RNA id: XM_043261747.1


Basic Information

Item Value
RNA id XM_043261747.1
length 1579
RNA type mRNA
GC content 0.45
exon number 10
gene id tnfrsf1a
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 8574027 ~ 8580269 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGGGGATGACAGAACGCTTCTGGGAGAAGAAAAGACGATGTTGGAACGCCATGAGTAGAGTGAGTTTGGTGAAGTGAGAAATACTGCTTTAGCGCCGTGTAGCGGCCATGAGGGACCGTCAGatgtttgcttgtgttttgCTGGCTCTAATCAGCCAGTCATGTATAATATCAAATTTCCCAGTTAGTGGAAGTCCGTCTGTGAAAGGAAACTGTCCTGATAATGAATACTGGAATAAGAATGGATTCTGCTGTGATAAGTGTCATCCAGGCTTTAAATTGAAAGAGAAATGTCCTGAACCAAATAAAAGGTCCAAATGTGTAAAATGCGAGGCTGAAACCTACCTAGAAAACTCAAACCACAATGAAAACTGCTTCAGTTGCACGAAGTGCAACAAAgTCCATTCCAAAGAGATATCACCATGTACATACAAAAGCAACAGGGTGTGTGGGTGTGAGCCTGAATACTACTACAAGAAACTAGGTGACTTGGCATGGGAGTGCTCTCGCTGTAAGAAATGTGGATCCGGGCAGCTGGAAGCTGCACCATGTGCTGGGGAACAGAATAGAAAGTGCCAATGCAAAGAAAACCATTATGCTGTCAAGGGAACGAACGTCTGTGAGCCGTGTGTTGAATGTCAGGAGGAGTGTCCACATTTGTGCAAATCCAGCACGCCTCCTACCCCTTTTATGTCTATCCACCCAACTAGTCCTTCAGATTTAATGCCCCAAATACTGGTCCCTGTATTTGCGTGCATCACAGTTCTATCGCTGGGAGTGTTCATGTTATACGAGGGCATCAGactttggaagaaaaaaaagaggcatgCTTTGTCATCGCAGAAATCATCGCCTGCTTCTGACGATCAGACATTTATTATCACAGTGGGAGCAGACGCGGTCCACAACGAGAGCGTTCCTCTCACAAACCAACAGTGTGAAACAGAACAAAGCGGAAAACTCCCAGACTGCGTTCCAAGGGAGATCAAAATTCACGAGTTCTTCTACTTCGTGCTGGACGAGGTGCCCATCGGGCGATTCAAAGAGCTTGTACGACGGCTTGGTGTTTCTGAGCAGAACATTGACAGGGCCGACCAAGACCACAGGAACAGCAAAGATGCCCACTACCAGATGCTGAAGGTTTGGAGCGACAGCGGGAGCGGGGGAGGGAACAACGTTTTGCCCTGTCACCGCATCCAGATGTTCGTAGACACCCTGAAGGACATGTATTTGGTGAACTGTGCAGACAACATCGAGAACAGGTTTCTTTCACAGGACACAAGCGCTTCACACTGAGGCCAatagaagagaaagaagaaaagggCATTAATAGAGAACCTTCCGACGATTTCCATTGGATTCCTTTGAGAGTGGAAGCGCGTCTGCAGCTGTTTATGTCCTATTTCCAGTTGTTTGAAGGTTTCACACTAAATTTTTTCTATCTTCTGTgttatgtgtttatatgcagGCTTTTCTTGAATGTTTCTTGAATGAAGGTTGTGGAGTGGTTGGGGTTCTGGGTTGTAATTTTTCagatatatataatcatgtatATTCTGTTCAAATTCTCCTTATCATA

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0042742 defense response to bacterium biological_process

KEGG:

id description
K03158 TNFRSF1A, TNFR1, CD120a; tumor necrosis factor receptor superfamily member 1A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163610 lncRNA downstream 22475 8547782 ~ 8551552 (-) True G110753
TU163615 lncRNA downstream 22475 8547782 ~ 8551552 (-) False G110753
TU163331 lncRNA downstream 334851 8237758 ~ 8239176 (-) True G110548
TU163329 lncRNA downstream 338234 8234908 ~ 8235793 (-) True G110546
TU163299 lncRNA downstream 490202 8083369 ~ 8083825 (-) False mkxb
TU163638 lncRNA upstream 9629 8589898 ~ 8590634 (-) True G110773
TU163682 lncRNA upstream 265256 8845525 ~ 8845993 (-) True G110807
TU163727 lncRNA upstream 420518 9000787 ~ 9001428 (-) True G110836
TU163733 lncRNA upstream 424269 9004538 ~ 9005206 (-) True G110842
TU163741 lncRNA upstream 427028 9007297 ~ 9007532 (-) True G110849
XM_043261728.1 mRNA downstream 2554 8558336 ~ 8571473 (-) True plekhg6
XM_043261734.1 mRNA downstream 29750 8540602 ~ 8544277 (-) False LOC122360899
XM_043261733.1 mRNA downstream 29750 8540602 ~ 8544277 (-) True LOC122360899
XM_043261748.1 mRNA downstream 98179 8474098 ~ 8475848 (-) True uts2r3
XM_043261756.1 mRNA downstream 107933 8454966 ~ 8466094 (-) True LOC122360918
XM_043261750.1 mRNA upstream 11966 8592235 ~ 8600129 (-) True si:dkey-260g12.1
XM_043261731.1 mRNA upstream 20439 8600708 ~ 8617241 (-) True iffo1b
XM_043261732.1 mRNA upstream 20439 8600708 ~ 8617240 (-) False iffo1b
XM_043261743.1 mRNA upstream 37362 8617631 ~ 8625519 (-) False opn9
XM_043261744.1 mRNA upstream 37362 8617631 ~ 8625519 (-) True opn9
TU163343 other downstream 257342 8312265 ~ 8316685 (-) True G110556
TU163340 other downstream 271782 8298789 ~ 8302245 (-) True G110554
TU163327 other downstream 357432 8216029 ~ 8216595 (-) True G110544
TU163302 other downstream 481674 8090651 ~ 8092353 (-) False mkxb
TU163187 other downstream 743310 7828820 ~ 7830717 (-) False LOC122360680
TU163623 other upstream 53081 8633350 ~ 8636222 (-) True wu:fj39g12
XR_006252934.1 other upstream 67145 8647414 ~ 8647555 (-) True LOC122361375
TU163829 other upstream 565661 9145930 ~ 9152183 (-) True G110911
TU163906 other upstream 690702 9270971 ~ 9272605 (-) True G110974
TU164366 other upstream 2166524 10746793 ~ 10748300 (-) False LOC122361037

Expression Profile