RNA id: XM_043261852.1


Basic Information

Item Value
RNA id XM_043261852.1
length 2553
RNA type mRNA
GC content 0.46
exon number 11
gene id tcaim
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 9705840 ~ 9714651 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGCCTGATTGAAGTGCGCCCAGCTGCGCTTGTTTTCAAGAGATGGGCAGTCGATTACTCCTGCCTGGGTGAATAGGCCTGAATGGAGAGCATGAGTTCAGGCTTAGTTTAACCACAGCGAACATGTAATATTGCAGAATCACAGAAGGAACTAACGTGATGTACGTGACCACCTTCCTGCGTTATGTTAGGCTTGGTGGTAGATGTAGTGTTTCTGCTCGAATCGTTCAGAGGAGGAATCTCTCAGGAGCGGATGCCATTAACGCCCTGCGGCCATTTTACTTTGCAGTACACCCTGATTTCTTTGGCCAGCATCCAAGAGAgagaGAAGTGAATGAAAACTCCCTCAAAAGGCTAAATGGCTATCTGGAAAATCTTCAAAAGCCTGGGGCGAGGTACCCCAAACCTGCAAACCTCACGTTTTATGTCAGGGACACGAATGAACGAGCAGACTCCGGTGAAACTCTGCTAGCCTCAGGATTCCGTTCAGTGACTTTCACCCTGCAGTCTAAGGATGTTCTGAGCACAGTGTTGGATGTCCTGAGGTCTTGTAGTCTCTCAGCTGAACATATGCAAGACGTGCTCAAGACTAAGACCGAGAAGAGCTCGACACAACAGCCCGGCACGGCTTTCTATCGCCCCATTAAATGGGACAAGACCTATTACACTTTCACAGGATTCAGGGACCCTGAGCAGGAGTTAGAACAAGCCAGGCGAGTGGAGCCCACACTCAGTTTATGGCTGAGAAACAATGAGCCAGAAGCCACAAAGAAACAGAATGCCAGTGTTCCACGCCGTGAGGAGCTGAAAAGACTGAAAAGAGAGCTGATTCAGAAACTCGGGTTGCTGGATATCAGGTGGCAGCGCAAATGGGGTTTTGCACACAAATGCAGTCAGCTGCAGAGTCTTGGCCGTCTCTTCACACAAAGCCCAGAGGCTCTGCACATCCTGAGAGGACACACAATAGTTTTTACAGACCAGTCAGGGATGAATGCCTCAGGGCATGTCATGTTAGGAACAATGGATGTCCACCATCAATGGACAAAGCTCTTTGAAAGACTGCCGAGTTACCGGAGCCTGTTCCAGCAGTCGGACTGGCTGAAAGAGCGCATCAGTCACCTGTTGGGAGGGATCCAGGTGATCCACATCGAGCGGATGGGTCCAGTTCTGCCTCTGGAGGAACACTACAGCACCCTCAACGCTTTCCACAAGAGACTGTTGCCTCAGCGCCTCTCTCTGCACCCCCGCAGCATGCAAGGCCTCACAATGACCTTGGAAAATGACCGCTCCACCCCCTGCCTGCATGAGATGGGCCACTTCATCATCCCCACTATGTGTGACACCCTCCAGCTGCAGAACTTCCTCCAGAGCCAGGCCCGGGAGGCCCGAAGACGCATGCAGCGCACAGACAAGTTGGAGGCGGAGGAAGAAGACATCATTTCGAGTTGCCTGCAGGATTTGTCTCTGCGCAGCCTGTCCAAAGAGCCCAGTGTGTCGAGCAGTCAGATGATCCCCTGCTGCAGGCGTCTGATGGAGGAGAAATCTCCTCACATGCAGGGCCTTCATCTCTACGTCTCTCACTTCTATTCGGTCATGCAGGATGGGGATCTGTGTATTCCCTGGGACTGGAAGGGTTGAAACAGACCGAACGCTATTTGGACTCCGTTGCTATGCCTTTCAGCATGACGCTCACGATTCTGTGAAGATTTTGAGATTCGGCCTAGTGCTGTAGGCATTATACGTGCACTTTGGAACTAGCACATAGTGTTGTGCTTTTGAGGCAGTTGGCCCCGGTTTTGTAATGTATGTTACAACTTAGCGCAAAGTTTGTCGTTCATTTGCCATGTACATTTCACATGCAACGCTTCAGGGtcatattgtttctttttcttttttgtctcaATCTATTATAAAAACAGCTTATGGAAATCCGATAAGGCTCTTTATTTGCCTTAAAACAATTAGGTGCTAGTTGCACCAGATCAGAGATTTAACTACAAtcatgtttttgtggtttaataCGCAACTTCTGggttttaaatacacattttttggtTAGTTCTGGTTTTCAGAGGGGCGCTCAGTGACTGCTTAAATCATCTTTATCATTTCAAAACCCGAATGCTTGCGACTGAGAGGAATTAAACGCATTTATTAACTGTGATACCCACTGCCAAAACCTAAAATGCAGAGTCAAAGATGTGTTTGGACAAAATGGGTTTGTCTAAATGCTGAGTATGAAAGTATTAAGAATTTTGGAAAGTGTTTGTACATTAGCAATCCTGAATGCTGTAATATTGTCTGTCTTAAGATTTAGCGTACAATGTACCGGTGTCGTTTGCTGCTATCGTGTTTCGAATGTTTATACTGATATATTTACGTATGATGAATATCAAAACTGTGTAACCACAAAAATTGAAACAACGGTTCAGATGTAACCAGTCACTGTTGTATATGTTGTTAATATGTACCTGTTTGGTTTACAATGTTTGCAAGATTCCATGAATTTTCCACTCTGACaggaattaataaattataatagaataataaCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163998 lncRNA downstream 29335 9674864 ~ 9676505 (-) True G111045
TU163971 lncRNA downstream 81721 9623700 ~ 9624119 (-) True G111025
TU163969 lncRNA downstream 85387 9620119 ~ 9620453 (-) True G111024
TU163966 lncRNA downstream 98767 9599932 ~ 9607073 (-) True G111021
TU163945 lncRNA downstream 318449 9386179 ~ 9387391 (-) True G111005
TU164002 lncRNA upstream 39664 9754315 ~ 9754980 (-) True G111048
TU164072 lncRNA upstream 160741 9875392 ~ 9875664 (-) True G111097
TU164073 lncRNA upstream 164984 9879635 ~ 9888229 (-) False gask1a
TU164074 lncRNA upstream 174420 9889071 ~ 9902981 (-) False gask1a
TU164327 lncRNA upstream 1015517 10730168 ~ 10730415 (-) True G111298
XM_043261087.1 mRNA downstream 3573 9678223 ~ 9702267 (-) True trim71
XM_043261436.1 mRNA downstream 76794 9627246 ~ 9629046 (-) True ccka
XM_043260592.1 mRNA downstream 181843 9387510 ~ 9523997 (-) False ulk4
XM_043260591.1 mRNA downstream 181843 9387510 ~ 9523997 (-) True ulk4
XM_043260593.1 mRNA downstream 181843 9411383 ~ 9523997 (-) False ulk4
XM_043261435.1 mRNA upstream 63666 9778317 ~ 9787092 (-) True abhd5a
XM_043261431.1 mRNA upstream 103935 9818586 ~ 9858631 (-) False snrka
XM_043261430.1 mRNA upstream 103935 9818586 ~ 9858024 (-) True snrka
XM_043261423.1 mRNA upstream 162560 9877211 ~ 9902814 (-) True gask1a
XM_043261427.1 mRNA upstream 189822 9904473 ~ 9914342 (-) True entpd3
TU163906 other downstream 433235 9270971 ~ 9272605 (-) True G110974
TU163829 other downstream 553657 9145930 ~ 9152183 (-) True G110911
XR_006252934.1 other downstream 1058285 8647414 ~ 8647555 (-) True LOC122361375
TU163623 other downstream 1069618 8633350 ~ 8636222 (-) True wu:fj39g12
TU163343 other downstream 1389155 8312265 ~ 8316685 (-) True G110556
TU164366 other upstream 1032142 10746793 ~ 10748300 (-) False LOC122361037
TU164396 other upstream 1147300 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other upstream 1147300 10861951 ~ 10866428 (-) False LOC122360812
TU164545 other upstream 1556013 11270664 ~ 11286432 (-) False G111450
TU164609 other upstream 1696027 11410678 ~ 11411777 (-) True G111490

Expression Profile