RNA id: XM_043261750.1


Basic Information

Item Value
RNA id XM_043261750.1
length 2029
RNA type mRNA
GC content 0.45
exon number 9
gene id si:dkey-260g12.1
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 8592235 ~ 8600129 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tcttcACAACAGCGAGCAGGTGAAGGacagtgtgagaaagagagggaggggaATGACAGGAAGACACAGCAGGTGAGGAAACAATGAGATGAAATGATCAGAACTGAACACAGACTGGCAGAAGACACAGAAATAGAGGCTCAAAGCATTCGGTGACATTTTGGATTAGACTGATAGTAAGATGCTTGTGACAGTGTTATCTGTAGCCTTGGTGATGCTGAGAGGTCACCTGATTTATGGGCTCCCTAtgGacggaaaaaagagaaattcgAGGGCCCTTTCAGAAGAGCTGTGTAATCCAGGATATTTCAAGTCAGGCAATTCGTGTGTTCAGTGCAAGCCCGGTTTCTACACCagtgagaaaaacagagagaattTTTGCCACCGCTGCTTCCAGAACTGCATATCTGAATTCAACATGGAGGTGGAGAAGAATTGCACGAGAACATCCGATGTAGTGTGTCGCTGTCGAGAGGGTTacgtgtgtgtgcccgatgaacACACACGCCTATGTGACAGCTGCGCTCCTGTCTCCATCACCATCCCATTCTCCACCTCTGCTGATGTCCCATCGTCCACTGCATCCACCACTACATCTACAGAGACAGCTGAGATTAAACTGGCTGGCAATAGGGTTACCGTGTGGGGTTTATGTGGAATAAGTTCTGTGATGCTATCCTTTATCATCCTTCTGCTGTTCCTCCGGTTCTGCaggaagaaagagaaggaatgttttaaacattTTGTCAGGCAGTGCTCGCTGGGTAATATAGAGaTGGACAGCGAGACTGCGCCTCCTACCAGCCAACCAGATAAGCAGCCCCAGGGCGTGCTGTCACATGGCAGCACGCCTACCAATCACAACACAGACTGCTCGtttcatcagccaatcagctcAGAGCACACTGTGCCTCCGGCTGGCAATTTAGGTCCTCTCCACATCTATGGTCCCCAGACGGTTTTTGTTAGTTTGCTCAATCAGTTTGGATGCGATGGCGGCGAGAAAAAACCACACGAGCTCCAAGAAGAATCGCTAAACAACATCAACGTGCCCTACCCTCGGTCTCCCCCCGTCCATCTGTCCGAGGAGGAACGCAGCGGTGATAACGATTTCATCTTCTTCCCATCTCAGGAGCAAGGGAAAGAGTGCCACATATCTAAAGAAGAGGCGCTGTGAGGGATAACGGGCCGCTTGTGTCCGTCTTCCTCCGTACTGCTCGAGAGTACCCAGTATTAAAACTCTAACCCTGGCGGGGGATTTCATCTCGAGAGCAACAGGCTGCGTTAGGGGAAGGCCTGGGTGTGTGACTAACAGTGAGGACGACATAACTGTTGCGTATGAGCTTGACAGTTGGTGCCAGCTTTGCAATATCACCCATAAAGTCGTTTTGTGCGTAACCACCGAATCTGAACCATCAGAACGGGAGAGGGATGCTGATGTTGACTGTCGATGCCAAAGGCTTTCACCTCTTACCACGGCTCAGTGACTCTCTGGAAGTGTttgaaagtgtttaaaacacTCAAGAAGACCAAAGATTTAAGCGccttgctgtatttatttgatgtaaatagTTATTAAACTCATTGTAGTTGCAATACGTGGTATAATTTCCTATCTATCGTCTATCTAATCTTCCGGGACATTTCGAGTctagagtatttttttatttatacttgtTATTAATTCTATTGcagatattaaaaacacaaagaagtTTTTTGTTCTCACACAGTTTATCGGTTAAGTCCCTGGTTAATGCTGTCAGCgttcttcctcttttctttgGCTTTTATGCGACTCTCATGATGGATTGTGCCATCAAAAAAGCCCTGACATTTTGATGGTGGTCTGGAAATGTCAACTTTTCTTCATTTAGAAGTAAATAAGCACAGCACAGGAACAGGCAGTATAGCTGTTGCGTGtcattatgtattatgttttacatttgctgtaatgcacttttttttttttacttgatatTAATtgtaaagtgcaataaaatcaataaagatttatttttggtaCGTT

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04612 Antigen processing and presentation
ko04660 T cell receptor signaling pathway
ko04062 Chemokine signaling pathway
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163638 lncRNA downstream 1601 8589898 ~ 8590634 (-) True G110773
TU163610 lncRNA downstream 40683 8547782 ~ 8551552 (-) True G110753
TU163615 lncRNA downstream 40683 8547782 ~ 8551552 (-) False G110753
TU163331 lncRNA downstream 353059 8237758 ~ 8239176 (-) True G110548
TU163329 lncRNA downstream 356442 8234908 ~ 8235793 (-) True G110546
TU163682 lncRNA upstream 245396 8845525 ~ 8845993 (-) True G110807
TU163727 lncRNA upstream 400658 9000787 ~ 9001428 (-) True G110836
TU163733 lncRNA upstream 404409 9004538 ~ 9005206 (-) True G110842
TU163741 lncRNA upstream 407168 9007297 ~ 9007532 (-) True G110849
TU163744 lncRNA upstream 431006 9031135 ~ 9031449 (-) True G110852
XM_043261747.1 mRNA downstream 11966 8574027 ~ 8580269 (-) True tnfrsf1a
XM_043261728.1 mRNA downstream 20762 8558336 ~ 8571473 (-) True plekhg6
XM_043261734.1 mRNA downstream 47958 8540602 ~ 8544277 (-) False LOC122360899
XM_043261733.1 mRNA downstream 47958 8540602 ~ 8544277 (-) True LOC122360899
XM_043261748.1 mRNA downstream 116387 8474098 ~ 8475848 (-) True uts2r3
XM_043261731.1 mRNA upstream 579 8600708 ~ 8617241 (-) True iffo1b
XM_043261732.1 mRNA upstream 579 8600708 ~ 8617240 (-) False iffo1b
XM_043261743.1 mRNA upstream 17502 8617631 ~ 8625519 (-) False opn9
XM_043261744.1 mRNA upstream 17502 8617631 ~ 8625519 (-) True opn9
XM_043261749.1 mRNA upstream 25488 8625617 ~ 8630178 (-) True gapdh
TU163343 other downstream 275550 8312265 ~ 8316685 (-) True G110556
TU163340 other downstream 289990 8298789 ~ 8302245 (-) True G110554
TU163327 other downstream 375640 8216029 ~ 8216595 (-) True G110544
TU163302 other downstream 499882 8090651 ~ 8092353 (-) False mkxb
TU163187 other downstream 761518 7828820 ~ 7830717 (-) False LOC122360680
TU163623 other upstream 33221 8633350 ~ 8636222 (-) True wu:fj39g12
XR_006252934.1 other upstream 47285 8647414 ~ 8647555 (-) True LOC122361375
TU163829 other upstream 545801 9145930 ~ 9152183 (-) True G110911
TU163906 other upstream 670842 9270971 ~ 9272605 (-) True G110974
TU164366 other upstream 2146664 10746793 ~ 10748300 (-) False LOC122361037

Expression Profile