RNA id: XM_043261729.1


Basic Information

Item Value
RNA id XM_043261729.1
length 3479
RNA type mRNA
GC content 0.50
exon number 21
gene id LOC122360896
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 8341600 ~ 8363640 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGACTCCAGCGACAATAAAGCAATACATTCAATTATCATGTAATATTAAACTCATAATGACTGCGCAATGGGCTATTCATCCAGCTGGAATATACGTATTATGGATAGActtttaatgacaaataaaagcagccatTATTTTCAGACTGGGGCTACTTCAAAAGTGTTCAATAAAGGAACATATTAGaacatattctctctctctctctctctctctctctctctgtctgtcacacacacacgggtaGCTATAAAAAGACCTTCACGAAACAACAACAGATTCGTTAAACTTCCACCAGACACACAAAAGAGAAACATCCATTTAGTCTCAGAAACACTGAACAGACCATTCGCTTGCTTTCATGTTTATTTAGGGCTCTTTAGAGGAAATCTGCGTCGCTTGAACAAATCGCTTATTACTACTTCAACGTCATCGCGCATCggtcatatttcattattcatttgacCGTTTAACTCCACGAGCCTCATAAAAGACAGCGCGAGGAGGAAGGCTGGAGAACGGCGATGTGTGAATGGCAGATGGACGCGTGAAGCGCGCGCAGCAGCAGTAGCTGAGCGTTACTGCAGACGGCTCCACGACACTTTGGCGGCGCAGACATGACAACTTTTGATTTTTCCGACGTGGAGGCGTTTTTGGATTGCCACCCGGAGCTCTTTGAGGAATACCTCGTCAGGAAGGGGAAATGCGACACCCTGAGCAGGTGGCTCAAAGAGCACCCGCCGTCCAAAACCTCTCCGGCGGCGGAGGAGAAGCGCGGCGCCGCGAGGGATCCCTTCTGGCCCATGAACCCCGACGGGCTGAAGCGCAGATCGTCCCACATGGAGCTCCGCAGGAACGCCGCCCGCTCCAAAGCGATGACGGCGCACCGGACCTACGACGAGCACGTCAGTCTCGCGGCTCACGAGTCCCAGTCGAGCATGCGACGGCGCGCGCTGCTGCGGAAAGCCAGTTCGTTGCCGCCGACCACGGCGCACATCTTGAGCGCGCTGCTCGAGTCCCGGGTGAACGTGCCTCAGTATGCCTCCAGCGCCATCGACTACAAATACAGACTTAAAGAGTCCAACGAGAGGGAGTTCTTCCTCGAGCTGGTCAAAGACATTTCTAACGAACTTGACATGACGAACCTCAGCTACAAGATTCTTATCAACGTGTGCATCATGGTGAACGCAGACAGGTGCTCGCTTTTCCTAGTGGAGGGACCGTCTCATAAGAGGACGCTGGTGTCCAAGTTTTTTGACGTGCACTCGGGTACGACGGTGCGACCCTCTTCGAGCACTCTGGACTCAAACGAAGTCCAGGTTCCGTGGGGAAAAGGCATAATAGGTTATGTAGCAGAACACGGAGAAACCGTCAACATCCCGAACGCATACGAGGACCATCGTTTCAGTGATGAAATCGACAAGCTGACGGGCTATAAGACTCAGTCCATTCTGTGCATGGCCATCCGCAACAGCGACGGAGAAGTCATCGGCGTAGTGCAGGCCATCAACAAGAACCCCAGCGGGACTCCATTCACAGAGGACGATGAGAAGGTGCTTCAAATGTATCTACCATTCTGTGGAATATCGATCTCCAACGCCAAACTCTTCTCCGAATCCCGCAAGGAGTATGAGAGGAGCAGGGCCCTGCTGGAGGTGGTGAATGATCTGTTTGAGGAGCAGACGGACCTGGAGAAGATCGTGAGAAAGATAATGCAGCGTGCGCTGACATTGCTGCAGTGTGAGCGATGCTCGGTGCTACTGCTGGAAGACATCCACTCTCCCGTAGTAAAGTTCTCCCAGACCTTTGAGCTCATGTCTCCGCTGTGCAGCGTCGATCGTGACATCAGCATGGAGAAGGTGTCTTGTTCGGACTGGCTGATCAATAACAGCATTGCTGAGTTGGTAGCATCCACCGGGCTGCCTGTTAACATCAGTGACGTCTGTCAGGACCCCCGCTTTGATGCTGAGGCAGACCAGGCTTCTGGTTTTCATATCCGATCAGTTTTATGCGTCCCCATCTGGAATCGGACACATCAGATTATTGGCGTTGCCCAGATTCTGAATCGCTTGGACAGAAAGACATTTAATGACGCAGATCAAAGGTTATTTGAGGCATTTGTTATTTTCTGCGGTCTGGGCATTAACAACACAATGATGTATAACCAGGTTAAAAAGACTTGGGCCAAGCAGTCTGTGGCTTTAGATATGTTGTCTTATCATGCTACATGCTCCAAGGCAGAGGTTGATCGACTGAAGGCTGCTAAGATTCCCCTAAGCAGCGAGCTCGGGATCGATGAGCTCCACTTTAATGACTTTTCTCTGGACAACGACGCCATGATCACTGCCTCCCTGCGGATGTTTTTGGAGCTCGGTGTGGTGCAGAAATTCAAAATTGATTACGAGGTGCTGTGCCGCTGGCTGCTTACCGTGAGGAAGAACTACCGCACCGTAGCCTATCACAACTGGAGGCATGCCTTCAACGTCTCGCAGTGCATGTTTGTTATGATCACCACTGCTGGGTTCCAGGAGGTGCTGACAGACACCGAGACTCTTGCGCTTATGGTTGGGTGTTTCTGCCATGACCTCGACCATCGTGGCACTAACAACGCCTTTCAGGCAAAGTCTGGCTCAGCACTTGCTCTCCTGTACGGAACATCTGCCACGCTTGAGCATCATCATTTCAACCACGCCGTCATGATCCTGCAAAGTGAGggtcACAACATTTTTGCAAATCTATCCTCCAAAGAGTACAGCAACATGATGCAGCTACTGAAACAGGCCATTCTGTCCACAGATCTCACCTTGTACTTCAAaagaagaacCAAGTTCTTTGAGTGTGTTTTGTCGGGACAGTTCAGTTGGAGTAATGAAGAACATAGAGACGTGTTTAGGTCTATGCTGATGACTGCGTGTGACTTGGGTGCAGTGACTCGACCATGGGAGATCTCAAAACAGGTGGCTGAATTGGTGACCAGCGAATTCTTTGAACAAGGTGACAGGGAAAGATCAGAGCTGAAGCTTACACCGGCTGCCATTTTTGATCGCAATCGTAAAGATGAGCTTCCCGTGCTCCAGTTAGAATGGATTGATGGAATTTGCAAGCCGTTATATGAGGCGCTTGTGAAGTTGAATAGGAAGCTTCAGCCGATGGTAGATGGAATTGATGCCAACCGAAAGAAGTGGGAGGAGCTTTGTCGTTCATTTCAGCAAACACGGAGAGCCTCTGAGTGCATCTCCAGTCTGGAAGCAGGAGAGACAGAAACGCCTCAGAGTCCAGACTCCACCCACGAGCCGGAATCAAGTCAGAGTGAGGTGACCAATCAGAGACGAGACTCCACCCACTGTGTGGAGCCAAGTCAAGCCACGATAGCCAATCACAAATAAGAGGCGTGATGTGACCATTAAAGGACGGCCCACTGAGTCAGGGGTTCCCAAACGACTTTTTTCTGAAccttattttaagttatttagattt

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG:

id description
K13298 PDE11; dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163331 lncRNA downstream 102424 8237758 ~ 8239176 (-) True G110548
TU163329 lncRNA downstream 105807 8234908 ~ 8235793 (-) True G110546
TU163299 lncRNA downstream 257775 8083369 ~ 8083825 (-) False mkxb
TU163295 lncRNA downstream 258300 8082900 ~ 8083300 (-) False mkxb
XR_006252839.1 lncRNA downstream 348733 7988950 ~ 7992867 (-) True LOC122360778
TU163610 lncRNA upstream 184142 8547782 ~ 8551552 (-) True G110753
TU163615 lncRNA upstream 184142 8547782 ~ 8551552 (-) False G110753
TU163638 lncRNA upstream 226258 8589898 ~ 8590634 (-) True G110773
TU163682 lncRNA upstream 481885 8845525 ~ 8845993 (-) True G110807
TU163727 lncRNA upstream 637147 9000787 ~ 9001428 (-) True G110836
XM_043261753.1 mRNA downstream 43119 8296026 ~ 8298481 (-) True LOC122360914
XM_043261660.1 mRNA downstream 85063 8239331 ~ 8256537 (-) True LOC122360799
XM_043260193.1 mRNA downstream 141261 8195101 ~ 8200339 (-) True adipoqb
XM_043260404.1 mRNA downstream 197646 8105226 ~ 8143954 (-) True mpp7b
XM_043260483.1 mRNA downstream 249145 8082906 ~ 8092455 (-) False mkxb
XM_043261737.1 mRNA upstream 71006 8434646 ~ 8451791 (-) False pals2a
XM_043261735.1 mRNA upstream 71006 8434646 ~ 8451791 (-) True pals2a
XM_043261739.1 mRNA upstream 71006 8434646 ~ 8451726 (-) False pals2a
XM_043261738.1 mRNA upstream 71006 8434646 ~ 8451471 (-) False pals2a
XM_043261736.1 mRNA upstream 71006 8434646 ~ 8448647 (-) False pals2a
TU163343 other downstream 24915 8312265 ~ 8316685 (-) True G110556
TU163340 other downstream 39355 8298789 ~ 8302245 (-) True G110554
TU163327 other downstream 125005 8216029 ~ 8216595 (-) True G110544
TU163302 other downstream 249247 8090651 ~ 8092353 (-) False mkxb
TU163187 other downstream 510883 7828820 ~ 7830717 (-) False LOC122360680
TU163623 other upstream 269710 8633350 ~ 8636222 (-) True wu:fj39g12
XR_006252934.1 other upstream 283774 8647414 ~ 8647555 (-) True LOC122361375
TU163829 other upstream 782290 9145930 ~ 9152183 (-) True G110911
TU163906 other upstream 907331 9270971 ~ 9272605 (-) True G110974
TU164366 other upstream 2383153 10746793 ~ 10748300 (-) False LOC122361037

Expression Profile