RNA id: XM_043261757.1


Basic Information

Item Value
RNA id XM_043261757.1
length 2658
RNA type mRNA
GC content 0.44
exon number 5
gene id jazf1b
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 11687295 ~ 11704828 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ccgctgtctgcctgtctatctGACGgtgcgcgcgtgcgtgcgtgcgtgcgcgcgaTCTCCTTTCCGCTCGCGCCGTGCTGCTGCTCCTCAATGTAGCAAAGACCATGACAGGCATCGCCGCCGCCTCCTTCTTCTCCAACATTTGCCAGTTCGGGGGCTGCGGACTGCACTTCGAGTCGCTGGCCGAGCTCATCGTGCACATCGAGGATAATCACATCGATACAGACCCCCGTGTGTTGGAGAAACAGGAACTGCAGCAGCCCACGTATGTCGCCCTCAGCTACATTAACAGGTTTATGACAGATGCAGCACGGCGGGAGCATGAGTCTCTGAAGAAGAAAGTTCAGCCAAAGCTGTCGCTCTCGCTGACCGGCGGCCTTTCACGCAACAGCGTGGCCACGCCCCCTCGGCACAACAGCGGCAACCTGACTCCGCCCGTGACTCCGCCCATCACGCCGTCGTCTTCATTCAGGAGCAGCACCCCCACAGGCAGCGAGTATGATGAGGAGGAAGCAGAATACGAAGAGTCTGACAGTGACGAGTCGTGGACCACCGAAAGTGCCATTAGCTCTGAATACATCCTCAGTTCCATGTGCATGAACGGCGGTGACGAGAAACCGTTCGCATGTCCCGTGCCTGGCTGCAAAAAGAGATACAAGAATGTGAATGGTATCAAATACCACGCCAAGAACGGCCACCGCACTCAGATCCGCGTTCGGAAGCCCTTCAAGTGCCGGTGTGGTAAAAGCTACAAAAGCTCTCAGGGGCTTCGACACCACACCATCAACTTCCACCCGCCCGTCTCTGCCGACATCATCCGCAAGATGCAGCAGTAGAGAGTGCCAAGATCCTcctcgacacacacacacacacacacatgtatatacagtacaaacacCTACACACCCATCTCACCAGCAGCCATGGCTGTCCATTAACTCTGACTTTGACCCGTCTTCTCCTCAGTTTTTTTTGGAGTACatccaaaaaatatttgtctGGAGGACAGTTTGTCTTTCTCTATTTTACTCTTTCAGGAGTAAGACTTCACCTCCCTTTTCATTCCACTCCTCACGAGGAGGAAACTTTTAATCTTTTTGTATTCCTCTTCCTCAAGGAAGACTCCCTGTATCATTCCGTTCGTTTCAACCATCTTATCAAAAcactacatttttaattgcatgctttaattcagttcttttttttttttattgttatttcctTCGCTTATTTGTATCTTATTAGAGTTCAcggttttgtatttttgcacattcgcttaatcattttttttttttttttttttcctcgtctttatttttttgatgctaGGTGCTTATTGTAAGACTGACGGTATGTTTGGAAAGGAGAGAATCGTGGCCAGCCTCACGCGAGTGGAAAACGAAAGATAGGAAAGGCTTGAAAAGTCCGAATGTTTATCTACCCTGTATAAGCAACATTCATAGCTACAGATTgtgtatataactatatattctATAAGTTTCATAGTCAGATTTAAATTCTATACTTTATTCctaagttttattttgtatattttcaacCGAGCTTCGGAGACGACGTTATCGATTGGATTATGGATGTACAGTTTTCGGTAGTGCTTTCACCCTTTCTGTTAATCTCAGAAAAGCTTTGAGTTATAGCACCAAATGACTCTCAGGTGACAAATCGCCAGCATTTCAAACACACAATCCTGATCTGATAGTATTTTTGAGTAGGCTGTTACACTCTTCCCAGGTCTGCTGTGGCCGGACCGTTCTGGAGCGTCGTAGAACTCCACAGCGATCTGGAGAAGAACCTAAAGCACTTTGTAGTGACCAGTTGCCAACCTGTTTAGGGCATTTTGTATTGCCAACAAGCTACGAAATTCCAAGGACTAATATGGCGTATTGGAGGTCTCTCTTTCTGAggttcttttattattattttttctagcTAAGGGAATTCATTCTTTCGCTATACCTCCAGTGTGCTTGTTAGATGTGAGATTATTGAAACTGGTTGCCTTGAATTGTGGTACACCACAGCATTCCAGTACAGTATATGTGTAGCCAAGTGATTCAGATTGTGTATTCATCCTGATTCTGGCTCGTCTCTGGCGTGTCCGGTTGACTTTTATACCCCTAACCTGTCACTGGGACGATATAGAGTCACAACCCAAAGATATTCAAGTGTGGACTCATACCTTGAAGCAGAAAGGTACTCGATTTGATTTGCTTTTGGACTCGTgggtggtaaaaaaaaatgaaaagtcgcTAGATCTTCCGGAGATGCCGGCCAGGTCAGGGCCTGCCAATCACTCATTATGACATTACTGCATGGACATTAATGTTGTTGGAATTGCAGTATCGGTTTAGATGCAACATTGTAACAGTATTACACTGCCAGTACAGAGGGAAGTATTTGATATATTGTGTACTTAATGTATTGTCTCGATGTGAGtgctttaaattatattttcttaagTTTCTGGACAACAATGTTCCTACATGTAATGAAGTCAGACACCAGGGGTTGTTTTGGAACTGGTGACATTTTCtgcaacaaaactgaaaaaaaaaaaaaaaaaaagctgcttcataaatgtaaacctggttacattttaaatattaaaatggcctctgatatgttttaaaaaaaaaa

Function

GO:

id name namespace
GO:0007368 determination of left/right symmetry biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K19495 JAZF1; juxtaposed with another zinc finger protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164699 lncRNA downstream 21021 11662918 ~ 11666274 (-) True G111559
TU164700 lncRNA downstream 21021 11662918 ~ 11666274 (-) False G111559
XR_006252859.1 lncRNA downstream 117558 11562878 ~ 11569737 (-) True LOC122361126
TU164642 lncRNA downstream 142963 11543916 ~ 11544332 (-) True G111516
TU164633 lncRNA downstream 198468 11487682 ~ 11488827 (-) True G111508
TU164770 lncRNA upstream 69091 11773919 ~ 11774181 (-) True G111623
TU164772 lncRNA upstream 75959 11780787 ~ 11781172 (-) True G111625
XR_006252803.1 lncRNA upstream 78867 11783695 ~ 11784334 (-) True LOC122360397
TU164789 lncRNA upstream 113631 11818459 ~ 11819778 (-) True G111639
TU164803 lncRNA upstream 160852 11865680 ~ 11867315 (-) False LOC122361049
XM_043261454.1 mRNA downstream 25063 11653213 ~ 11662232 (-) True hibadhb
XM_043261455.1 mRNA downstream 38426 11646850 ~ 11648869 (-) True hoxa13b
XM_043260441.1 mRNA downstream 45786 11639005 ~ 11641509 (-) False hoxa11b
XM_043260440.1 mRNA downstream 45786 11639005 ~ 11641509 (-) True hoxa11b
XM_043261173.1 mRNA downstream 50692 11633490 ~ 11636603 (-) True hoxa10b
XM_043260991.1 mRNA upstream 70146 11774974 ~ 11779980 (-) True cpvl
XM_043260955.1 mRNA upstream 115959 11820787 ~ 11823551 (-) True fkbp14
XM_043260860.1 mRNA upstream 135073 11839901 ~ 11854994 (-) False colq
XM_043260859.1 mRNA upstream 135073 11839901 ~ 11854816 (-) True colq
XM_043260858.1 mRNA upstream 150193 11855021 ~ 11865183 (-) True hacl1
TU164609 other downstream 275518 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 400863 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 804084 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 820867 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 938995 10746793 ~ 10748300 (-) False LOC122361037
TU165859 other upstream 1949232 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 2529726 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 3204497 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 3763652 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 3763652 15468480 ~ 15496375 (-) False rps19

Expression Profile