RNA id: XM_043261734.1


Basic Information

Item Value
RNA id XM_043261734.1
length 2890
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC122360899
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 8540602 ~ 8544277 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aacactgatctTGGATTCTCAttatatgaagatattttgatttttttttaattatgcagatGTTAAATATTGCTTACTTGtgtgaataaatgcaaaactaCATTGTGTTGTCATgatgtaaaaaggaaaaaagatatgagaagaaataaataaaaaataatagtgagTAAGTAAAAATGTTGAACTATCCCATTTTAGACATGCTTTACCGTGTGGACATGTTTGGAATTAGTTAAACAGGTCTATTAACAGTTGTCCAACAGTGAATATACGTCACAGCATGAATTCTTTAATTTAGAGTCAACTACCCCTTTAACAAAATGATCTACTTTTAAATCATGTCATATTTCCTGTTCTCTGGATCTTGTTCCATTATGTTGAACGCCCCCATAGATATGTAAAAACAGCACTTTGTCTGAGGACTGAAAAGTGAAGGCAATTTGTCTGTGGCAACCAGCAGAGCTCTCAGGCAGGAGAATGTCTTAATGAGGGTCCGAGATTAAAGACATCAATTAAAGGGCCGTTAAGCGCTTAACCGGTGCGTAGTGTTTGCTAACACTTAACAAGCGCCGTTTTTTGACAATGCACACGGCCCGAACCAGTTGACTTCTAGGtaattgcttttcttttcatttcgcTGTTCTTCTCTTTAATGGTGCCGTCTTGCCATCCTTTATCTAAGCAGACAAAGAATGGCTCGTTCTGTGGCATCATCAATGAATCGATGCCACCCTCCCCTCATCattcgctctctctttctctctctctctctctgtctctttccgTCTCTGTTTTTTGGTCAGTCAGGGTGCATGACCCGTGTTCTTCATCTCAAAGCGGATTCTTACTGAGCAACAGAAGCTATGCGTCCGTCCAGTATTTTGACCTTTGAAGCGGGGTTGGAGTCTGGAGTGCCATGGGGCCGTGATCTTTTTACTTTTGTGACTTCAGCAGCTGGTCACATGATGAGGACCTTGCAAAGACCACGTAAAAACAAGCCATCAAAAAGACAAGTCAATCATCGCAGGTTTCTGCACAACATGATACAGAGaaaatttgctgaaatagAGGCAGCGAATCATCAGCTGGCGTCTGCATTATTTTCAACTGATAAACCCCCTGATCATCTAACTCCCAGACTATCTCACATTGTAACAGAAGTCACAGACCAGTCTCCCAAACCTTCTAAAAAAGCTATCGAAACCTTTATAAATGCTGACAAAACCGAAGCGCTTCCTGAACAACAAGAAGATGTGTGTGACCTCTGGACATTGGACAGTCTTTTGGACACCCATGTGGCTGACAAAGGTTTTTCACCGTTCTCCAACAGCAAAgaaacacatccgagaactgagaAAGGCAGCGAAGCTTTGGAAAACCGTCCTGCCAGCTCAACGGAGAAGGACATCGACTTCAGCTTCAGCTTCGAAAGGCAGTCAACATCTACTGACGTAGAAAGCTTAACACAACTGAACAACAGTCTCCTAGAGGACAGCGTGTCCTCCTGGTTTGGGTCCATTGAAAGAACAAGAACCTGTTCGAAACCACGTCTCACCAAGTACCACGACGTGAAGTTGCTCCCAACAGACGTTGATGTTCAAGACCTGTCACCTCCTTCTCCGGTGATCTCATTATTGTCTTTGGATTCATGTGATTTGGAGGTCCAGATGCTCATAGACGCAGAGCGCAATGTGAACCAAGTGCAAAACGACGCCATCGCAGAGAGTCTCCAAATGGATGTGATGGACGATCTTGAACTCCTGGATTGTTCTGGTACTCATGGAGTGTGGATGGATCACGGTGAAGAGGATGGACCATGTTTACAGGAAGCGTTTCCAAGCTCTCTGGTTTCAGATCTAGAGAACCTAACAGGTTCTGGTGGTGGGACCTCCAACTCCATCTCTAATTTGGGCCAAACGGGTCATGAACTTTTTGCAGATGTTCTCTGCAGTCAAGAGCCACATAGATGTAGTTTCCATCACGATCAAATAAACTACGCCATGAACCACAATAACGTTCTAGAAGAGCGTTTTGGTCAGGCTGAAGCTTGCATGAAGACGAATGGAAAGGAGGATGGTTATTTAGATGCAGATTTTTCTGTCATGGATGGTAATGTTACAAGCAACCACATGTTCTCAGGATTTGAGAGTCAGTTGGACCAATCCAAAATGATTCTTTATGACAGCTGGGAACAACAAGCTCTAAAAAGCTCGTATAAGAACTATACAGCTGCAGATCAGATTGTGACGCAAGGCACTGATGTCAGAAATGTTGTACAGGTTGAGAATCTCAACCAGGCCCAATGCCCGATAACGTGCTGCCTCGAAGGCTTTTGTTATCATGAAGAAGACCcgtgtttttacacaaaattcaGAGGCAGTCACAACTTTGAGGGCGTGGCTAGATCTTTCCCAGCCAAGCTGCATAAGCTCCACCCCACTCCAATTCTGACTCCGCCTCTAGATGATGATTGGTTGTTCAGTAATATCGTGGCAGAGGAAGaggtaaatattataaataatacatttggaaAGTATTGACCAGTCATTGGACAGTAATTGTTCTCATGAATTTCACTGTATCCGGGGATGTTTGATTATTAcacttttatgattttatgatcATTTCTGTGAAATGTTCTTGTCTGTGgtgagaaaaatgtaatattttctgtgATGAAAACTGTATGGGTATCGTAACATATTGCAAAAacaatcaattatttaaatgaataattttaattttcaaatttaaaatgattgcatttaaaGGATTTAGTGTTTCATTGTCTTTTGTCcaatatggtttaaaaaaaggtgctttataagttatttatatattttatttttgcatttaaattacattatgagCATGAATTAAACTTTGAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163331 lncRNA downstream 301426 8237758 ~ 8239176 (-) True G110548
TU163329 lncRNA downstream 304809 8234908 ~ 8235793 (-) True G110546
TU163299 lncRNA downstream 456777 8083369 ~ 8083825 (-) False mkxb
TU163295 lncRNA downstream 457302 8082900 ~ 8083300 (-) False mkxb
XR_006252839.1 lncRNA downstream 547735 7988950 ~ 7992867 (-) True LOC122360778
TU163610 lncRNA upstream 3505 8547782 ~ 8551552 (-) True G110753
TU163615 lncRNA upstream 3505 8547782 ~ 8551552 (-) False G110753
TU163638 lncRNA upstream 45621 8589898 ~ 8590634 (-) True G110773
TU163682 lncRNA upstream 301248 8845525 ~ 8845993 (-) True G110807
TU163727 lncRNA upstream 456510 9000787 ~ 9001428 (-) True G110836
XM_043261748.1 mRNA downstream 64754 8474098 ~ 8475848 (-) True uts2r3
XM_043261756.1 mRNA downstream 74508 8454966 ~ 8466094 (-) True LOC122360918
XM_043261754.1 mRNA downstream 87382 8452823 ~ 8453220 (-) True LOC122360915
XM_043261739.1 mRNA downstream 88876 8434646 ~ 8451726 (-) False pals2a
XM_043261728.1 mRNA upstream 14059 8558336 ~ 8571473 (-) True plekhg6
XM_043261747.1 mRNA upstream 29750 8574027 ~ 8580269 (-) True tnfrsf1a
XM_043261750.1 mRNA upstream 47958 8592235 ~ 8600129 (-) True si:dkey-260g12.1
XM_043261731.1 mRNA upstream 56431 8600708 ~ 8617241 (-) True iffo1b
XM_043261732.1 mRNA upstream 56431 8600708 ~ 8617240 (-) False iffo1b
TU163343 other downstream 223917 8312265 ~ 8316685 (-) True G110556
TU163340 other downstream 238357 8298789 ~ 8302245 (-) True G110554
TU163327 other downstream 324007 8216029 ~ 8216595 (-) True G110544
TU163302 other downstream 448249 8090651 ~ 8092353 (-) False mkxb
TU163187 other downstream 709885 7828820 ~ 7830717 (-) False LOC122360680
TU163623 other upstream 89073 8633350 ~ 8636222 (-) True wu:fj39g12
XR_006252934.1 other upstream 103137 8647414 ~ 8647555 (-) True LOC122361375
TU163829 other upstream 601653 9145930 ~ 9152183 (-) True G110911
TU163906 other upstream 726694 9270971 ~ 9272605 (-) True G110974
TU164366 other upstream 2202516 10746793 ~ 10748300 (-) False LOC122361037

Expression Profile