RNA id: XM_043261883.1


Basic Information

Item Value
RNA id XM_043261883.1
length 3702
RNA type mRNA
GC content 0.45
exon number 3
gene id si:ch211-79k12.2
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 15641174 ~ 15646291 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTAGCCTTAAAAGGGGCGTGTAATGTGTTTCATGGCTTGAAGAAATAGCCTACCAAAGGCGACAAAAACGCAGACGGAAGCTCTTTATTGGCGTACCTGTATTTAACAGCGCAGCGATACGGATCGatggaaatgttttgttatttagtaCGATGTATCGCTTGATATCGTACGCTCAACGCTTGTATAGCATCTTGTTACGCGTACCTAAAGGCTGGTCCATGCTCATGGCTGGATATGCATAATTTTATTGGTGACCTTATGGCTGCAAATACTCCGGTCACTGGTCATCCACTGAGAGAGCAGCGTACTGAGGAGACACTAAGTCCTGTTTGGCCCAAAGTCTCTCATCCTGCCCAGTCTACCCTGTCCAGACCGAGCCAGGTGAAAAGTGCTGTTCGGTTTGGTCTGCAGGAAAGGGAACCCAAAGATCATGAAAGCCATGTTCAGCATCGTGCCTGCACATGCCCTGGCTGCCCTCTGTCCTCATCTCCTTCCATTTCCTCAATCCACACCTTAAAACCCAGAACCATCCCGGTCTCACAGATCCAACCACCTTCCTCCCCACAACCCACCCCACCGCAGCAGAATAAAGAGCCCAGCTTAGGCCTGTGTCTAGGTTTGGGACTCTCTCTGGAAGAGGAAAACACAGAGCCCAGCAGCACACACCCCCAACAAGAGGACAAAGGCACTAGCACCCACAGCCCAATCCCTCAGGCAAATCCCGAGTCCCTACCAGTTCAAACCTTTCCGTGTCTTTGCTGCCACAGAGGGATTCAAACCTGCAGCCCACTTCTGTGCCAACAAAAGGACTCCGATGCACACGTTGCCCACCACCACtatcaccaccaccaccatcactGCCCGCTCAGCACCTGCACGCCATGTACGCTCCCGTCCTTCCCTTGCCTGACCTGCCAGCGCACCTTCCCCACCTGTGCCCAGCTCCTGCGCCATCAGCAGGGCCACGCGCAACAGGAGGGCTTGCAGCAGCTCTCGTGCATGCACTGCAATGCCTCTTTCCCCCGGCCATCGCAACTGCTCCAGCACCAGCGAACCCAGCATGCGTCAAAAACCGGCGGCTTCTTGTGTGCCGAATGCGGCCGCGCGTTCAACTCGCACAGCAACCTGCGCATCCACCTCAACGTACACACAGGCGCCCGTCCGTACAGCTGCTCCGAATGCGGCAAGAGCTTTAGCCAATCCGGGGCGCTTAAGATTCACCACCGAATCCACACCGGAGAAAGACCGTACACCTGCTCTTATTGCGGAAGAGGTTTCCCTCACTTAGCTGGGGTGAGAGCGCATCAGCGGATTCACACGGGAGAGAAACCGTACCGCTGCGGTCAGTGTGGGAAGTGCTTTACTCAGTCTGGGGCTCTGAAGATCCACACTCGCATACACACCGGCGAGAGGCCTTTCGTGTGCGGCCTCTGTGGGAAGAGCTTTTCAAATCGTTCCGGTATTCGCTTTCATCACCGCACGGTTCACGGGATCGTGACGGAGCCCAACTCTGTGGGAAGGCCTAGCCTGGTTGCCTCTGCGTCCTCCTCAGTTTCAGACTTCCAGAGAATTCAAGCCTCCGGTCCCAACCAGATTCATCTTCGGGAATTGGAAGATAGGGGTCCACCCAGTAAAGAGCAGTTAAGAGGGGATAGGGGCAAAGATGCCCTTCCGTATGCCTGCGAGGACTGCGGTCAGCGGTTTCCAGACGCTCCGTCTAGAAACAGACACCAGACGTTGCAACACTACTCTAAGGAAGACAGAGAAAAGGAAGCGAGCAGCTCTGACAAAACTATAAATTAGACAAAAGCAGATGCTGAGCCTCTTTGAAGCTTGCTGATATTATCACACCGTTAAGTCATGACATAAGAAATATTGATTGTGTCCAACCAAGAGTGTACAGCACAGTCTTCAGGCTCATGGTGTCCAGGACACcagcattttaatgatttataaaagaTGAATCATTGTCTAGCCATCTGAGATTTCGGTATAGATATAAAGGTCAggattatgatttttttttgttattattgcagCACGCTATGAGTGTACTGAACATTACCACCATTTGTTGTTTGCTTTTGACAATTGATAGAGTGTTTGGACCCAGAAATGGTGGCTTGTGACGTCAGACCTAACGGTCTTGTTTTGGTCATGTAAAATTCTTATGCCTGTTATTCGTGCCtcttaaaaaagctaaattgtgATAACCTGTATAGTGAAAACGCACCTTAAACTTTAAATAAGTAGCTTTACCTATCAGTATTAAGGtatttgtgcatatttgttACCAAACCTGCACTACTTTTTCCACCATTGGGCCTAAAGGTTACCAGAAAGCAAACAGAAGGCTTGGTTTACAAAACTCGCGAGTTTCAGTGTCACCAAAGCCATTTAACCAGCATCATTCTCTTGGCCTGAGGACGTTTAGCTAGATGTGCCGataaatccaaaaatgtaatggttTGTACTTAATGCAACTGCCACAACTGGTACTGCTTACAACCATGCAGCCTGATAGTGgaaaagtgctttattttacattttggcactttgtacatatgtatgtaaaaGTATTTTGCAGGTTTGCAAGTTGTTATTTTAAgcttattatatttctttttagtttaaCAAACTTCTGATGCTGTTTCTATAGTGAACTGGATTAAGAAAGGTGCTTATTGGAATGTGGCACGGTGGTTCAGAAGGTATAATAGTTACCTCGCAGGATGAAGGTTTGAGCTTGGGTCTTTCTGTGGAGTTTGCATGTTCTCCACATGTTACGAGGAGATTCCTCTTGGTGCTCTGATTTCCCCTCAGTCTAAAGACATATAGGTTAACTGGAGAAGATAAATTGTCTGAAGGCGCGAATGTGTCTCTATGGTGGATTGTCTTGAGTATTTCCAAAGCCTGTGGCCCAATATAAATGGTTGTGATTGCTTTCTTAGTAAGTGCGAAAATTGCCTGAAGTCTGAAATTGACAGAGCACATTTTTCTGCTAACATAGCAGTGCcttttttaatagaaatcttCTTAATAGGAATCTTGAAAAGCACAtacaaattaaagcaaaaacattagattatgactttaaaagttaaaatcaaatataGTCTTTAAGATTATTTGTCAGACCCTAGTGTGGTTGTaatattaatgctgttttaaatgaaacaatgctcttactgtatttaaagtcAGTTCAGCTTGTTGTATGGGGATACATTCTATGACACTATTAGCATATTTGATGTACCTGCCAGGTGTTGCTTATTGTATTTTTGGAGTCTGCAGGGACTGACAGTACACAAGACTGCATAAGCGTCTGCCGTTGTAAGGGATTGGCCAAAGGTTTGTTGTTAAAGATACCTGTAAATACCTTGCATTACTGCTTAGAATTAAATATTGACAAAACTGTCAGAGGAAATTAATTGtctattatttttgtgttcattttgtatCTTTAGAATTACACTGTTGATATGTGAACCCTTCTTAATGCGGTATTGCAAATGTTATTGGCCGGTCAATGGCCCCTCAACCCAGAACATCAGATACTTTTTGTACGTCTGTCAGTTAGCTCAATACAATAGTCCACAATACATGTATATCGTGTACACATGTTTCAACAGAAATAAACGTTGATGTAACTTATTTGAAGTTTACATTTCAAGAGATTAAAAAGTTCAACTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167042 lncRNA downstream 212512 15413946 ~ 15428662 (-) False G113136
TU167091 lncRNA downstream 220747 15418906 ~ 15420427 (-) True G113151
TU167092 lncRNA downstream 220747 15418906 ~ 15420427 (-) False G113151
TU167055 lncRNA downstream 228331 15407948 ~ 15412843 (-) True G113139
TU167043 lncRNA downstream 230161 15409331 ~ 15411013 (-) False G113136
TU167104 lncRNA upstream 19200 15665236 ~ 15672119 (-) False fxyd6l
TU167105 lncRNA upstream 19200 15665236 ~ 15672119 (-) False fxyd6l
TU167106 lncRNA upstream 19200 15665236 ~ 15672119 (-) False fxyd6l
TU167107 lncRNA upstream 19200 15665236 ~ 15671011 (-) False fxyd6l
TU167108 lncRNA upstream 19200 15665236 ~ 15672119 (-) False fxyd6l
XM_043260918.1 mRNA downstream 1286 15630541 ~ 15639888 (-) True si:ch211-79k12.1
XM_043261113.1 mRNA downstream 14065 15506059 ~ 15627109 (-) False cadm4
XM_043261112.1 mRNA downstream 94732 15506059 ~ 15546442 (-) True cadm4
XM_043261114.1 mRNA downstream 94736 15506059 ~ 15546438 (-) False cadm4
XM_043260093.1 mRNA downstream 144761 15492948 ~ 15496413 (-) False rps19
XM_043261019.1 mRNA upstream 13716 15659752 ~ 15666045 (-) True fxyd6l
XM_043261037.1 mRNA upstream 14898 15660934 ~ 15666045 (-) False fxyd6l
XM_043261026.1 mRNA upstream 19200 15665236 ~ 15672151 (-) False fxyd6l
XM_043261035.1 mRNA upstream 19200 15665236 ~ 15672148 (-) False fxyd6l
XM_043261025.1 mRNA upstream 19200 15665236 ~ 15672147 (-) False fxyd6l
TU167048 other downstream 144799 15468480 ~ 15496375 (-) False rps19
TU167050 other downstream 144799 15468480 ~ 15496375 (-) False rps19
TU167049 other downstream 144799 15492821 ~ 15496375 (-) True rps19
TU167051 other downstream 145452 15468480 ~ 15495722 (-) False rps19
XR_006252733.1 other downstream 727528 14909325 ~ 14913646 (-) False LOC122359907
TU167155 other upstream 170943 15816979 ~ 15819086 (-) True G113203
TU167180 other upstream 211563 15857599 ~ 15861893 (-) True G113220
TU167269 other upstream 366928 16012964 ~ 16013751 (-) True G113275
TU167253 other upstream 493283 16139319 ~ 16141235 (-) True G113267
XR_006252800.1 other upstream 572625 16218661 ~ 16228466 (-) False atxn1b

Expression Profile