RNA id: XM_043261737.1


Basic Information

Item Value
RNA id XM_043261737.1
length 4177
RNA type mRNA
GC content 0.43
exon number 13
gene id pals2a
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 8434646 ~ 8451791 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGTCGACGAAAGGGGCGGGTCTGAGCGCCTTGACTGACATATAGAGCGCTAGAGAGGATAAGTGCCTCGTTCTGTCTGCTTGGGGAAATTCATGGGGCTTTAAATTTCTCACCGGGACACAGGTCCACCCAGGGGGGTCAGTGAGGGTTTTTTGTCTTCATGAGCTCCAGAGTCCAGATGAGAAGAGGCTGAGCAGAAGTTCTGTGAACTGCCCTGAAATTAATTTTGCAGCCATGCAGCAGGTGCTGGATAACCTCAAGGAGCTGCCGCCTTCAACAGGAGCCAAAGACATTGACCTCATCTTCCTCCGTGGCATTATGGAGAGTCCCATAGTTCGTTCCCTTGCTAAGGCTCACGAGCGATTGGAGGATGTTAAGCTGGAGGCGGTGCAAAGTAATAACGTGGAGCTAGTGAGTGAGATCCTGTCTGATATGAGCTGTCTGACCACTCATGATGAAAGAGCAGCAGAACTCTGTAAGATCCTGAAGGAACCTCACTTCCAGTCCCTGTTAGAAGCTCACGACAAGGTGGCTTCTAAGTCATATGAAGCTCCTCCCACCAGCACCAATTCCACCAGCATGGCCAGCTCATCCCTCATGCCGGCTGACACGGTTCGCATGATCAGCATCCAGAAGAAGGCCGGAGAGCCTCTGGGTGTAACATTCCGGGTGGAGGACGGTGACCTTGTCATCGCTCGTGTTATGCACGGCAGCATGATTGACAGGCAAGGAATGCTGCACGCAGGTGACGTCATCCGAGAGGTGAACGGCCGAGAGGTGGGCAAAGACCCCATGGCATTACAGCACATGCTGAGGGACTGCAATGGAAGCATCACGCTCAAAATCTTGCCCAGCTACAGGGACACACCTCCAGCCGCACAGGTGTATCTGAAGCCACATTTCAACTACAATCCTGACACGGATAATCTGATCCCTTGTAAAGAGGCGGGTTTGGCTTTCTCTAAAGGAGACATCCTGCATATAGTGAACAAGGAGGACCCCAACTGGTGGCAAGCATGTGTTATAAATGGAGGCCGCACTGGCTTGATCCCCAGTCAGTTCCTTGAGGAAAAGAGGAAGGCTTTTGTAAGGAGAGACCTGGATGGATCAGGAATCCTTTACGGGACATTAactggaaaaaagaagaaaaagaaaatgatgtacTTGACGGCGAAAAATGCAGAATTTGACCGCCATGAATTACAGATATATGAGGAAGTAGCAAAGATGCCTCCATTCCAGAGAAAAACTCTTGTGCTGATTGGAGCACAAGGAGTGGGTCGGAGAAGCCTTAAGAACCGCCTGATTGTGTTAAACCCGCTGCGATATGGAACTACTGTACCTTTCACTTCTCGGCGTCCACGTGATGACGAAAAGGACGGCCAGTCATACTGCTTTGTGTCCcgggaggagatggagacggccATCAAGGCGAGCCGCTACCTTGAGCACGGAGAGTACGACGGTAATCTATATGGAACAAAAATCGACTCTATCCATGAAGTCGTTCGCACGGGACGGACTTGCATACTGGACGTTAACCCACAGGCGCTAAAGGTACTGAAGACATCAGAGTTTATGCCATTCGTTGTTTTCATCGCTGCTCCAGAGCTGGACACACTACGGGCCATGCACAAAGCTGTGGTGGATGCTGGGATCACAACCAAGCTCCTCACGGAAACGGACCTAAAGAAAACAGTGGATGAAAGCGCCAGGATCAAGCGGGCGTACAATCACTACTTTGATCTGACTATAGTTAATGACAATCTGGACAAGGCCTTTGAGAAACTGCAGGCAGCTGTGGAGCAGCTGACCACACAACCACAGTGGGTCCCTGTCAACTGGGTTTACTGAGACACACAGAGGTCCAGGcaccccaccaccaccaccaccatcatcatcgtCTTCATCATCATCGGCACAGAACACAAGTTCACACTGAACGGACCCAGCAGTCACTATGCAAATGTACACTAGCCATCCAGTCACAACAGACATAAGGGAAGTgtacttatttattaatgtattttttattttctactgACTAAACTTAAATActtggagggaaaaaaacaaataggattttttttgaATGGCTTGTCATTTAACATAGCGAATGAGTATAAGCtgcattacagtatttaaagcAGGGGTCTGTTTTCTTGCTGTAATTTTAGTGTTAGAAATGTTGGTTTACAGTGCAGGGTTCATCTCGCATTTCTTCCTCCGTCATTCAGTTCAGTCACTACAGTACGTCAAGCAGCTTTGGACCTGATAAGAACTTTGTAAGCGTCATCGTATCCTcgtttcatttcagttaaagtCAAGGAACGCTAGGAGTAAGCCAATTTTATCTTTTACAATATCGcagtagcactttattttacagtcctgttatgtatgtactataataataactagGTTCTTACCCTGAACCTAACCTTATGGTCCGGAGTATACTTCGGTTTTGACGTGAAGTTCtccaaaaaatgtcattcacTCAGTCTCGTGTAGTTCCTAACCTGTCTGAATTGAACCAcatagtatggaaaaaaaaaatatagaagcAGTTTCTTTCACAGTCCTTTTACCAGTGTGCATACTACGttcttattataataattacaataactaggtAAACACTAGGTACTCGGCTCGAACCAAATAACTAATAAATTGCAACCAAAAATACTATGAGTCAAAGGGGACCAGAAAGCTTTTTGTTAcctacattcttcaaaatatcatctttttttattctcagcAGAAGAAACCAATgcattcaggtttggaacaattttAAGTAGAGTGAATGACATGATTTGAACTTTTGTGAACTCCTGCTTCGACGCTTCATCCCGTCCCATCTCTACTGAAATGAAGGGCCAGTTCAGTTTTGCCACcttttgaacagaaaaaaactagTGCGAAAAAGCTTGCCAGACAGATGCTGTGCCTGAGATGGAGTACTTCCCTTCTATCTAGTATGTAAAAAAGACGGCACACAAACAACCGTATTATGTTCCGATGCATAGTATTCAATGAACAgtaagggggaaaaaagcacCCGGATTTATGAATGGCAGAAAAGCAATGCAACAGACGTCAGTAGGTCACATGACAAATCCAGATTACGTGGCAAAATTTGTAGTCCGTGATGGAATCCGATACACGTTTTAGGTAATCAGGTTACTTTTAGGTTATTTTTGACCTAATTCGTTTATCGCATAATTCTGTTCgatgtaaaaaatgcaaaaagtaaatatgccataaattaatgtttagtGTACGTACAACCTTTCAAATATTATCCTTTTGAATATTTAGtgaaataaagttgttattgtCCAGTGTCTGCGTCAATCCtggtaaaatataattattagtcTCCTAACCCCCTCATAAAGTGCTTCAGTGcaggtgtttattttttttagaaaaaaaatccaggAAGATGTGGGAGCTGAGCATAAAAGTACTGCAAACATAGTATACTTCCAGTATAATGAAGTACACTCTGGGCTTTATGGCTGGTTCACACAGAACAAGTTTTTGTGTTCCATTGCGCTggtttttaatgactttttttttttttttttttttttatatccatgTGTCTCTACGTTTCAGTGTCTTACCTTGTGCAAGTTGAAAATGCTCAACCTTAGCAGATTTCTCAGTTCATCAGTACTGCATCTGAATCTTTTTGTGCGGCGCCTGtagtttttaaaagcaaaagccTGTTCTTTGTGAGCagcccctaaacctaaccttaactcaAGTCTGTTACCTTACATTTATACAGCCTCGTGTTAAGTGCAtgtactataaaataaagtgcatccaaTATCATTAGCTCATAATTGTATAATGATAAAACTGAAACTAAGTCTTTGTTGCTTGTATGTCTTAATATACAGAATTGGCTGTATTTTTTACACGggcacaaaatcactttcagaTGTGTCCCGATCACAAGCCACCTGCCCTCACCGATTCGTAACTTCATTAGCTGTATGTAGTGATGTACCTGTTTCTGGTGTCTTTTTCAAGGCTTTGTAACTGATTTTTATCCAGCTTGAGTATTTACTTGAAAATTCTATATTTTGCGATACAGAGAGTTGTATTTTCTGAAATTTAAACAGCTGTCTAATAAATTAAGCTTAATTTTGGATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163331 lncRNA downstream 195470 8237758 ~ 8239176 (-) True G110548
TU163329 lncRNA downstream 198853 8234908 ~ 8235793 (-) True G110546
TU163299 lncRNA downstream 350821 8083369 ~ 8083825 (-) False mkxb
TU163295 lncRNA downstream 351346 8082900 ~ 8083300 (-) False mkxb
XR_006252839.1 lncRNA downstream 441779 7988950 ~ 7992867 (-) True LOC122360778
TU163610 lncRNA upstream 95991 8547782 ~ 8551552 (-) True G110753
TU163615 lncRNA upstream 95991 8547782 ~ 8551552 (-) False G110753
TU163638 lncRNA upstream 138107 8589898 ~ 8590634 (-) True G110773
TU163682 lncRNA upstream 393734 8845525 ~ 8845993 (-) True G110807
TU163727 lncRNA upstream 548996 9000787 ~ 9001428 (-) True G110836
XM_043261729.1 mRNA downstream 71006 8341600 ~ 8363640 (-) True LOC122360896
XM_043261753.1 mRNA downstream 136165 8296026 ~ 8298481 (-) True LOC122360914
XM_043261660.1 mRNA downstream 178109 8239331 ~ 8256537 (-) True LOC122360799
XM_043260193.1 mRNA downstream 234307 8195101 ~ 8200339 (-) True adipoqb
XM_043260404.1 mRNA downstream 290692 8105226 ~ 8143954 (-) True mpp7b
XM_043261754.1 mRNA upstream 1032 8452823 ~ 8453220 (-) True LOC122360915
XM_043261756.1 mRNA upstream 3175 8454966 ~ 8466094 (-) True LOC122360918
XM_043261748.1 mRNA upstream 22307 8474098 ~ 8475848 (-) True uts2r3
XM_043261734.1 mRNA upstream 88811 8540602 ~ 8544277 (-) False LOC122360899
XM_043261733.1 mRNA upstream 88811 8540602 ~ 8544277 (-) True LOC122360899
TU163343 other downstream 117961 8312265 ~ 8316685 (-) True G110556
TU163340 other downstream 132401 8298789 ~ 8302245 (-) True G110554
TU163327 other downstream 218051 8216029 ~ 8216595 (-) True G110544
TU163302 other downstream 342293 8090651 ~ 8092353 (-) False mkxb
TU163187 other downstream 603929 7828820 ~ 7830717 (-) False LOC122360680
TU163623 other upstream 181559 8633350 ~ 8636222 (-) True wu:fj39g12
XR_006252934.1 other upstream 195623 8647414 ~ 8647555 (-) True LOC122361375
TU163829 other upstream 694139 9145930 ~ 9152183 (-) True G110911
TU163906 other upstream 819180 9270971 ~ 9272605 (-) True G110974
TU164366 other upstream 2295002 10746793 ~ 10748300 (-) False LOC122361037

Expression Profile