RNA id: XM_043261882.1



Basic Information


Item Value
RNA id XM_043261882.1
length 3714
RNA type mRNA
GC content 0.45
exon number 3
gene id si:ch211-79k12.2
representative True

Chromosome Information


Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 15641174 ~ 15646291 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TCCCGGAAATACTCTTCTGTCGATGGGGAAAAATGGCGTTATGAGCAGCTCCAGACTGTAGGAGAAGTAGGGCAGTAGAGTCAAGAGACAACAAATCACTACCCGCGGTTCTTggttttttcaaaatacagaaaCGTCCAACCTTACATTAATCAcaattgtgtattaatacaGTCGCGCGCTAGATTATGTAAGGGCGCTCCAGATGGACAAAGACAGACTCGCAGCTGGTCCATGCTCATGGCTGGATATGCATAATTTTATTGGTGACCTTATGGCTGCAAATACTCCGGTCACTGGTCATCCACTGAGAGAGCAGCGTACTGAGGAGACACTAAGTCCTGTTTGGCCCAAAGTCTCTCATCCTGCCCAGTCTACCCTGTCCAGACCGAGCCAGGTGAAAAGTGCTGTTCGGTTTGGTCTGCAGGAAAGGGAACCCAAAGATCATGAAAGCCATGTTCAGCATCGTGCCTGCACATGCCCTGGCTGCCCTCTGTCCTCATCTCCTTCCATTTCCTCAATCCACACCTTAAAACCCAGAACCATCCCGGTCTCACAGATCCAACCACCTTCCTCCCCACAACCCACCCCACCGCAGCAGAATAAAGAGCCCAGCTTAGGCCTGTGTCTAGGTTTGGGACTCTCTCTGGAAGAGGAAAACACAGAGCCCAGCAGCACACACCCCCAACAAGAGGACAAAGGCACTAGCACCCACAGCCCAATCCCTCAGGCAAATCCCGAGTCCCTACCAGTTCAAACCTTTCCGTGTCTTTGCTGCCACAGAGGGATTCAAACCTGCAGCCCACTTCTGTGCCAACAAAAGGACTCCGATGCACACGTTGCCCACCACCACtatcaccaccaccaccatcactGCCCGCTCAGCACCTGCACGCCATGTACGCTCCCGTCCTTCCCTTGCCTGACCTGCCAGCGCACCTTCCCCACCTGTGCCCAGCTCCTGCGCCATCAGCAGGGCCACGCGCAACAGGAGGGCTTGCAGCAGCTCTCGTGCATGCACTGCAATGCCTCTTTCCCCCGGCCATCGCAACTGCTCCAGCACCAGCGAACCCAGCATGCGTCAAAAACCGGCGGCTTCTTGTGTGCCGAATGCGGCCGCGCGTTCAACTCGCACAGCAACCTGCGCATCCACCTCAACGTACACACAGGCGCCCGTCCGTACAGCTGCTCCGAATGCGGCAAGAGCTTTAGCCAATCCGGGGCGCTTAAGATTCACCACCGAATCCACACCGGAGAAAGACCGTACACCTGCTCTTATTGCGGAAGAGGTTTCCCTCACTTAGCTGGGGTGAGAGCGCATCAGCGGATTCACACGGGAGAGAAACCGTACCGCTGCGGTCAGTGTGGGAAGTGCTTTACTCAGTCTGGGGCTCTGAAGATCCACACTCGCATACACACCGGCGAGAGGCCTTTCGTGTGCGGCCTCTGTGGGAAGAGCTTTTCAAATCGTTCCGGTATTCGCTTTCATCACCGCACGGTTCACGGGATCGTGACGGAGCCCAACTCTGTGGGAAGGCCTAGCCTGGTTGCCTCTGCGTCCTCCTCAGTTTCAGACTTCCAGAGAATTCAAGCCTCCGGTCCCAACCAGATTCATCTTCGGGAATTGGAAGATAGGGGTCCACCCAGTAAAGAGCAGTTAAGAGGGGATAGGGGCAAAGATGCCCTTCCGTATGCCTGCGAGGACTGCGGTCAGCGGTTTCCAGACGCTCCGTCTAGAAACAGACACCAGACGTTGCAACACTACTCTAAGGAAGACAGAGAAAAGGAAGCGAGCAGCTCTGACAAAACTATAAATTAGACAAAAGCAGATGCTGAGCCTCTTTGAAGCTTGCTGATATTATCACACCGTTAAGTCATGACATAAGAAATATTGATTGTGTCCAACCAAGAGTGTACAGCACAGTCTTCAGGCTCATGGTGTCCAGGACACcagcattttaatgatttataaaagaTGAATCATTGTCTAGCCATCTGAGATTTCGGTATAGATATAAAGGTCAggattatgatttttttttgttattattgcagCACGCTATGAGTGTACTGAACATTACCACCATTTGTTGTTTGCTTTTGACAATTGATAGAGTGTTTGGACCCAGAAATGGTGGCTTGTGACGTCAGACCTAACGGTCTTGTTTTGGTCATGTAAAATTCTTATGCCTGTTATTCGTGCCtcttaaaaaagctaaattgtgATAACCTGTATAGTGAAAACGCACCTTAAACTTTAAATAAGTAGCTTTACCTATCAGTATTAAGGtatttgtgcatatttgttACCAAACCTGCACTACTTTTTCCACCATTGGGCCTAAAGGTTACCAGAAAGCAAACAGAAGGCTTGGTTTACAAAACTCGCGAGTTTCAGTGTCACCAAAGCCATTTAACCAGCATCATTCTCTTGGCCTGAGGACGTTTAGCTAGATGTGCCGataaatccaaaaatgtaatggttTGTACTTAATGCAACTGCCACAACTGGTACTGCTTACAACCATGCAGCCTGATAGTGgaaaagtgctttattttacattttggcactttgtacatatgtatgtaaaaGTATTTTGCAGGTTTGCAAGTTGTTATTTTAAgcttattatatttctttttagtttaaCAAACTTCTGATGCTGTTTCTATAGTGAACTGGATTAAGAAAGGTGCTTATTGGAATGTGGCACGGTGGTTCAGAAGGTATAATAGTTACCTCGCAGGATGAAGGTTTGAGCTTGGGTCTTTCTGTGGAGTTTGCATGTTCTCCACATGTTACGAGGAGATTCCTCTTGGTGCTCTGATTTCCCCTCAGTCTAAAGACATATAGGTTAACTGGAGAAGATAAATTGTCTGAAGGCGCGAATGTGTCTCTATGGTGGATTGTCTTGAGTATTTCCAAAGCCTGTGGCCCAATATAAATGGTTGTGATTGCTTTCTTAGTAAGTGCGAAAATTGCCTGAAGTCTGAAATTGACAGAGCACATTTTTCTGCTAACATAGCAGTGCcttttttaatagaaatcttCTTAATAGGAATCTTGAAAAGCACAtacaaattaaagcaaaaacattagattatgactttaaaagttaaaatcaaatataGTCTTTAAGATTATTTGTCAGACCCTAGTGTGGTTGTaatattaatgctgttttaaatgaaacaatgctcttactgtatttaaagtcAGTTCAGCTTGTTGTATGGGGATACATTCTATGACACTATTAGCATATTTGATGTACCTGCCAGGTGTTGCTTATTGTATTTTTGGAGTCTGCAGGGACTGACAGTACACAAGACTGCATAAGCGTCTGCCGTTGTAAGGGATTGGCCAAAGGTTTGTTGTTAAAGATACCTGTAAATACCTTGCATTACTGCTTAGAATTAAATATTGACAAAACTGTCAGAGGAAATTAATTGtctattatttttgtgttcattttgtatCTTTAGAATTACACTGTTGATATGTGAACCCTTCTTAATGCGGTATTGCAAATGTTATTGGCCGGTCAATGGCCCCTCAACCCAGAACATCAGATACTTTTTGTACGTCTGTCAGTTAGCTCAATACAATAGTCCACAATACATGTATATCGTGTACACATGTTTCAACAGAAATAAACGTTGATGTAACTTATTTGAAGTTTACATTTCAAGAGATTAAAAAGTTCAACTTTG

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU167042 lncRNA downstream 212512 15413946 ~ 15428662 (-) False G113136
TU167091 lncRNA downstream 220747 15418906 ~ 15420427 (-) True G113151
TU167092 lncRNA downstream 220747 15418906 ~ 15420427 (-) False G113151
TU167055 lncRNA downstream 228331 15407948 ~ 15412843 (-) True G113139
TU167043 lncRNA downstream 230161 15409331 ~ 15411013 (-) False G113136
TU167104 lncRNA upstream 18945 15665236 ~ 15672119 (-) False fxyd6l
TU167105 lncRNA upstream 18945 15665236 ~ 15672119 (-) False fxyd6l
TU167106 lncRNA upstream 18945 15665236 ~ 15672119 (-) False fxyd6l
TU167107 lncRNA upstream 18945 15665236 ~ 15671011 (-) False fxyd6l
TU167108 lncRNA upstream 18945 15665236 ~ 15672119 (-) False fxyd6l
XM_043260918.1 mRNA downstream 1286 15630541 ~ 15639888 (-) True si:ch211-79k12.1
XM_043261113.1 mRNA downstream 14065 15506059 ~ 15627109 (-) False cadm4
XM_043261112.1 mRNA downstream 94732 15506059 ~ 15546442 (-) True cadm4
XM_043261114.1 mRNA downstream 94736 15506059 ~ 15546438 (-) False cadm4
XM_043260093.1 mRNA downstream 144761 15492948 ~ 15496413 (-) False rps19
XM_043261019.1 mRNA upstream 13461 15659752 ~ 15666045 (-) True fxyd6l
XM_043261037.1 mRNA upstream 14643 15660934 ~ 15666045 (-) False fxyd6l
XM_043261026.1 mRNA upstream 18945 15665236 ~ 15672151 (-) False fxyd6l
XM_043261035.1 mRNA upstream 18945 15665236 ~ 15672148 (-) False fxyd6l
XM_043261025.1 mRNA upstream 18945 15665236 ~ 15672147 (-) False fxyd6l
TU167048 other downstream 144799 15468480 ~ 15496375 (-) False rps19
TU167050 other downstream 144799 15468480 ~ 15496375 (-) False rps19
TU167049 other downstream 144799 15492821 ~ 15496375 (-) True rps19
TU167051 other downstream 145452 15468480 ~ 15495722 (-) False rps19
XR_006252733.1 other downstream 727528 14909325 ~ 14913646 (-) False LOC122359907
TU167155 other upstream 170688 15816979 ~ 15819086 (-) True G113203
TU167180 other upstream 211308 15857599 ~ 15861893 (-) True G113220
TU167269 other upstream 366673 16012964 ~ 16013751 (-) True G113275
TU167253 other upstream 493028 16139319 ~ 16141235 (-) True G113267
XR_006252800.1 other upstream 572370 16218661 ~ 16228466 (-) False atxn1b

Expression Profile


XM_043261882.1 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 20.
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XM_043261882.1 Expression in each Bioproject

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XM_043261882.1 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 125.
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