RNA id: XM_043261922.1


Basic Information

Item Value
RNA id XM_043261922.1
length 9067
RNA type mRNA
GC content 0.57
exon number 57
gene id ubr5
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 26822157 ~ 26868971 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAGAAGCTTAAACAGAGTTAAGATGGCGGCATGTGGATGAGGAGGTTGTATATTTCAGCTCTTCGGTTGCGCTCGGCGAAGAAAACACACGTTCTCGAACCTAACCcctaaagaaaagagaaaagcccCCCGCAAAATCATTTACTCTGGACCGAGCCCATGACGTCCATTCACTTCGTGGTCCACCCGTTACCCGGGACCGAAGACCAACTAAATGACAGGCTCCGCGAAGTGTCGGAAAAGCTCAACAAATACAACTGTAACAGTCATCCACACCTTATTCCATTGGAGCAGGCCAAACTTAAGCAGTGTGTGGTTGGACCAAATCATGCTGGATTTCTCCTTGAGGATGGACGTATCTGCAGGATAAACTTTGCCGTCCAGCCCGACCGACTGGAACTCGGCAAGCCCGATGGCAATGATGGGAGCCGCTGGAGTTCAGGAGTAAATGGCGGTGGCAGCGGAGGTGGAGGCAGCAGCGGCGGAGGCGCGGGAGGCGGCAGCGGGAGCGGAgggggtggaggaggaggaggaggtgccGGAGGAGGAGGATCTTCAGGCCGGTCCTCCACAGCAGCCCGTGATTCACGCAGACAGACCCGCGTGATCCGCACTGGCAGAGATCGAGGCTCAGGCCTGCTGGGCAGTCAGCCACAGCCCGTAATTCCAGCATCCGTCATCCCAGAGGAGCTCATCTCTCAGGCCCAGGTGGTTCTCCAGGGGAAGTCCAGGAGTGTCATCATTCGAGAGCTGCAGCGCACAAACCTTGACGTAAACTTGGCTGTAAACAACCTGCTGAGCAGAGATGACGAGGACGGGGACGACGGAGACGACACGGCCAGCGAGTCCTACTTACCTGGAGAAGACTTGATGTCACTGCTAGATGCGGACATTCACTCGGCTCACCCCAGCGTGATCATTGACGCGGACGCCATGTTCTCTGAGGACATCAGCTACTTTGGCTACCCCTCTTTCCGACGCTCTTCTCTGTCTCGTCTCGGCTCTTCACGAGTTCTCCTTCTCCCCCTAGAGCGAGACTCCGAATTGCTCCGCGAGCGGGAGTCGGTCCTGAGGCTGCGCGAGAGGAGGTGGCTGGATGGAGCCTCCTTCGACGCGGAGCGTGGCTCCACCAGCCGCGAGGGAGAGCCCAGCCTTGACAAGAAGAGCGTGCCTCTGCAGAGCCCTGTCACTCTGGGCGAAGAGCTCCAGTGGTGGCCTGATAAGGACTATGTAACTAAGTTTGTCAGCATTGGGGCTTTGTACTCGGAGATGGTTGCCGTCAGTACCAAAGGTGAACTGTACCAGTGGAAGTGGAATGAGCCTGAACCTTACAGAAACGCACAAAATCCTTCGATACATCACCCTCGTGTCCCTTTCCTGGGCTTGACCAATGAAAAGATCACCCACCTGTCTGCCAACAGCATCCGAGCCACTGTGGCCACCGAAAGCAACAAGGTGGCGACATGGGTGGATGAAACTCTGAGCACTGTCGCTGCTAAACTAGAACACGGCGCACAAACGTTTCCGGAGCTGCAGGGAGAGCGTATCATCTCTCTGCACTGCTGCGCCCTGTACACCTGCGCCCAGCTGGAGAGCAGCCTTTACTGGTGGGGTGTCGTGCCTTTCAGTCAGCGGAAAAAGATGCTTGAAAAGGCCAGAGCCAAGAACAAGAAGCCAAAGTCCAGTGCAGGCATCTCTTCTATACCCAACATCACTGTAGGAACTCAGGTGTGCCTGAGGAATAACCCTCTATATCACGCTGGTGCCGTGGCCTTCTCCGTTAACGCCGGGATCCCTAAAGTTGGCGTTCTGCTGGAGTCCGTGTGGAACATGAACGACAGCTGCCGCTTCCAGCTCCGCTCGCCCGAGAGCCTGAAGAACATGGAGAAGAACACCAAGACGCAGGAGATCAAGACGGAGAGTAAGCCGGAGCTGGTGAAGACGGAAATGGGCCCTCCGCCCTCGCCGGCGTCCACATGCAGTGACACTTCCTCCATCGCCAGCAGTGCTTCTCTGCCCTACAAGCGAAGACGCTCAACTCCGGCTCcaaaggaggaggagaaagtCAATGAGGAGCAGTGGCCTCTACGAGAGGTCGTTTTCGTGGAGGACGTTAAAAACGTCCCCGTGGGAAAGGTGCTAAAAGTCGATGGTGCATATGTTGCTGTGAAATTTCCAGGGACGTCGAGCAGCGTGAGCAGCCAGAGCGCAGCTCCCACTGACTCTGACCCCTCCTCACTGCTGCAAGACTGTCGCCTGCTCAGAATAGATGAGCTACAGGTTGTTAAAACTGGTGGAACGCCAAAAGTTCCAGACTGTTTTCAGCGCACTCCTAAAAAACTTTGTATCCCagaaaaagctgaaattttAGCTGTGAATGTTGACTCCAAAGGAGTTCATGCTGTGTTGAAAACGGGCAGCTGGGTACGGTACTGTGTCTTTGACTTGGCCACCGGCAAAGCCGAGCAGGAGAATCACTTCCCCACTAGTAATCTGGCCTTTCTGGGCCAGAGTGAGCGTAACGTGGCCATCTTTACTGCTGGCCAGGAGAGCCCAATCATTTTGAGGGATGGTAATGGCACCATTTATCCCATGGCTAAAGACTGTATGGGTGGAATACGCGACCCTGATTGGCTGGACCTCCCTCCTATTGCCAGTCTAGGCATGGGAGTTCATTCGCTTGTCAACCTTCCCAGTAACTCCACAATCAAAAAGAAAGCAGCCATCATCATCATGGCTGTGGAGAAGCAGACGCTGATGCAGCACGTGCTGCGCTGCGATTACGAGGCCTGCAGGCAGTACCTGATCAGCCTGGAGCAGGCCATGCTGCTGGAGCAGAACCCTCACGCTCTGGACGCTCTTCTGGGTCACCGCTGTGACGGCAACCGCAACGTCCTCCACGCCTGCGTCTCCGTCTGCTTCCCCGTCAGCAACAAGGAAACAAAGGAGGAGGAAGAAGCAGAGCGGTCCGAGAGGAACACGTTTGCTGAGAGGCTGTCAGCCGTCGAGGCCATCGCCAATGCCATTTCAGTGGTGTCCAGCAACAGCTCTGGGAACCGCACGGGATCGTCCAGCAGCCGGGGCTTGCGTTTGAGGGAGATGATGAGACGCTCCCTCCGCGCTGCCGGTTTGGGCCGCCACGAATCTGGCCCTTCCTCCAGTGACCACCAAGACCCGGTTTCACCCCCCATCGCCCCTCCCAGCTGGGTACCGGACCCTCCACCAATGGATCCCGACGGTGACATTGATTTCATTTTGGCCCCTGCGGTGGGCTCCCTTACCACTGCTTCCACAGGCACTAACCAGGGACCCAGCACTTCCACCATCCCAGGACCTTCTTCTGAACCATCAGTAGTGGAGTCTAAAGACCGCAAAGCCAACGCTCACCTGATACTGAAGCTGATGTGTGACAGCGTCGTCCTGCGACCTCATTTGAGAGAGCTGCTCTCTGCCAAGGATGCTCGTGGCATGACTCCATTCATGTTGGCGGTGAGCGGGAGAGCTTACCCAGCAGCCATTACTGTTTTAGAAGCGGCACAGAAAATAGCCAAAGGCGAACCTGGTCTTGGAGAGAAAGAGGATGCAGCGTCTGTGTTCATGGAGATGATCTGTCCTTCAGGAACTAATCCGGACGACTCTCCCCTCTACGTTCTGTGCTGTAACGATACCTGCAGCTTCACCTGGACCGGAGCTGAACACATCAACCAGGACATCTTTGAGTGCAGAACATGCGGCCTGCTGGAGTCTCTGTGCTGCTGCACCGAATGCGCCAGGGTTTGTCACAAAGGTCACGACTGCAAACTGAAGCGGACGTCTCCCACCGCGTACTGTGACTGCTGGGAGAAGTGTAAATGCAAGACCCTCATCGCGGGCCAGAAAGCAGCTCGTCTAGATCTGCTCTACAGGCTGCTGACCACCACTAATTTAGTTACCACTCCTAACAGCAGGGGAGAGCACATCTTGCTGTTTCTGGTGCAGACCGTTGCGAGGCAGAGCGTGGAGCATTGCCAGTACCGACCGCCTCGCATTCGAGAGGACAGGAACCGGAAGGCCGCCAGCGCTGAAGACTCGGATATGCCGGATCATGACCTGGAGCCTCCTCGCTTCGCGCAGCTGGCTCTCGAGCGCGTGTTGCAGGACTGGAACGCTCTGAAATCCATGATAATGTTCGGCTCTCAGGAAAACAAAGACCCACTAAGTGCCAGCAGCAGAATCGCTCACCTTTTGCCAGAGGAGCAGATGTACCTGAACCAGCAGAGCGGCACCATCAGGCTGGATTGTTTCACACATTGCCTCATTGTCAAGTGTGCGCCAGACATCACTTTTATTGACACGCTGTTGGGGACCCTGGTGAAGGAGCTGCAGAATAAATACACTCCTGGGCGAAGAGAGGAGGCCATCAACGTCACGCGCAGGTTCCTGCGCTCCGTGGCCCGGGTTTTTGTCATCCTCAGTGTGGAGATGGCGTCCTCCAAGAAGAAAAATAACTTCATCCCGCAGCCCATCGGGAAGTGCAGGCGTGTTTTTCAGGCTCTGTTGCCGTACGCAGTAGAAGAGCTCTGCAACGTGGCCGAGTCCCTGATCGTGCCGGTGCGGATGGGCATCGCTCGCCCCACAGCGCCCTTCACCCTGGCCAGTACCAGCATCGACGCCGTTCAGGGCAGCGAGGAGCTCTTCTCTGTGGAGCCCCTGCCGCCGCGACCCTCCCCGGATCAGTCCAGCAGCTCCAGTCAGTCGGCCTCTTCTTACATTATCAGGAACCCTCAGCCCCGCCGCAGCAGCCAGTCCCAGACGGCCCGCGGCCGCGACGAGGAGCAGGATGATATTGTTTCTGCAGACGTAGAAGAGGTGGAGGTTGTGGAGGGCGTTGCAGGCGAGGAGGATCACCATGACGACCAGGAGGAGCAGGGCGAGGAGAACGCGGAGGCCGAAGGGCAGCACGATGAACACGACGAAGATGGGAGCGACATGGAGCTGGATTTATTGGCTGCCGCTGAGACCGAGAGCGACAGCGAGAGTAACCATAGCAACCAAGACAATGCCAGCGGCCGCAGGAGCGTTGTGACCGCCGCCACCGCTGGATCTGAAGCAGGTGCCAGCAGCGTTCCTGCTTTCTTCTCCGAGGACGACTCCCAGTCGAACGACTCCAGTGACTCggacagcagcagcagtcagAGTGACGACGTGGATCAGGAGACGTTTTTGTTGGACGAGCCTTTAGAGAGAACCACAGGCTCGGCGCACGCTAACAGTGCCGCCCAGGCGCCGCGGTCCATGCAGTGGGCTGTTCGCACGACACCCAGCCAGCGCTCGGCCGGCGGCGCCCCGTCCAGCTCCTCCACTCCCGCTGCGAGCTCCACGGGCCTCATCTACATCGATCCGTCAAACCTGCGCCGCAGCAGCGCCATCAGCACGAGCGCAGCGGCCGCCGCAGCCGCCCTGGAGGCCAGCAACTCCAGCAGCTACCTGACGTCCGCCAGCAGCCTGGCTCGAGCCTACAGCATCGTCATCCGCCAGATCTCAGACCTCATGAGCCTCATCCCCAAATACAACCACCTGGTCTACTCGCAGTACCCTGCCGCCGTCAAGCTCACCTATCAGGACGCCGTCAACCTGCAGAACTTCGTGGAGGACAAGTTGATCCCCACCTGGAACTGGATGGTGTCCATCATGGATTCCACTGAAGCGCAGCTGCGTTACGGCTCGGCTCTGTCTTCAGCCGGGGATCCCGGTCACCCGAGCCACCCGCTGCACGCTTCGCAGCACGCCGGCCGCCGGGAGCGCATGACGCCGCGAGAGGAGGCCAGTCTCCGCACCCTCGAAGGGCGAAGGCGCGCCGCGACGCTTTTGACGGCTCGTCAGGGGATGATGTCGGCTCGAGGAGACTTCCTGAACTATGCTCTGTCTCTGATGCGTTCTCATAATGACGAGCATTCGGACGTTCTGCCTGTGCTGGACGTGTGTTCGCTCAAACACGTGGCTTACGTCTTCCAGGCCCTCATCTACTGGATTAAAGCCATGAATCTGCAGACCACGCTCGACACCACTCAGATTGACCGGAAGAGGAATCGTGAGCTGCTGGAGCTCGGCCTGGACAATGAGGACTCTGAGCACGAGAACGACGAGGACACCAATCAGAGCTCCACCCTGCAGGACAAGGACGAGGAGTCGGTCCCTGCTGAGACCGGACAGCACCATCCGTTTTTCCGCCGCTCGGACTCCATGACCTTCCTGGGGTGCATCCCTCCCAACCCGTTCGAAGTGCCCCTCGCCGAAGCCATTCCTCTGGCTGACCAGCCGCATCTCCTGCAGCCTAATGCCAGAAAAGAGGACTTGTTTGGACGACCAAGTCAGGGTCTATATTCATCTTCATACATGGCCAGTAAAGGCCTGACGGATCTGACTGTGGACATGAATTGCTTGCAGATTCTACCCACAAAGATGTCGTATTCGGCGAACATGAAGAACGTGATGAGTATGGAGTCTCGGCAGAGGGGTGGCGAGGAGCAGCCGGCAGCGGAGCAGGACATGGATGCGTCCAAACCAGGCCCTTCTCCTCACGATCTGGCGGCCCAGTTAAAGAGCAGCCTGCTCGCAGAGATTGGTTTGACGGAGAGCGACGGCCCGCCGCTTCCCACGTTCATCCCACACTGCAGCTTTATGGGGATGGTGATCTCTCACGATATGTTGCTGGGCCGCTGGCGGCTTTCTCTCGAGCTCTTCGGTCGTGTTTTCATGGAGGACGTGGGAGCAGAACCGGGATCTATCCTGACTGAACTGGGCGGCTTCGAGGTGAAGGAGTCCAAGTTCCGGCGTGAGATGGAGAAGCTGAGGAACCTGCAGTCCCGGGATCTGGCCCTGGAGGTGGACCGCGACCGAGAGCAGCTCATCCAGCAGACCATGCGGCAGATCAACGCTCACTTCGGCCGCCGCTGCACCACTACACCCATGGCAGTGCACCGCGTCAAAGTCACTTTCAAGGATGAACCCGGAGAGGGCAGCGGAGTGGCCCGCAGCTTTTACACGGCCATCGCTCAGGCCTTCCTCTCCAACGACAAGCTGCCCAATCTGGACTGTGTTCAGAGCGTTAGCAAGGGAATGCAGGCTAGCAATCTTATGCAGCGGCTGAGGAACCGAGACCGTGAGCGGGAGAGGAGGAGCGGAGGATTGAGAGCTGCTTCTAGACGAGACCGTGACAGggACTCGAGGAGACAGCTGTCGATCGACACGCGGCCGTTCAGACCTGCATCAGAAGGGAACCCGAGCGATGAACCGGAGCCGCTGCCAGCTCACAGACAAGCGCTCGGAGAGAGACTGTACCCGCGGGTGCATGCCATGCAGCCGGCTTTTGCCAGTAAAATCACGGGGATGCTGCTGGAGCTGTCTCCCGctcagctgctgctgctcctggCCAGTGAGGACTCGCTCAGAGCCCGAGTGGAAGAGGCCATGGAGCTCCTCATCACTCACGGAAGgGAAAATGGAGCTGACAGTATACTGGACCTTGGCCTCCTCGACACTCCTGAAAAAGCACAGCAGGAGAACCGGAAGAGGCACGGTTCGACCCGCAGTGTGGTGGACATGGAGCTGGATGACCCAGACGACGGGGATGATAATGCTCCTCTGTTCTACCAGCCCGGCAAGAGGGGTTTTTACTCGCCCCGTCCAGGCAAGAACACCGAGGCCAGGCTAAACTGCTTCCGTAACATCGGCCGGATACTTGGCTTGTGTCTGTTACAGAATGAGCTTTGCCCCATCACACTCAACAGACATGTCATCAAGGTGCTGCTTGGCAGGAAGGTAAACTGGCACGATTTTGCCTTCTTCGACCCGGTGATGTACGAGAGTCTGCGGCAGCTGATCCGTCACTCTCAAACTGAGGAGGCAGAGGCTGTGTTTGCAGCGATGGACCTGGCCTTTGCTATCGACCTCTGCAAGGAGGAAGGCTCCGGACAGGTGGAGCTCCTGTCCGGTGGGGTCAACATGCCCGTGACTCCTCTGAACGTGTACGAGTACGTGAGGAGATACGCCGAGCACCGGATGCTGGTGGTGGCCGAACAGCCTCTGCACGCCATGAGGAAGGGTCTTCTGGACGTGCTTCCCAAGAACGCTCTGGAGGACCTGACGGCCGAGGACTTCAGACTGCTGGTCAACGGCTGTGGAGAAGTCAACGTCCAGATGCTCATTAGTTTCACCTCTTTCAATGACGAGTCGGGTGAGAACGCAGAGAAGCTGCTGCAGTTCAAGCGCTGGTTCTGGTCCATCGTCGAGAAGATGAGCATGACGGAGCGGCAGGACCTgGTGTACTTCTGGACGTCCAGCCCGTCTCTGCCGGCCAGCGAGGAAGGATTCCAGCCCATGCCCTCCATCACCATCCGGCCGCCGGACGACCAGCACCTGCCCACCGCCAACACCTGCATCTCCCGCCTCTACGTGCCACTTTACTCCTCCAAACAGATCCTCAAACAGAAACTCTTACTAGCCATCAAGACCAAGAACTTCGGTTTCGTGTAGTCGAGCGAAACCCGTTTAATCGTCGTGTAATATTACTAGTTCCatttttgtagatttattttttgtctatacaattttatgaaattcgggaaaaaaaaaaaaaaaaaaaaaaaaaaagcgtctcGTCCTGGCGgccttttggttttttttttttgttggttttttttccctttcgcCCGCGTTGCAAACGTCGGACGGCTTTGTTCttattttctcttcatttttttatttccgttATCCGAGTATGACGCAACATTCCTGCATTGGCTCTCGTAAAGTTGAAGCCTGCAGCTCCATCGGCTTGAACCGTAACTTCCCGTGACTTTGGCCTGACGGTAAACTGTCCGCCGAACCCAGCCAAAGACCACAGCAGgagtatttaaagaaaaagaaagcttacactgtgatttatgattttttttttttttttttcttcctgccctaaacataaatattactatCACTGAGAGTTCACTGCTGCCTTTGTGGAAAGTCATTTTTTCTTGTATAGAGGGAGTAGggaatttcaaaaataaacttGGATGCAAACTA

Function

GO:

id name namespace
GO:0050847 progesterone receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0043130 ubiquitin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172344 lncRNA downstream 3309 26816120 ~ 26818848 (-) True G116670
TU172260 lncRNA downstream 9183 26810317 ~ 26812974 (-) False G116632
TU172255 lncRNA downstream 9248 26810317 ~ 26812909 (-) True G116632
TU172284 lncRNA downstream 78368 26741576 ~ 26743789 (-) True G116648
TU172283 lncRNA downstream 82296 26739105 ~ 26739861 (-) True G116647
TU172385 lncRNA upstream 284375 27153346 ~ 27213613 (-) True G116696
TU172391 lncRNA upstream 286124 27155095 ~ 27157490 (-) True G116700
TU172404 lncRNA upstream 370015 27238986 ~ 27240139 (-) True G116710
TU172405 lncRNA upstream 371644 27240615 ~ 27241091 (-) True G116711
TU172416 lncRNA upstream 430523 27299494 ~ 27307565 (-) False G116721
XM_043260794.1 mRNA downstream 315105 26479518 ~ 26507052 (-) True LOC122360302
XM_043261794.1 mRNA downstream 507312 26299517 ~ 26314845 (-) True fam110d
XM_043260419.1 mRNA downstream 548466 26270993 ~ 26273691 (-) True LOC122360092
XM_043261374.1 mRNA downstream 552012 26267933 ~ 26270145 (-) True LOC122360606
XM_043261372.1 mRNA downstream 554808 26264744 ~ 26267349 (-) True LOC122360603
XM_043261134.1 mRNA upstream 9700 26878671 ~ 26888899 (-) False LOC122360494
XM_043261133.1 mRNA upstream 9700 26878671 ~ 26888899 (-) False LOC122360494
XM_043261132.1 mRNA upstream 9700 26878671 ~ 26887878 (-) True LOC122360494
XM_043261135.1 mRNA upstream 9700 26878671 ~ 26887863 (-) False LOC122360494
XM_043261138.1 mRNA upstream 11127 26880098 ~ 26887997 (-) False LOC122360494
TU172263 other downstream 9183 26810317 ~ 26812974 (-) False G116632
TU172257 other downstream 9248 26810317 ~ 26812909 (-) False G116632
TU172261 other downstream 9248 26810317 ~ 26812909 (-) False G116632
TU172308 other downstream 13011 26807120 ~ 26809146 (-) True G116654
TU172219 other downstream 437970 26379672 ~ 26384187 (-) True G116604
TU172337 other upstream 5427 26874398 ~ 26876610 (-) True G116668
TU172354 other upstream 85249 26954220 ~ 26955834 (-) True G116677
TU172373 other upstream 125196 26994167 ~ 26998359 (-) False LOC122360878
TU172454 other upstream 489736 27358707 ~ 27360829 (-) True G116745
TU172389 other upstream 651219 27520190 ~ 27579864 (-) True LOC122360079

Expression Profile