RNA id: XM_043261744.1


Basic Information

Item Value
RNA id XM_043261744.1
length 3660
RNA type mRNA
GC content 0.43
exon number 9
gene id opn9
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 8617631 ~ 8625519 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCTCTTGAATATTATGGAATAATCCATCTGAAGATGAAAACCTGATGGGTTTgacaaactttcattttgggagGAGCAACCCTATTAACGTCGGTACGCTTCGTGCATGTTTACTGTCAGTGGTTAAAGTCAAAGCATGTTTGAGGCTACAAATATTCAGCCTGTGATTATGTAATGTCTTTAGTTTTCTACGCTACTTTCATCAGTAATCATTGCGCAAGTTTGACTTTCTGTGCATTGTCTAAAATTGACAAATACCAAAAGGACCCAAATCTAGGAACACAAATTTCACAGACAGAGCAAGCTTTTTACTAGTTTGCTGTAAGTTAAAATTGGTTTCATGACGTGAAATTTGGTTGGAGCTGAATGAGCGAATCACGagaatacttttaatattttagaccTACCATAAGTAGCTGAGCAACTGCTTCTGAACAAGTACTGTTTAATCTATCATCTACCAACACTTTATTTAGATGGCCCACCAAGTAAAACTGCAGTTacgtcaacatattttgctaaCCCTAACCAAAAAGTATTTCTCTAAAGAAAGTTAATGACATGCAGTTGCCAAGTTACTTACAGATgatagaatgtctaaagtggactgtcaaaataGTGCTACcaaatattatttgattacCAGAAAAGGGTGAAATATTGTAACCTCTCACTGTTTAAATACAGTGTCCCTTTGAAACTGCTCTCATGCACTCATCTAAGCACTCTGTTGCTCCCTGACTCACTCTTTTAGTTCAATACATGGTCCATTTGTGGATCGGGGGTACTTTTCCATGAATAATGCACCCTGACATAGACATGCCATTATTTCACCTGATGGGCCTTTATGAAATATGTCTATCAATGCTATTGATGTGTGAGTCAGAGGGCCAGTGGACATATTTCAGCATTAATGCACCGCATTATCAAGGCACAGATCTACCAATGATGAACGTGGTGCTTtaggcgaaaaaaaaaaaaattcatatatttgACTATCATTCAAAAGTGCATACCATGACATGTTGTAAAATAATGCGAtcctaaaatgttgtttacaatGTCAGGTTCCAAAATATCATCTTATAACAAAATCAGTGTTGCATGGTTTAGCCTTGAAACAGGGTTGTGGGATTTGTGGCAGAGCTTGACattgtgcatgtgtttatgcATGCGCTTTAAAGCTGTTCAATTCTGTTGATAAGAATGAGGATTAGGAGACTTTAGTTGTTTAGTTCAGATAGCTCTTTCACATTTACTCTTCTGTATACAACGCCGACCTCCGCCCCTCTCTCTTAAACACAGGTTGTGTCACTGTGCTTTATTAACGAGCGCTGTATCTGCTAAACCCCTTGTTCATCtgactgaaataatatttacgGCTTCCATTGTCTATAAAAACTTCAGCTGTCGTCTAATCGCAGAGGTGACGTGTTAGGAGCGTAAAAAAATGAGGAAGGTGGACGCGGGAGTTCAAAAGGATGGGAGGGTTATTGTGATGGTCCTCTGGCAGATTGACCACAGCAGAATTGATTCACTCCTCCCGTATAAACAGAGAGCAACAGGAACAAAAGAGGCTTAAGACTGAAAAGCAAGCATTTCACTTTGAGATTAAGAGACAGTGGCAGGCTGAAAAAGAcggagagaaaaacacagaagagGTGGACTGACAGAGGAAGTACAGTTAATGTCTAAGAGAGTAAATGGCTCGTGGATGGGGTCTATCTCTGTCCCGTCCTCCATCCCTCATGCCTTCCGCTCTCAGCTCTCTTCGACCGCTGACCTCAGCATAGCCATCTTTCTCATCGTCACAGGTGTGGTGTCTGTGGTCGGGAATGGGCTGGTGTTGTTGGTTTACGGACAGAGGAGGAAGAAGCTCAGAGCTCACGAGCTGATGACCATCAATCTGGCAGTTTGTGATTTTGGCTACAGCCTGCTGGGGGCGCCCTGTGTCATCATCTCAAGTCTGTCGCATGCATGGATTTTTGGGGACACAGGATGTATGTGGTATGGGTTTCAGGGCTTTGTTTTTGGCATCGGGTCTCTCATTACTACCTGCCTTATCTCCCTCGACCGCTGCTTCAAGATCTGTAGCTTTCGATATGGTCAGTGGATTGAGAGAAAACACGCCTCTCTGTCCGTGGCTCTGGTGTGGATCTATACGTTATTCTGGGCCACACTACCTGTGTTTGGCTTTGGTAGTTACAGCCCGGAACCCTACGGAACTAGCTGCACCATAAACTGGTGGAAAATGAAGTCTTCACTCAAGGATAGAGTCTACATTTACTTGATTCTGTCACTCTGCTTTGGAGTTCCCACCTTCACTATCATCACTTCATACCTCGCTATAATCATCAAGGTGTATCGGTCTGGTCGCGTATTGGCTTCAATCCCTTCATCCAATGTCACTCACAACAGCAAAGATCTCCGGCTGACAAAGATAGCAGCAGTGGTGTGTTCCTCATTTCTGATAGCCTGGACTCCCTATGCGATCGTTTCTCTCTACTCCGCTTTGACTGCCAGAGAGGAGCACGCTGGAGAAGACGGAGGAAGCGCTCTCGCGGGTGGAATGCCAGCAGCAGGGGTCGGCCACGGCGGAGGGTTGTCTGATGTCTTTGGTTTTCCCTTCCTCATTAACTGGACCTCTCCAGAACACTTTGGGGATGCTTTTGGCTCCTGGAGGAATATGACTTCTGATCATTCCCATCATTCAGCAGGGCATCATGGGTCAAGTTCGACTGTGGGTTCTGAACATGGAGGGATGAATGGACATCTGTCACATCTTGTGTCCATCCTGAAGCCAGAGGTCTCGCTCATTCCAGCTATTCTGGCCAAATCCCACTGCATGATAAACCCCTTCATCTACCAGATCATGAACCGCGACTTCAGGGAGGATGTCTATGATCTCCTGTGTCTGAGAGGAAAAgatggagagaggaggagaacaAGGAGCACAGACGGCAGTGATTCCGAtgGGTATCGTGGAAGCGTCACACTCTCTTATATCCAAAGCTGGAGGAGAAGAAGCACAGCTACCAGTCAGTCATCTGGGGAGCGTGTGAAGAAGGATTCCTCACGGAAGAGTAGAGGTAGTAGAGGGAGCCGAGGGAGCACAGGTCAGGGAGGGTCCTGTCAGGACAGCACAGCAGTCGGGTGGGCAACCTTGGATACTACAACCTTAGACACTCAGGCCAActtagaaagagagagagggaaggaggTGGAAAGAGAGGCAAACAAAGACCTTCGAGAACCCACTTCTAACAGCCAGTTGACGGGTGAGGAGTGATGCTTGCTGTCTAAAGAGACAGCTACAGCATAGTTCACAATGCAGTTAGTTAGCTCAAAATATCTGTTGGTTTAGGTAAAaactgtttggttttttttccgCTTGTGTCATCCAGTGTGATTTTGCACATATCCAGGTGCTTTGACACATGAAGCTCTAGTTAGGATTTTCATATAGGTTTTTCCTTTGTGTGTTAGTAACTGGATcctgtatatgtatttatttattaatatatatatatatagtgtatcaaaatatttaatgtctttACTTATTGTACTTATGTTTTTGCATATGTAGAGAGCACCATCCAATCCAAAACTactttttctgaataaatgtgaaatgtaaataaagtttaCAACAACGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163638 lncRNA downstream 26997 8589898 ~ 8590634 (-) True G110773
TU163610 lncRNA downstream 66079 8547782 ~ 8551552 (-) True G110753
TU163615 lncRNA downstream 66079 8547782 ~ 8551552 (-) False G110753
TU163331 lncRNA downstream 378455 8237758 ~ 8239176 (-) True G110548
TU163329 lncRNA downstream 381838 8234908 ~ 8235793 (-) True G110546
TU163682 lncRNA upstream 220006 8845525 ~ 8845993 (-) True G110807
TU163727 lncRNA upstream 375268 9000787 ~ 9001428 (-) True G110836
TU163733 lncRNA upstream 379019 9004538 ~ 9005206 (-) True G110842
TU163741 lncRNA upstream 381778 9007297 ~ 9007532 (-) True G110849
TU163744 lncRNA upstream 405616 9031135 ~ 9031449 (-) True G110852
XM_043261731.1 mRNA downstream 390 8600708 ~ 8617241 (-) True iffo1b
XM_043261732.1 mRNA downstream 391 8600708 ~ 8617240 (-) False iffo1b
XM_043261750.1 mRNA downstream 17502 8592235 ~ 8600129 (-) True si:dkey-260g12.1
XM_043261747.1 mRNA downstream 37362 8574027 ~ 8580269 (-) True tnfrsf1a
XM_043261728.1 mRNA downstream 46158 8558336 ~ 8571473 (-) True plekhg6
XM_043261749.1 mRNA upstream 98 8625617 ~ 8630178 (-) True gapdh
XM_043260323.1 mRNA upstream 8521 8634040 ~ 8636015 (-) False wu:fj39g12
XM_043260322.1 mRNA upstream 8521 8634040 ~ 8636012 (-) False wu:fj39g12
XM_043261279.1 mRNA upstream 17639 8643158 ~ 8649731 (-) True nop2
XM_043261281.1 mRNA upstream 26437 8651956 ~ 8653563 (-) True emg1
TU163343 other downstream 300946 8312265 ~ 8316685 (-) True G110556
TU163340 other downstream 315386 8298789 ~ 8302245 (-) True G110554
TU163327 other downstream 401036 8216029 ~ 8216595 (-) True G110544
TU163302 other downstream 525278 8090651 ~ 8092353 (-) False mkxb
TU163187 other downstream 786914 7828820 ~ 7830717 (-) False LOC122360680
TU163623 other upstream 7831 8633350 ~ 8636222 (-) True wu:fj39g12
XR_006252934.1 other upstream 21895 8647414 ~ 8647555 (-) True LOC122361375
TU163829 other upstream 520411 9145930 ~ 9152183 (-) True G110911
TU163906 other upstream 645452 9270971 ~ 9272605 (-) True G110974
TU164366 other upstream 2121274 10746793 ~ 10748300 (-) False LOC122361037

Expression Profile