RNA id: XM_043261777.1


Basic Information

Item Value
RNA id XM_043261777.1
length 3576
RNA type mRNA
GC content 0.43
exon number 5
gene id macc1
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 12007457 ~ 12012944 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGCCGTCCGATGCAACTGTTTGACTGTTTGGTACTACGCATCCCAGCGTGCACTGCTCCACTTTTCAAGCAGACCGAGGCACACAGAAGTGTAAGGTGTACAGTTGGTGACACTCCCCGCCGATTAAAAAGTTCGCAGAAGTACTGCGTGGGGAAACTACCATGCTCCAGCTTTGACATTAGAGAAAAGATTCTTGGATATCCAAAATGGCAGCTGCAAAAGTAAAGTCAAACAGTCGTGCAGGGAATCTGCTTCGGAGTAGATCAGAGGGGACTCTAATAGATGTAGATGAGAATGTGAccattaacaacaacaaccttCATGGGGGCTATGGTTATGACATTGGAAAAACCTCAGAGTGGCCTGTCCTACCGAATGAAATtgaaaacccaaaacaaactACCAACCCCTTCTGGAATCAGCTGGGCAGGTCAAACCCATTCTTAAATGAAATCGTCCATGCCAGCAATTACGACTCTGGAGTGTCCATGCTGAAAGAGGATCCTTTATCTCTGTTCGACAGTATTAATGAGGACTCACTCAGCACATCCTCAGATGAAACAAACTTTAATCATCTTTTGGCACCTAGACAAAACAATTTAAACCGATCTGGGAGGTGGAGAAGTGCCTCTGATATACTTGACAACCTTGAGCAGAAGGAAGACAAGAGGACGAAGAGGCTTAACTCTCAGGAACCCTTCCTGAATCCTGATTTTGAGTGGTTGAAGAATGACAGAGAAGCTTACAAAATGGCTTGGTTGAGTCATAGGCAGCTAACCAGGTCCTGTTTGGATCTGAGCCTAATGAAACAAAGTCCTGGATGGGCCCAGACTCAGGCCACAGACATTCAAATCTTCTGCAAGATCGACCACAATGGCGGCTCTGTGCAATTGCCAGATGCCGATATCACTGCCCATATTCCTCAGGGACACGTCCCCCCAGGTGAAATCCAAGAAATCGGCCTCAAAGTACTCCTCGATCCTCCCCCTGGTATGAACAACAATTACACCACAACCCTAAGTCCTCTTTTAGAGGTCAGCCTCAGTAACCATAATGTTTCGGGGGGCATTTCAATGGAGATGAGAATGGCTGCCAAAGTAAAAAGTGACCCCACAAGCCACGTATTGACCTCATTCATAGGTCTAGCTTCTCAAAGGAAAGAAGGACCTTATCAGAAGATAAAAGACTGTTACATATACAATGATATGTTACAGATGAAGCTCTTTGATTTAAAGCCGCGCATGTATGTCATAACTGCTGCCGAGGCCACAGTTTTGGAGCAACCTGCTATGTCAGTGTGGGATTACTTGGATCGCCATCTCACGGTGGCCGTCTACGGTCCCAAGCACATACACCCATCGCTCAAAGTAGTGCTGGTCATATCGAGCCATGATAATATTCCACCCAGGCTCCCTTTCTCTGATATCCAGAGGGATGGTAGGAACCTGCCTCCTGTTGTCTTGGAGCTTTGGGGAAAGCATCAATTCAACCCACATGGTCTTAAAGATCTTCAAATTGCTTCTAGGGTGTTGGATTCAAACTTTGAAGTGAAATCAGCAGATCTGAATAAAGAGGTAATGCAGGAGCAGCTTAAAGCAGGAAAAGTGCTTCATCTACCGTTGGATTTGGTCAAGGTGACTGGGGGTGAAATGTGTCCCTTCCAACTCAACATTGAGGTAAAGGATCCAAACAGTCTCACTTTAGGTAATTTCAACATTACTTCCCCTGAAGCTGCCCCTTTGAGGTCAGAAAAACACAACCACAGGCGAGCAGATCGGCAGAGGGAAGTTACTCGTTCCACACCAATTCCTGAGGAATCGATCCCAGACATCCTTACCCAGAAGTTTCAGGACAGAACTGTGGATTTGCATTGGTACGGGGTAACAATGAAATCGATTCTCAGACAACCAAGAGTGGAATATCTTCTGGAATACTTCAAGGGTGATACAATTGCTCTGCTTTCTAAAGAAACTGTTAAGTCTGTTGGTCAGATGAAGGTCAAAGAATGGTACGTTGGCTTTCTCAGAGGAAGAGTTGGGTTGGTGCACTGCAAGAACTTGAAGGTCATAACTAAGGATCAAGTCATCGACTTTACTGGAATTAAACTCACCACATCAGTCCTTTTGGACAATATGGCACTTCCTTTTAAAAAACTCACCTACATGTACTCTGCAATTCAGACCCTGGTCACAGAGCACGTGAAGTGCTGGAGAACCTTTGCTAAGGCTCTCGGTTACTCAGAGGTCTCCATTGATGCCATCTCCAGGAGACACGCTGACACAGAGGCAGAGAAGGTAGCTTGTGTTCTAGAGAAGCTCAAGGAAGACTGTCATGCAGAGAAGATCAAGAAAAAGTTCCAGCATGAGCTAATCATAGGGCTGTTAAAGATGGATGTTCAAGGTGCAGTAGCCCATCTCATCCAGGATATAGTGATTCTATCCACAGCAGTCGAACTGGGAGTGCGATGGAGGGAACTTGCCGAGAGACTGTGGAAGCTCTCCAATGCCCAAATTGCTGCTTATGAGGCACCACACAAAGGCAAAAATGGAGAAGTTAGTTCCCAGTCAATGTGGAAGCCTGCATATGACTTCCTGTATTCCTGGAGTAAGCGGTACGGGGATGGCTACAGGGATATGATCCAGGACCTTCACCTGGCCCTGGATAAAATGAAGAGCCCAGTGACCAAGCAGTGGAGACAGATTACTGGAGCTCTCATTACTGTAAACTGCATGGAGGTCCTAAGGGCATCCGCCTTCCCCAGAGATTAGGAGACGATTCCTGGAGCATCTGCACGCCAAATGGAGGTGATCCTGCTGAGTTCATACTTACACCAGTGCCATATTTTGACATGATAAATATTAGGTGGCATCTACCCTGTTATCTGAAAAGTGAGTATTTGTAACTGTGCACCTATCTGTGTATTTTATGTGTTGTATTCTTGTGGAATTCACTGTGACAATTGTGAAAGCTGTTGCCTGGTTCTTAAAAAGGTTGTTACTAAATCCCCTATGCAATGTTAAGGGTTGTTGGTGGAAAGAAATGGgagaattattcattttgataGAGATGGAatctgaaacattttcattctaGATGAACTGCCTCAAGGTTACCTCCTTTCGTTGTTTTACTTGAGCTGTTTTGCTTGAACTGTAAGTGTCTGTatcagtacattttaatatttgaagctGTATGTGGAGTATCTGGTATAACTGCCTTATTGGAATGCAATAATTATTCGTATCAATGTATATTGATAATTTCACTAACCAAGAATGTACCGTTATACTAGGTTTAACATGTAACATCATATCTTTGTATGatactgaaaaaaattgtattgatgtatttttatatgttgtgTATTGCtagttgtcattttaaatgtactaactACAGTGTTTAAGAGTGAGGGTCCTTGTATAATTGCAAACCTTTGTTGCGTTAGAAGAGtctttaaaatctattttgtattgctgtattttttaatgctaataCACTTTGAGAGttataattaaactgtaaaCTTTTGTAATGAAGGAGCTCTATAATAAAGGGCaaagacattaataata

Function

GO:

id name namespace
GO:0048701 embryonic cranial skeleton morphogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164826 lncRNA downstream 23811 11983379 ~ 11983646 (-) True G111668
TU164819 lncRNA downstream 63502 11942364 ~ 11943955 (-) True G111661
TU164803 lncRNA downstream 140142 11865680 ~ 11867315 (-) False LOC122361049
TU164789 lncRNA downstream 187679 11818459 ~ 11819778 (-) True G111639
XR_006252803.1 lncRNA downstream 223123 11783695 ~ 11784334 (-) True LOC122360397
TU164845 lncRNA upstream 19649 12032593 ~ 12035126 (-) True G111680
TU164863 lncRNA upstream 62653 12075597 ~ 12076159 (-) True G111688
TU164864 lncRNA upstream 63509 12076453 ~ 12077007 (-) True G111689
TU164865 lncRNA upstream 67708 12080652 ~ 12080853 (-) True G111690
TU164891 lncRNA upstream 124517 12137461 ~ 12137772 (-) True G111712
XM_043261680.1 mRNA downstream 6550 11999570 ~ 12000907 (-) True tmem196b
XM_043260328.1 mRNA downstream 20007 11985634 ~ 11987450 (-) False twist1b
XM_043260327.1 mRNA downstream 20007 11985636 ~ 11987450 (-) False twist1b
XM_043260326.1 mRNA downstream 20007 11985636 ~ 11987450 (-) True twist1b
XM_043260961.1 mRNA downstream 121808 11869198 ~ 11885649 (-) False ankrd28b
XM_043260276.1 mRNA upstream 22963 12035907 ~ 12040947 (-) False sp8b
XM_043260274.1 mRNA upstream 22963 12035907 ~ 12039074 (-) True sp8b
XM_043260275.1 mRNA upstream 22963 12035907 ~ 12038806 (-) False sp8b
XM_043260841.1 mRNA upstream 142826 12155770 ~ 12203088 (-) False rapgef5b
XM_043260840.1 mRNA upstream 142826 12155770 ~ 12203088 (-) False rapgef5b
TU164609 other downstream 595680 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 721025 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 1124246 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 1141029 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 1259157 10746793 ~ 10748300 (-) False LOC122361037
TU165859 other upstream 1641116 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 2221610 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 2896381 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 3455536 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 3455536 15468480 ~ 15496375 (-) False rps19

Expression Profile