RNA id: XM_043261772.1



Basic Information


Item Value
RNA id XM_043261772.1
length 2041
RNA type mRNA
GC content 0.37
exon number 3
gene id s100t
representative True

Chromosome Information


Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 14896221 ~ 14899047 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TGGCATATGTGTATGGACACCTTTTGCTTAATGATGAATTAACACCTGTGCAGCAGTATCAGGTGTGACAGGACCACTTGTAGTCAGATGCtcacccaacacacacacacacacacctgagagatTATCAGCACCTCTAAAGACCCTTGGGTTGTTAGTAACTACATGTGTACCATGTAACCTTGTTTGGCCTGTAACATAATCAGTCCTCAGGCACCTGACCCCATTTCATCTTATGGCTTATGTGCCATTATGCTTATAATTGTAGAAAAGTGCATTAAGAAATGAACTGCAAATATATAgacttatatacttatatataaatgtgttggatagatatagatagaatTACACCATCAAGAACCTTGACCAATCTCTAAGAGTATATTGTCATCTCATTGTATATTCTTTAtcacataatgtaaataatacagaaattagtataccttttaaatatatatttatatgtataaatcatattttaaagcataactGCTGGTAAAGGAGCCTTTTTAGAGCTCAGCCGATGTTTATAGCGATGTTTGTGTGTAAGTCATCAATTACTGAGGATAAATCATTTAGTTCGGGGTGCTGACCTATCACGTCTCTAAAAGTTTAATGTGACAAGCACCAGTACATATAAATAACCTTTAGGATCAAACATATCTATTTACTCAAAAGCTCTTCTTTCAGGTAAGTCCACGTCTTCAGAGcatgtttatatacacaaatgtcACGCTGTAGCTTGAAAACATGACCAATGATATTTATTGACACAATGCAGTTcattgtaaatgatttttttaaagaaaattaatacaTTCAAATTTTGTTGAGATACACACAttatgcataaacacacattagtaaacattttaacaaccacaatgtttatatatatatatatatatatatatatatatatatattcatgattCACAAACTTAGCTAACAGAGTGTtgatcaataaaacaaaacatcaattatgtgtattgttttcattttctcaagTTACCCTCTAACGCAGAGaactttctctcttttaattACGACGATCATCATCGCATTTACACctttatataacacttttagTATTTTTCCTTACATTGTGAATGTGTAAACAGAGAGGGCAAGAGGTGGGAAAAAGGTAGGCAGAGACAAATGATGGATGGAAGAAGGGAGGAGTGTAAGGTATGATGGGAGGAGGACCATGTAGGTATATAAGATGCTGCTCATCGTCTCCCGTCTTCACCAGCATTCATCTCTCCTCAAGGAACAGAAGAGCAACAACCTTCTAACAACAAGAATGTCTAATATTCTCAACTCAGAGAATGCCTCCACTCTGGAGAGCGCCATGCAGCTGATGATCCAGACATTCCACAAGTACTCTGGAAACGAGGGAGACAAATATACTCTTAGCAGGCAGGAACTCAAAGAGATGCTAACGCAGGAACTGGGCAACTACCTTGGGAATGCACAGGATAAGGATGCCGTAGATAAAGTTATGGGAGACCTGGATTCAAACAACGACGGTGAGGTGGACTTCACGGAGTTCGTCATCCTCGTTGGTGCCCTCACTGTCGCCTGCAACGACTTCTTCCTCGAGTATCATGAAAAGGATGGAAAGAAGCCTGAAAAGAGTGATTAGAGTTGCATTTCTCTGAACAAAAGCCAACACATGACCAGCGAATGATGATGAGGGGGAAATGAGGGGAGAAGgggaatatgtgtgtgtgtgtgtgtgtgtatgaatctTCCTTACTGATATGATATTTTACTGATACTTTTTACTGATAAGTTTCACATCATCTCCGCATCCACATCCTGCATGCATGCAATCCTCGGTACACAAAATTTTTTCACGAGGCACATGTTTCCAGACCCCTGGACCTGTTAGAAGCATTGGGAATGAGATTGTGACATGGTCTTTGTTGAATATGTGAATATGtgtttcttcctttcttttgttttttaacaattggagttgtttatttgaaaataatctCTCCATATAACAATAAAGGGcagatttgaaattaaa

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU166909 lncRNA downstream 3826 14892040 ~ 14892395 (-) True G113034
TU166370 lncRNA downstream 180730 14715216 ~ 14715491 (-) True G112686
TU166328 lncRNA downstream 242071 14591362 ~ 14654150 (-) True G112659
XR_006252747.1 lncRNA downstream 257889 14633214 ~ 14638332 (-) True LOC122359963
TU166357 lncRNA downstream 258828 14635563 ~ 14637393 (-) False LOC122359963
TU166910 lncRNA upstream 135 14899182 ~ 14904907 (-) True si:ch211-105c13.3
TU166911 lncRNA upstream 135 14899182 ~ 14904907 (-) False si:ch211-105c13.3
TU166915 lncRNA upstream 47548 14946595 ~ 14947384 (-) True G113039
TU166926 lncRNA upstream 71558 14970605 ~ 14988931 (-) False si:dkey-246i14.3
TU166958 lncRNA upstream 211786 15110833 ~ 15197354 (-) False G113073
XM_043261859.1 mRNA downstream 149596 14727085 ~ 14746625 (-) True LOC122360979
XM_043260412.1 mRNA downstream 176641 14717064 ~ 14719580 (-) True LOC122360089
XM_043260202.1 mRNA downstream 181255 14701898 ~ 14714966 (-) True tuft1a
XM_043260200.1 mRNA downstream 199133 14687731 ~ 14697088 (-) False si:dkey-92i15.4
XM_043260199.1 mRNA downstream 201412 14687731 ~ 14694809 (-) True si:dkey-92i15.4
XM_043261773.1 mRNA upstream 150 14899197 ~ 14900547 (-) False si:ch211-105c13.3
XM_043260128.1 mRNA upstream 9573 14908620 ~ 14913646 (-) True LOC122359907
XM_043261042.1 mRNA upstream 14901 14913948 ~ 14924517 (-) False pbxip1b
XM_043261039.1 mRNA upstream 14901 14913948 ~ 14924517 (-) False pbxip1b
XM_043261041.1 mRNA upstream 14901 14913948 ~ 14924517 (-) False pbxip1b
TU166030 other downstream 594602 14234554 ~ 14301619 (-) True G112478
TU165859 other downstream 1212312 13654060 ~ 13683909 (-) True zgc:92606
TU164609 other downstream 3484444 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 3609789 11270664 ~ 11286432 (-) False G111450
TU164397 other downstream 4029793 10861951 ~ 10866428 (-) False LOC122360812
XR_006252733.1 other upstream 10278 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 569433 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 569433 15468480 ~ 15496375 (-) False rps19
TU167051 other upstream 569433 15468480 ~ 15495722 (-) False rps19
TU167049 other upstream 593774 15492821 ~ 15496375 (-) True rps19

Expression Profile


XM_043261772.1 Expression in all Baseline Samples

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XM_043261772.1 Expression in each Bioproject

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XM_043261772.1 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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