTTCCCCAATACATCGCTCTTCCTCTAGTGCCTTCAAGCACAGCACCTTCCAATACCCTCACCTATCAGACATCGACTTCCTGGAAGACTCTACCACTGAGAGTTTGCTGTTCAGTGGAGATGAGTATAACCAGGATCTGGACTCCATCACTATGGAAGACTTCCAGGATGAGGAAGATGATGGTGCCGATGAAATTGTTCGTTGCATCTGTGAGATGGATGAAGAAAACGGCTTTATGATTCAGTGTGAGGAGTGTATGTGCTGGCAGCACAGTGTGTGTATGGGACTTTTGGAGGACAGCATCCCTGATCACTACATATGTTACATCTGCAGAGACCCTCCAGAGAACTACTCTCATCAGAACGCCAAGAAGATCGTGTCCACTCACCAACTGCTGGCTGATGTTTACAGTGTTAAAAACTTGCTCCATGGACTTCAGCTGAAGATGGATATTTTACAaaacaaacacaacccaAGTTTGCACTTGTGGGCCCGGTCTTGGGTGAATTCTGATGAGGACCAACCTATGGGTGGCGTTCCAGACTGCCTACATTTCAAAGAGCACCTCAACCAGAACTCAAGCCCTCAAACTTATATTACAAGTGAGCACAGCTACCAGAAACCTCCCGGTACAGGCCTCGAACACACAAGGGATGAGCAGGGGATGCAAACGGCATCTCAGTTTAACCGAAAGGAGGAAGAGGTGAGCAGTGCCATTGCTCTGTCTGGCTGTGTGAATGACAGCAATATGGGCTCCGTGGAGCAGGCCAGGAACTGTCTGCAATGGCAGATGAACCTGCTTACACACATAGAGGATGCAGAACCAGCTGTCTGGCCGTATGGACCTCCTCGAGAAAGAGCTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170664 lncRNA downstream 8215 23056095 ~ 23056530 (-) True G115601
TU170657 lncRNA downstream 12470 23050307 ~ 23052275 (-) True G115599
TU170656 lncRNA downstream 14902 23049549 ~ 23049843 (-) True G115598
TU170655 lncRNA downstream 16050 23046482 ~ 23048695 (-) True G115597
TU170654 lncRNA downstream 18452 23046022 ~ 23046293 (-) True G115596
TU170681 lncRNA upstream 70 23072259 ~ 23073450 (-) True G115611
TU170608 lncRNA upstream 2114 23074303 ~ 23077870 (-) True G115563
TU170613 lncRNA upstream 2114 23074303 ~ 23077870 (-) False G115563
TU170695 lncRNA upstream 93004 23165193 ~ 23167940 (-) True G115621
TU170714 lncRNA upstream 112861 23185050 ~ 23189650 (-) True G115631
XM_043260164.1 mRNA downstream 81854 22977925 ~ 22982891 (-) True LOC122359931
XM_043260054.1 mRNA downstream 134828 22915967 ~ 22929917 (-) True LOC122359864
XM_043261867.1 mRNA downstream 163558 22892102 ~ 22901187 (-) True cdc42se1
XM_043261414.1 mRNA downstream 249650 22812569 ~ 22815095 (-) True si:dkey-23o4.6
XM_043261382.1 mRNA downstream 267725 22779235 ~ 22797020 (-) True plekho1b
XM_043260337.1 mRNA upstream 9040 23081229 ~ 23089594 (-) True LOC122360042
XM_043260604.1 mRNA upstream 17768 23089957 ~ 23096651 (-) True LOC122360196
XM_043260608.1 mRNA upstream 25078 23097267 ~ 23102702 (-) True LOC122360198
XM_043260610.1 mRNA upstream 30981 23103170 ~ 23109883 (-) True LOC122360201
XM_043260617.1 mRNA upstream 45309 23117498 ~ 23121209 (-) True rbp5
TU170599 other downstream 130778 22932627 ~ 22933967 (-) True G115554
TU170138 other downstream 975691 22087649 ~ 22089054 (-) False eny2
TU170105 other downstream 1096210 21964855 ~ 21968535 (-) True G115207
TU170018 other downstream 1260941 21801475 ~ 21803804 (-) True G115149
TU170010 other downstream 1359786 21704018 ~ 21704959 (-) True G115141
TU171080 other upstream 447619 23519808 ~ 23524382 (-) True G115882
XR_006252802.1 other upstream 515996 23588185 ~ 23609841 (-) False usp45
TU171098 other upstream 597709 23669898 ~ 23675298 (-) False mchr2a
TU171232 other upstream 1254518 24326707 ~ 24327973 (-) False phactr4b
TU171647 other upstream 2595630 25667819 ~ 25676410 (-) False LOC122361130

Expression Profile