RNA id: XM_043261859.1


Basic Information

Item Value
RNA id XM_043261859.1
length 3968
RNA type mRNA
GC content 0.50
exon number 21
gene id LOC122360979
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 14727085 ~ 14746625 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGTTGTCTTTAGCAAATGTTTTCCCTTGGGTTTATTAGCTAGAGCTGTCACATTTAAAGAGACCTTCTCTACTTTTTACGCTATTAGTTCTCATGAAGGAGAACCAGAGGAGGTAACAGGGGAACATTCAGCAGAGTGAAACATAAACTTTGCCTCAACGTCAGGATGTCTGCCCCTGTCTCGGGTAGGAAGACCCCCGTGGACTATGGCGTTCAGATTCGTTTTATAAATGACCTGCAGGACACTGGAGGGGGAGTGAGTGGGCAGCCTCGGAAAGAGCTGtcaaaaaaacctccaaaaaagCCACAGTCTCGCTATGGAGTGGCAGTGAGGGTGCAGGGCATCGGTGGGCAGCCCTACGTTGTACtgaaagagggagaaaaaggAGATTCATATGGAGTTCAGCTGAGAACCCAACCACCTCCCTACAGCAGCCTGCCTAGgAGGAGAGAGGATGGGGTAATCCAGGGGCCATATTTCTCATCTGGAGACAACACCCCCTTGCGTCGGGCTCAGTCTCATGGCTCACTGTTGGATAGAGAAAACATCAGCGAAGGCTTCACAGATGAACTGCGACGTCCGCTAGGAGATGGACGCTCCGGTAGCTATGGTAACCTTGATGGAGGTATTGGTATAGGGGCAGACAGGGAGCTGCCTAGAGAAAGGATGGAGAGAAATCAGTGGGGTGGATCCTACCAGACAGGGCTGAATGGCACTTTGGCAAGAGGGAGAGCAGGAGGCAGTCACTACACCTCATCGGAATCAGTCGAATTATCTCCATACAACCAGCACACTAACAGCCAATCAGCTCCCAACTCCATCCGTCAGACGCCTGCCCACAGACTGGCGGGTAACACCGGGACCAACGCCAAGGGACGCTATCCCATCCCAAACAAAGACGACAGACCCACCTCAACTTCTCCATTACCTGCTACATCTATCATCCTAAACACATACTCTTCACCGCAGTCTTCTTCACCTGCTTCTGCCTACAGCAGCCTGGGCCGTGGATCAAGTTCTGTTGCCAAGGTTACGGCTGTCTCTTCATCTGCTTCAGTTGATGGACATGTAACTCCTGACCTTTTGATGGACCAGGGTCAAAGTTCAGGTTCAGAGTTCTCAACTGAAGATCACATACAGCAGATAATCTACGATGTTCTACGTCAGGGGAGTACAGAGGGAGATGCTGTCATTAAGCACAGAGCTCGAGTCATCTGTAATAAAATTCAAGGACTGAAGGTGAACAGATCTGATGACTCCTTGAAAGAGGAGCTTGAGAAATGTCTGGATGAAAATGTACAGCTGCAGGAACAGTTGGGACGAAAGAATACAGAGCTGCACCAAACGCACTCCGAGCTAACTCAGTTACGAATGGACAGAGAGAATGCAGAATCTCATGTTAGAGAGCTGGAGGATCAGCTGGCGGGACTTCAGGAGGAGctgaggagagagacagacaacaAAGCTCAGGCTGACACTATGCACATGGAGTTGATGGCGGTGAGAGGTGAGTTGGCCGAAGCTGCAGCGCTGTGTCAGAAGCAGGAAGACATCgtgaggcagagagagagggagctaACTGCTCTGAAGGGGGCACTGAAAGATGAGGTCTCCACACATGACAAGGAGATAGAGGCTCTCAGAGAACAGTACAGCCATGACATGGAGCGACTACGAGCAAGCATGGACCAGGTTTCACAGTCTCAGGCAAGTATTGAGGCCGAACGTCACCGTGTGAACTCTACAGTAAGGTCTCTTCAGCAGCAACTGGAGGAGAGCAGAGATGAGGGAAACCACTGGAGAGAGCAGTTTCAGTCCAGCAGAGAAGAGCTACGCAACACCAAACAAGATTTACTCCAGGCTCGTATGGAGAAAGAGGAGTCTGAGGAAGAGCTGAAAGATCTACAGGAGAAAATCAACATGATGAAACAGCAGATACCAGATCCCAAACAGACCCAGACAGTCAGCCaggAACTTGAGCGTTGTCGTGCTGATCTACACAAGGCCCAGGCAGATATGGATAAATTAAGAACAGATCTCGACAAGAAGACAATGGAAATTGTGTTATTAAAGAAGAGCAAACAGGAGCTTGAAGCAGAGCAGAAATATGAGATTGACAGATTAAGGGACCAGACACGCAGAGATAAAGAAGAGCTGACTAAAGCTCACGAGAGGGCCAAACAGCTAGCAGAACCTTCATTGGTGGAGGCCCTGCGCAAGGAGTTGAGTGACATGCAAGAAGAGGTGGGCCGACTGCGCAGTCAGCTGCTCTCAACTGAAGAAGAGCTGCAGGCAGGGAGAGACAAACTCAGCTCTGCTCAGACCCAAGTAAACAATCTGACACATGAGCAGAAGGAACTTGAGGAATCCAATGCTCGTACAAAGGAGAGAATCATACGCTTGGAGtcTCAGCTGCAGGAGCGCACGTCTCAGAGTATTGAGGCTGAACAGGAGCAGCAGGAGGAGACCAGAAAACTGAGACAGCAGCTGGAGGAGTCCAGGCGCGAGAGCTCCAGACTGGGCCTAGAGCGGGATGAGCTGACTCGTAATCTGGAAGAGAAGGAGAAGGACAGAGACGCTGTCCGCAAGGAGAATGCACAGCTTGAAGACCAGAAGAGACAGCAGGAGAGAGCAGTTGACAAACTCAATAAAGAGATGGAGCGCTTGTCTGCAGCATCCCGTGAGGAGATTCGACTCCTGCAGGCTCAGCTGGATGAACAGAAAGAGAAGTGGAGGAAAGAGCAGCAGGACTCGCATAAAAACGCCAAAGAGAAGCTCAGTGAGCTGGAGAGAGCTCAGAGCACCATCCGTTCCCTACAGGAAGAGatgGCCCGTCAAAAAAAGGAGCTGTTCTCAAGTTATGAGGATCGAGATAATGCTTTACTAGATAAAGAGATGCTCACCAACCGCCTCAAACATATAGAGAGTGAGATCGAGACACAGCGTACCACACAAAACGACCGGTCGCGTGAGATCCGCAGCTTGGAGGACAAAATCAAGCACCTGGAGCTCGAGTTAGACgaggaaaaaaacactgcagagaTGCTGACAGAACGAATCACCAGGAGCCGAGATCAGATTGAACAGCTGCGTGCAGAGCTCATGCAAGAACGATCCTCCAAACAAGACCTGGAGCTGGACAAAAATGCTCTTGAGAGACAGATAAAGGATTATAAATCTCGTGTAGCTGAGATGGAGGGCCAGTCACGTTCCTCTACTGGTGTGTCTCAGCTGGAGAGCAAAATCCAGGACCTCGAGGAACGACTGCGTGCAGAggagagAGAGAAGAACTCTGTGCTGTCCTCTCAGAGGCGTTTGGAGAGGAAGCTAAAGGAGCTGAACATCACCCTGGACGAGGAGAGACATCAGCACACAGAGCAGAGAGACCAGCTGACTCTGCGTGTGAAGGCTCTGAAGAGGCAGGTGGATGAAGGAGAAGCTGAGGCGGAGAGGTTGGAGGGATTGAAGAGGAAGGCCGTCAGAGACATGGAGGAGATGCAGGAGCAGAAGGACGCGCTGCAGTCTAAAGTCACGGCACTAGAGAATGAGCTCAAGAGGAAGATCCAGCAGGCCCGACAGTCAGCTCTGGAGTCTTCAGTTCTCAgctctgatgatgatgatgatgatgatgatggattGTATGATCACTCCAGCATAACCTCCATCCTCACCGAGAGCAACCTGCAGACCAGTTCCTGCTGAAGAGCACGAGGGGTTTCCTCTTCATTGATGCTTCATTCCTGGACACACACTACCATAATTATAAATCAGATTACAATATGGGATTTAAGCATCAATAAAACTGGACAACAGCTTTTCACACACTTTAAGACACCTGACTTTTCACTGTCAGTGAGTCAAATAGATTTCAGACGTGACATTTATCTAGACATCGGCTCCACCTTAGAGACTTTTTATGAGAAAAGCCTTAATGATCCTtttagtgtgtatatatgtgtatatatat

Function

GO: NA

KEGG:

id description
K06102 CGN; cingulin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166370 lncRNA downstream 11594 14715216 ~ 14715491 (-) True G112686
TU166328 lncRNA downstream 72935 14591362 ~ 14654150 (-) True G112659
XR_006252747.1 lncRNA downstream 88753 14633214 ~ 14638332 (-) True LOC122359963
TU166357 lncRNA downstream 89692 14635563 ~ 14637393 (-) False LOC122359963
TU166341 lncRNA downstream 139216 14582479 ~ 14587869 (-) True LOC122359961
TU166909 lncRNA upstream 145415 14892040 ~ 14892395 (-) True G113034
TU166910 lncRNA upstream 152557 14899182 ~ 14904907 (-) True si:ch211-105c13.3
TU166911 lncRNA upstream 152557 14899182 ~ 14904907 (-) False si:ch211-105c13.3
TU166915 lncRNA upstream 199970 14946595 ~ 14947384 (-) True G113039
TU166926 lncRNA upstream 223980 14970605 ~ 14988931 (-) False si:dkey-246i14.3
XM_043260412.1 mRNA downstream 7505 14717064 ~ 14719580 (-) True LOC122360089
XM_043260202.1 mRNA downstream 12119 14701898 ~ 14714966 (-) True tuft1a
XM_043260200.1 mRNA downstream 29997 14687731 ~ 14697088 (-) False si:dkey-92i15.4
XM_043260199.1 mRNA downstream 32276 14687731 ~ 14694809 (-) True si:dkey-92i15.4
XM_043260203.1 mRNA downstream 38917 14682828 ~ 14688168 (-) True aqp10a
XM_043261772.1 mRNA upstream 149596 14896221 ~ 14899047 (-) True s100t
XM_043261773.1 mRNA upstream 152572 14899197 ~ 14900547 (-) False si:ch211-105c13.3
XM_043260128.1 mRNA upstream 161995 14908620 ~ 14913646 (-) True LOC122359907
XM_043261042.1 mRNA upstream 167323 14913948 ~ 14924517 (-) False pbxip1b
XM_043261039.1 mRNA upstream 167323 14913948 ~ 14924517 (-) False pbxip1b
TU166030 other downstream 425466 14234554 ~ 14301619 (-) True G112478
TU165859 other downstream 1043176 13654060 ~ 13683909 (-) True zgc:92606
TU164609 other downstream 3315308 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 3440653 11270664 ~ 11286432 (-) False G111450
TU164397 other downstream 3860657 10861951 ~ 10866428 (-) False LOC122360812
XR_006252733.1 other upstream 162700 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 721855 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 721855 15468480 ~ 15496375 (-) False rps19
TU167051 other upstream 721855 15468480 ~ 15495722 (-) False rps19
TU167049 other upstream 746196 15492821 ~ 15496375 (-) True rps19

Expression Profile