RNA id: XM_043261828.1


Basic Information

Item Value
RNA id XM_043261828.1
length 4174
RNA type mRNA
GC content 0.41
exon number 11
gene id casp2
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 8759127 ~ 8767209 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TACAACATCCCCCGCGGAAGTTTGTACAGAGAATAGGGGTGCTGTcagttattttcaaaaatacgtTTTTCGCCACTAATTCCGTCGCTTCGCGTGTTGCCTCGAGGACGAAGTCGAAAGACAAAtagaaaatgacttttaaaggtTGAATTTTGCATCGAGAACAACAAAGCTTTCGTGGAGTGCTAGCACCTGACAGCTAATAGTAttgttgtaaatgtaatttattttttttaatcgctCGTCAACTTCATAAACAGCCTAGGAAAGAACCACAAAACGATTTGAGCTGCAGTTTAGCAGCTGACCAGCTTTTACTATAAGGTTAGTGTCAGCAGTGTTATATATTGACATTAGcgggtttttttgttgcttttattagCATGCTAAGCTAGTTTGCTGCACGAGCTGGCTTTCACCATTCTGGATTTACATCAAATCAGCATCACTTTTCATACAGCGTCATAATTGTGTTATTTACTGTCATCTTCAGACGGCAAGAACTGTAATGCAAGAGAGGTTCATCATGCGGGGAGATTGTGGCATGAAAGCATGGGAGAGACTAGCACTCAGGAACAACTCTGTCACAATTCTACAGGACTTAGTGGTGGATGATCTGCTGGTCCAGTGTCTGCAACAAGATGCAATCCTCACAGAAAACATGGCTGAAACCATTATGGCTATACCAACATCCCAAGGCAAGAGTCGTCAGCTGTTGTTTCTTTTGCCTAAACGTGGCCCTCGAGCCTTCAGCAGCTTCTGTGCTGCTCTTAAGGTGACAGAGCAACAGCATCTCCGCCGACTGCTCATGGACTTCACTGAGAAAGACAAAAGCTTTTCAGAGCCATCGCTGTCCCTTCCAACTCAGGAATGTGTTATACCTGCGAAAAGAGCCCGGACTCATGagtCCATGGAGATGTGTTTGGATGCCGACTCTCCCGTGACAACAGCTGTTATTCCATGCACGCCGGAATTTTACCAGTCCCGTAGACCACAGGCTTACCCGATGCGCTCCTGCCCGCGAGGACTGGCCCTGGTACTGAGTAACGTGAGGTTTGACTCAGCTAACACGGATTTAGACGTCCGGAGGGGAGGAGAGGTGGATGAGGAGACGCTGAGGAGACTTTTCATGGAACTGGATTTCACAGTCAGCCTGCACAAAGACCTCACGGCTGAGGCAATGCGCAGGTGCCTAGAGCAGTTTGCCCAGCGACAGGAGCATGCAGAGTATGACTGCACTGTTGTGTGTTTACTGTCCCATGGAGTTGAGGGATCTATCTACGGCACTGATGGACAGCTCCTGGAGctgGACTGGGTGTTTGAGGTTTTTGATAATGCCCGCTGCCCTCTTCTCCAGAATAAGCCAAAGATGTTCTTCATTCAGGCTTGTCGAGGAGagGAGATGGACAACGGCGTGGACCAGTTGGACGGTCAGGAACGGACTCAATCTCCAGGCTGTGAACAGAGGGACGCTGGCAGAGAAGGGGAGAGAGACGAcaaagagagggaggagaaagaccGAGAGAGACTGAGACTCAAACTGCCCCAGAGATCTGACATGATCTGCGGCTTTGCCACCCTCAAAGgCACTGCTGCAATGAGAAACACCAAGAAAGGGTCCTGGTTCATTCAGGAGCTGAACAGTGTCATCCGACAGAGAGCCAACGACGCACACCTGGCAGATATTCTTgtgcagGTGAACGGTCGAATTAAGAGCAGAGAGGGATACGCACCTGGTTCAGCCCATCATCGCTGTAAAGAGATGTCAGAGTTCACCAGTTCCCTCTGTAAAGACCTCTACCTCTTCCCCAAGTACTACCCCAGCAACTAGACACATGCACGCACAAACACTCCCCAGACACGAAGCACACGCAGAACACACTGCCATCAGAGCCGAAGCAGTAGCGGCAGCTCAGCACACGTGTGTACATCCATCACCAGACACACAGACTCATGCAAATCTACTTATACTCATTCCATGTGTCATCTGTTTCACATTCCTCAGCACAATGACAGCTTCACCAGGATGCGTGTGTGCTTTAACTATAAAGGATTTGCCAAGATAGATCAGTTTTTAGGTCggaggcttttttttcttttcttttttagatgcacttgcaaaaatgtattgttcctttcttttttattattactttttttgcctTGCCTTTTTGAACCAATGAAATTTCTACGGTTgaagaaatgtgtaaaaaaaaaaaacctgttaatgTTTTCGTGATTTATAGGGGGAGACTGGGGTTAAAAATAATCccaaatgaaatatatttttttattctaatatttttttttttattcagtagctGTATAAAATGCCACATAATGACCCTTTTTTAACCAAAGccaacattttatcatttttttgtttcatcaaatttattgttgtttgttttactttgcacagttttttttctcagtaattCATGTTCTGTACGTTTTGTAATTGTGGAGCCTTTTTATAGCCAACCTATAAACTTGTTGGTACGTTCAGAGCAGCTGTCACACATGCAGGGCTGTATGCATAGACATTGATAGAAACATTGTGCCAGTACTATAGTAAACACCTTCATACCATTTCACTTATCGGAAATCGGAGCAGAGCCAATTTGCTCGCTCTTTATCAGTGCAGCTTTACGTGCATTGTATCAACATcagtacaattttaaatgaatgttttctgtTAGTACTGTGGCATGACATCTGTTAATTATCTTTAGTAATCCTGTATGCATCATGGCAGCTTTACTGAACTTTAACAGGGCTTCCTGACTCAAAGTAAACAGTTAAACTACTCCATTTTGGTTGGCATGTAATATTTAGAACATTACTAAGATGCATATCAGTActttttttacagatatttgTGCTATTCTAAAACTTCCAAATTCCAGTTGCATTCCAAATGGTGTTTCCAATGTGGAGTATTGTCAAAATGAAGtgtatatatcataatatttcatattcatgcatgtacatatgCATATTTCCTTTACCTCTTGCACATCACTTTTCACTTTAAACATTACGTGTGCCAACAAATGCACATTATGGAGACTGAAAGTATGCTGTCTTAATGAAAAGCCTGCAGGGGGCGCTAGAGAGCTTTTGTATTTCAATAGCTCACCTTCCAGGATTTAGACACAGTCTCTCTGTTCTGCACACACAACATTATTCCCCCTGGGACCGTAGGGTGTAAATTTGAGTGTGCTGTTTTCCATCTGTGCATGTGTCTTCCTGATTCAGTAGGCATGATATTTAGGTTAAAGGTCATACCTATGACCTTTTGACACTGCCGTGGAATCCATTTCACATTTGTCACCTTTACCATAGGTTATCACTCAACATCAtttgttaaattttatttttaactgtttttagaAGCTAAAATATTTGACGTAGATGTACACTGTTCATGCTGATACTATTTTCAAGCAACTGTTCGTTTGTTGagttttattttggtattttaacCAATAAGCTTGTTTGAACTGGGTGAATAATATGGGCATAGGTTCATTTTatgcaaacattaaaatctAATAGTGAGGGGTTGGTGCAgataattaatttctaaaagaTTAATTGCATAATAGGAAAAAGTGCCATTAAAGTAttacttaaaaacaaattaacaaattttGAACGAAGTTCAAAACTCAAGTAAGAAATAAACGTATATATTAAGACATGTGTTCATTTCAGACCCaaagctgtgtttgtaattTCTTTAATCCCACAGTCATTCCATTGAGAGAACGCCAGCACATTTACAGTATGTTCTCTAAAACCAGCCTAAACGTTCATTTAAACAACTCCTCTAGCTGTATTCATAGATAATCAGTCTATTTCTCAGGCTGTGTGTTTAGCACCTGGTTTTGAATGCGTGACATTCAGCGCTTCAGGTTCGAGTTGTagtaacaaatgtttaaaagttcGAAGGTATTAAAACCCGAAATGAACATagatgcatattataaaatCCAGTCCCTGCCGGACGAGTGCCTAGCCAACTTGATATTAAATGGTTTATTCACTGCCTTTTTCATCCGTACTAATCAACTATGAAGGGTGCTTAAAGAAACTTTAGGGAAactgtcatttttgtatttttgtaatgcaaaagCTGCCGTCTAATAAAGAAACGCCGTTCCAAAGA

Function

GO:

id name namespace
GO:0043281 regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0043065 positive regulation of apoptotic process biological_process
GO:0006508 proteolysis biological_process
GO:0008630 intrinsic apoptotic signaling pathway in response to DNA damage biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163638 lncRNA downstream 168493 8589898 ~ 8590634 (-) True G110773
TU163610 lncRNA downstream 207575 8547782 ~ 8551552 (-) True G110753
TU163615 lncRNA downstream 207575 8547782 ~ 8551552 (-) False G110753
TU163331 lncRNA downstream 519951 8237758 ~ 8239176 (-) True G110548
TU163329 lncRNA downstream 523334 8234908 ~ 8235793 (-) True G110546
TU163682 lncRNA upstream 78316 8845525 ~ 8845993 (-) True G110807
TU163727 lncRNA upstream 233578 9000787 ~ 9001428 (-) True G110836
TU163733 lncRNA upstream 237329 9004538 ~ 9005206 (-) True G110842
TU163741 lncRNA upstream 240088 9007297 ~ 9007532 (-) True G110849
TU163744 lncRNA upstream 263926 9031135 ~ 9031449 (-) True G110852
XM_043260964.1 mRNA downstream 228 8731697 ~ 8758899 (-) False clcn1b
XM_043260967.1 mRNA downstream 1662 8731697 ~ 8757465 (-) False clcn1b
XM_043260962.1 mRNA downstream 1662 8731697 ~ 8757465 (-) True clcn1b
XM_043260963.1 mRNA downstream 1662 8731697 ~ 8757465 (-) False clcn1b
XM_043260968.1 mRNA downstream 1662 8731697 ~ 8757465 (-) False clcn1b
XM_043261437.1 mRNA upstream 7386 8774595 ~ 8780023 (-) True m6pr
XM_043260417.1 mRNA upstream 29548 8796757 ~ 8805113 (-) False ccdc106a
XM_043260418.1 mRNA upstream 29548 8796757 ~ 8805113 (-) False ccdc106a
XM_043260416.1 mRNA upstream 29548 8796757 ~ 8804926 (-) True ccdc106a
XM_043261271.1 mRNA upstream 54456 8821665 ~ 8833880 (-) True si:dkey-17m8.1
XR_006252934.1 other downstream 111572 8647414 ~ 8647555 (-) True LOC122361375
TU163623 other downstream 122905 8633350 ~ 8636222 (-) True wu:fj39g12
TU163343 other downstream 442442 8312265 ~ 8316685 (-) True G110556
TU163340 other downstream 456882 8298789 ~ 8302245 (-) True G110554
TU163327 other downstream 542532 8216029 ~ 8216595 (-) True G110544
TU163829 other upstream 378721 9145930 ~ 9152183 (-) True G110911
TU163906 other upstream 503762 9270971 ~ 9272605 (-) True G110974
TU164366 other upstream 1979584 10746793 ~ 10748300 (-) False LOC122361037
TU164396 other upstream 2094742 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other upstream 2094742 10861951 ~ 10866428 (-) False LOC122360812

Expression Profile