RNA id: XM_043261872.1


Basic Information

Item Value
RNA id XM_043261872.1
length 2881
RNA type mRNA
GC content 0.48
exon number 8
gene id sybu
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 21991274 ~ 22001056 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATAACACACTTGGACCATTAGTCAGATTTACGTCGTCCCGGCGATGTCAATATCCTCAGCCTCTTCTGCTTGCGCTGTGCGGAATAATCTGGTTTCTCCCGCAGACTGAGGCTGGGAGTCCATCGCATCGGATCCAAACGCGGGCTGAGGACCTGAGGAGAGCGCATTGTGTTGTTTTGAAGGGATCCGGAGCAGcgcatcctctctctctctctctccatccacATCCACAAGAGGAGGTGGGGCAGCAGAAGCGTCATTTTAGATACAGCTAAACGTCTGTCAATCAGGTAAAAGAAAAGGGAAGCATGCGCAGCCGTATCCCTCGATTTGTCCTCCACCCATTACGCGCTAAAGCAAAGGAGTCACCAGCGTCCAACATGCCATTGTCAGAAGAGGAGAGCAAAGATTTTGACATTAGCTCCCAGCACTCTAAAAGAACCATTAGCCCCAACAGCCTGTCGTCAGATGATACCGGATGCCCAAGCAGTCAATGTGCATCGCCAACCAAGACCCCCTCAGGCTCCGACAACAGCCCACTGGGTTCACCCGCTCTGGGAGAGCGCAAGGTCAAGGTGAAGAGAGTTCGGATGAACGTAGCGGCCGAGTGGAGCGCACCCACACAGAAGCACAAGCGAGAGAAGCAACAGCGTTCACCAATCATGAATAAAGGCAGTGAGGCAGATTTCAGCTCATCCAGCAGCACTGGAAGCTACAAGACACGTGAAACTCTGCCCAACAACTCTACAGGGAAGATTTCATCTTCTCGCAGCCGTGGGCCCCACATCAGAAGCCTGCCAGTGTTCAAGCCCCCAGGAAGCCCTACTGCCCCTCGCGATGCAGAGCTGTATGCCCCATACAGGACGCCCCCCAAAGCCCCCTCCTTTACCAACAGCAGTAGCAACTCCAGCTCTACCAGAAGAAGAACCACTCCAGTACGCTATCATAGCTGTGGAGACAATCACGGCATCAAGCCTCCCAATCCAGAGCAGTACCTTACCCCTCTACAGCAGAAAGAGGTAGCCATACGACACCTCAAAACAAAACTCACAGACTCGCAGAACACAGTTTGTGACCGGGAAGCTGAGATTGAGGAGCTGAAGTCCCAGCTGGGGCGTATGCGAGAGGACTGGATAGAGGAGGAATGTCACCGCGTGGAAGCTCAGTTAGCTCTGAAAGAAGCACGCAAAGAGATCAAGCAGCTGCGCCAAGTGGTGGAAACCATGAAGAACAGCCTCATGGAGAAGGACAAGGGCATCCAGAAGTATTTCATTGACATAAACATCCAAAACCGAAAGTTGGAGTCCTTGCTCCACAGCATGGAGTTGGCGCAGAATGGCTGCAGCTTGCAGGATGAGCCAACACTGGACTTTATCTGTGAGTCTCCAGAAAGATCCACTGCAGTCAAGTTAGAGATGGAGCTACATGGTGAAGAACAAGCAGTGGAGGAGATGGCTGATAGTGATCTGCTGGCCAATGACGAGATGGCCAACAGAGCAGAAATTCTTGAGAAGGTTCTCATGTCCACTGTGGTTGATTCCAGCCAGGATGGTGGCACCAAGACCATTCCCCAACCAGGGCTGTCCACCTTGGAGCCGAGTGTATTGGAAAAAAGCACAGAGGAGCATATCTCAACTGACCCCTTTGGTGCAGAAGATAAAAGTGTCCAGACTGATGAGGTAATCTACACCGCTGATCTCCAAGCCCTCCTCTTCCAGCTGCTAAAGCTCCAAGGGGGTGGCTTCCCTGGACTCCTTATTTCTTCTCCCCACCAATCCCAGGAATTGCCTTCAGCACAAGTTCCCAAAAAGGTTGAGGACTTGCCTGAAGCACAAAAACCAATCAAGAAAGAGGAGTTACCTGAAGCACAAGATGAAGTCAAAGATGTTTGCACCAACACTGCCCAAAACATTAACGATTCTGGTCTGGGCTTTTCTGAGCCGAAAATGAGTCCCCAGTTCATGGAAGAGCTGAATTTCGACTTGAAGAATCCCAAGAACACCTCTAGCATGGCAGTGGTGGGAAAAAGCCACTGGAGCAACAACTTCTTGGTGGATCTGGTTGCTGTGGCAGCACCCGTTCTGCCCACCGTGGCGTGGCTCTACTCGCAGCATGGTTTGGTAGGAGGGGCTCCTGTGTACAACATTGCAGCTTTAATTCGAGGCtgttgcattatgggattgcACTCGCTCCGCCATGTCTCTCATGGGCCAGATACTTAGTGGCCCTCACTCACAGTTACAGCAAGAGCACTTAAACATCATCTTCaaatagaaatgttgtttttgtacaCCTGtgatttatacatatacacttaTTTTCCGTTTAGTTGCAACATTCCTACTTTGCACTGTGTATTTTTGAGGCACAAAGGATGAAATTAAGGGGATGTTAAGGgacttgttttgtctttttttttgttatttattgcccttatgtttgtgtgtatataaatatttttgcacaatCTTTTCATCTGGGTGGGCAATTATGTTGCTCGTCTTGTTCTTTGCTGACTGCTATTccctgcttttctttttcttttttctttttttataagtCATTTAGAGTGGCAATAGGGGTTGACTGTCAGTTGGCCGTCGTTTTTGTTGTAGTTAAAATGTCACCCGTGTTCCAAAAGAACTAAAACCTTCTGCCAAAGCTTAAATGTGTTCAATATTTTGTGTTAAGTGAAACTGTATTTCTCTCCCTGAAATTAGAGCTTTTACATGTTGCTCTGTAAACTAACAATTTTCTGAAAGGCAGCACTTGTCACAGTAAAGCGAACACTTGTTATGTGCCTGAGCTAtgtgcaatatttttgtttatatcagatgtatatcattatatttattattaaagcatGGAAAACCCCTCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170039 lncRNA downstream 117223 21873826 ~ 21874051 (-) True G115170
TU170024 lncRNA downstream 165837 21825198 ~ 21825437 (-) True G115155
TU169974 lncRNA downstream 377095 21605980 ~ 21614179 (-) False cenpw
TU169954 lncRNA downstream 602127 21388815 ~ 21389147 (-) True G115098
TU169865 lncRNA downstream 659916 21331012 ~ 21331358 (-) True G115051
TU170171 lncRNA upstream 229185 22230240 ~ 22237066 (-) True G115262
TU170280 lncRNA upstream 682372 22683427 ~ 22683638 (-) True G115335
TU170525 lncRNA upstream 772711 22773766 ~ 22774032 (-) True G115496
TU170565 lncRNA upstream 884660 22885715 ~ 22888001 (-) True G115536
TU170567 lncRNA upstream 891051 22892106 ~ 22901138 (-) False cdc42se1
XM_043260810.1 mRNA downstream 8471 21974492 ~ 21982803 (-) True zdhhc3a
XM_043260809.1 mRNA downstream 8472 21972672 ~ 21982802 (-) False zdhhc3a
XM_043261479.1 mRNA downstream 20567 21968837 ~ 21970707 (-) True kiaa1143
XM_043261791.1 mRNA downstream 29783 21922962 ~ 21961491 (-) False osbpl10b
XM_043261389.1 mRNA upstream 86586 22087641 ~ 22089092 (-) True eny2
XM_043260245.1 mRNA upstream 123641 22124696 ~ 22129509 (-) True trhra
XM_043261302.1 mRNA upstream 178596 22179651 ~ 22208604 (-) True emc2
XM_043261301.1 mRNA upstream 178596 22179651 ~ 22208551 (-) False emc2
XM_043261610.1 mRNA upstream 329124 22330179 ~ 22332034 (-) True cd83
TU170105 other downstream 22739 21964855 ~ 21968535 (-) True G115207
TU170018 other downstream 187470 21801475 ~ 21803804 (-) True G115149
TU170010 other downstream 286315 21704018 ~ 21704959 (-) True G115141
TU169980 other downstream 430058 21560221 ~ 21561216 (-) False G115116
TU169979 other downstream 430214 21560221 ~ 21561060 (-) True G115116
TU170138 other upstream 86594 22087649 ~ 22089054 (-) False eny2
TU170599 other upstream 931572 22932627 ~ 22933967 (-) True G115554
TU171080 other upstream 1518753 23519808 ~ 23524382 (-) True G115882
XR_006252802.1 other upstream 1587130 23588185 ~ 23609841 (-) False usp45
TU171098 other upstream 1668843 23669898 ~ 23675298 (-) False mchr2a

Expression Profile