RNA id: XM_043261934.1


Basic Information

Item Value
RNA id XM_043261934.1
length 7294
RNA type mRNA
GC content 0.49
exon number 48
gene id col14a1a
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 12839061 ~ 12944070 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCAACACCGTGAGAATTATTTAGGGCGAAGACTAGAAAATATATGCGATATAtgcttgacttttttttggCACTTTCTATGCGTTGTTATGCACCTTCTTGGATTTATTGCGGAGAATTTGAGGTGCAGGGCAAGCATCACTCACACGGCTATAAGGATGCGGGTGTCGGGATCGAGGATTAAGCTGTGGTGTCCGCTTATCTCGCTGGCACTGATTCAGTTTCTCACCCCTGTTTCGGCTCAAGTTCCAGCTCCAAGAAGACTTCGATTTAAAGTTCTGAGCGCAGGCAAGCTACTTGTCTCATGGAAGGAACCCAAAGGAGAATATGAAGGctacaaatttatatataacagtGAACCAGGTGGGGAAACAACCGAGTTGCAAATTGCAAGGGGAGAgaataaagcaataataaagGATTTTAATCCCAGGAACGAGTATTCAGTCAAGGTTATAGCTGTGAGTGGAAACCTGCACAGCCGAGCACTTCAGGGAAAATATACTGCAGAAGACCAGAGCAGTGATGGAGACACTACTCAGCCTCAAAGACTGAAAGAGCCTGGACCTGTGGAGGAGGGCAATGAGATTTCAGGAGTGGATCAGTTTGTCTGCACAACTTCTGCCATTGCGGATATTGTCATCCTGGTCGATGGATCTTGGAGTATTGGGCGAATCAATTTCCGCCTGGTTCGCATGTTCCTCGAAAACCTGGTCAATGCCTTCGACGTGGGAATAGACAAAACCCGGATTGGACTGGCCCAGTACAGCGGCGATCCACGGATAGAGTGGCACTTGAATGGCTTCAGTACAAAAGATGCAGTAATAGATGCTGTCAAAAACTTGCCGTACAAGGGAGGCAACACTCTCACAGGTCTTGCTCTTACCTACGTTTTGGAGAACAGCTTCAAACCTGAGTCTGGGGCTCGTGGCGATGTTCCCAAAATTGGAATTCTGATAACAGACGGCAAATCCCAGGATGATGTTATCCCACCTGCACAGATCCTGAGAAGTGCTGGAGTCGAGTTATTTGCCATTGGTGTGAAGAATGCTGATGAGAACGAGCTGAAGGCCATCGCCTCTGAACCAGAGGAAACACATGTTTATAATGTGGCAGACTTCAGTATCATGAGCACTATAGTGGATGGTCTTACCAGGAAGGTGTGTGATGGAGTGGAGCAACAAGACAAAGATATTAAACGAGATCCTTCTGCTGAAGAGACAGCATCTCCACCCCAGGACTTGGTCACTTCTGAGGTGACCGCACACAGTTTTCGTGTGTCCTGGACTCATGCGCCTGGCAGTGTGGAAAAATACCGGGTGGTTTACCATCCAACCGCAGCAGATGTTCTGGAAGAGATTGTGGTGGGCGGCACGGAGAATTCAGTCGTCCTGCAGAATTTGAACTCTCTGACTGAATACGAGATTGCTGTGTTCGCTGTGTACCGCAGCGCAGCGAGTGACGCTCTGAGAGGCAGCGAGATCACGCTGGCTCTACCAACAGTGAGTGATCTCGAGGTGTACGAAGTGACAGACAACAGCATGAGAGCCCGCTGGAGGGATGCAGAGGGGGCTTCTGGGTACATGATCCTTTACGCTCCACTGAGCGGTGAGACTACAGATGAAAGAGAGCTAAAGGTGGATGAGTCGGTGACTGATGTGGAGCTGACTGGAATGATTCCTGACACAGAGTACACCGTTACGGTCTATGCCTTGTTCGGAGAGGAGGCCAGCGATCCTGTAACTGTTCAGGAGACCACCATGTCCCTGAGACCTCCTCGTAACCTGCGGGTCACTGAAGTTGACCACAGCTCTGTGCGACTCAACTGGGACGCAGTGTCCAGGAAGGTTAAGGGCTACCGTGTGTTGTATATGAAGACAGATGGTGTCCAGACCAGTCAGGTGGATTTGGGTCCAGTCACCAACGTGTACCTGAAGAACCTGTCACCCTTAACAGAGTACACCGTTGCTGTTTTCGCTCTCTACGATgccggccaatcagaggcgCTCAGTGGCGGATTCAATACAAAGCTCGTGCCAGCCCCCTTCAGCCTCATGACATCACAGGTGACCTCAGAGAGTTTCCAGGTCAGCTGGTCACATCCTGCCAGAGATGTGGTGCTCTATAAGATGGCCTGGTCACCCACCGAAGGAGGACAAGAGAGGGAGATAATGCTGAGTGGAGCTGTGAACTCATATGTGATTCAAGACCTGAGTCCTTTTACACAGTATAAGGTGTCACTGTCAGCCATCTATGAAGACGAAATGGAGAGCAACCCTGTGGTTGTGCTTGAGAATACACtGGGCTGGACCACAGAAGTTCCCACAACTTTTCCCTCCACTACAGCATTTGTTCACCTGGGAGTGATTAACCTGTGGGTGGACGAGGAGACGCCCTTCAGTATGCGAGTGAACTGGGAGGTGCTGGACTCAGACGTGGAGCAGTACAAAGTGACGTATGTCAGTGCAGACCGCACAGAAGAGACGGTGTTAGTCTCTGGAAACAGAAGAAGCGTGATCCTGCAACCTCTCCTCTCAGACACAAGGTACAAGATCACAGTGACCCCTATTTATGCAGATGGAGAGTCCGCAGCTATGTCCAAGGCCTCTATCGGAAAAACTCTGCCACTTTCTGGACCCAGTAACCTCAGAGTGTCTGATGAATGGTATAATCGCTTCCGCATCAGCTGGGACGGCCCTCAGTTCCCCACTTTGGGTTACAGAGTCATCTATCAGCCCATTTCtgTGTCAGGTCCGGCTCTGGAGACGTTTGTAGGGGATGATGTGAGCACCCTGCTGATCCTCAATCTGTTGAGTGACACGGAGTACAGCGTTCAGGTCATCGCCTCCTACTCCACCGGCTCCAGCCAACCCCTCACCGGCAAGGGCAAAACACtgcTCCTGGGGGTGAAGAATCTCAGCACGTACCAGGTGCTCAGCAGCAGCTTGTGTGCCCAATGGCAGCCTCACCGCCACGCCACCGTCTACAGAGTCGTCATTGAGTCACTGCTCaATGGtcagaaacaggaagtgagggtCGGTGGCGGTGCGTCCAGAGAGTGCTTCTTCAGTCTGACCCCCAACACCCAGTACAAGATCAGCGTCTACACTCTCTTACAGGACACAGAGGGTCCCGCCGTCACCACTATGGCGACAACCGCTCCGGCACCCACCCAGCCACCGACTGCACCACCCACCACCATCCCTCCTCCCACCATCCCCCCAGCCAAAGAAGTTTGTAAAGCAGCCAAGGCAGACCTTGCCTTCCTTGTTGATGGCTCCTGGAGTATTGGAGATGACAACTTTCAGAAGATCATCCGTTTCCTGTACAGCACAACTGGTGCACTTGATGTGATTGGCCCCGAGGGAACACAGGTGGCCATTGTTCAGTTCAGTGATGACGCCAGAACCGAGTTCAAGCTCAGCTCCTACAGCGATAAGGAGGCTCTGCTGGACGCCGTGCAGCGCATCACCTACAAGGGAGGAAACACCAAGACAGGTCGAGCCATTAAGCATGTAAAGGAGGCCATCTTTGCTGAAGACGCGGGCGTTAGGAGGGGCATTCCCAAAGTGCTGGTGGTGCTCACGGACGGGCGATCTCAAGATGATGTCAACAAGATCTCGAAGGAGATGCAGATGGAGGGCTACATCATCTTTGCCATTGGCTTCGCTGATGCTGACTATGGGGAGCTGGTGAACATTGCCAGCAAACCAAGCGAGAGACATGTGTTCTTTGTGGACGATCTGGATGCCTTCAAGAAAATTGAAGAACAGCTCATAACTTTTGTTTGTGAGGCTGCGACTGCCActTGCCCCTCGATGTTAATGAGCGGGAACACTTTAGCTGGTTTCCGTATGATGGAGATGTTTGGTTTGGTGGAGAAGCACTACAGCAGCGTGCAAGGTGTCTCAATGGAGCCCGGGACTTTCAACAGCTACCCCTGCTACCGGCTGCACAAAGACGCCCTCGTCTCTCAGCCcaccagGTATCTACACCCTGAAGGCCTTCCGTCTGACTACACTATATCTATGCTGTTCCGCATACTGCCTGAAACTCCTCAGGAACCTTTTGCATTGTGGGAAATCCTTGACAAAAACAATGAGCCACTTGTGGGCATTATCCTGGACAACGGAGGGAAAACATTAACCTTTTTCAATTACGACTACAAGGGAGATTTTCAAACGGTGACTTTCGAAGGAAGTGAAATTAAGAAGATTTTCTATGGCAGTTTCCATAAGCTTCATGTGGCCATCAGCAGAACCGCTGCTAAAGTGGTGATTGACTGcaaaacggtgggagagaaatcCATCAACGCTGCAGGGAACATCACCATTGATGGAGTGGAGGTTCTGGGACGCATGGTCCGCTCACGTGGAAGGAGAGATAACTCAGCCCCGTTTCAGCTCCAGATGTTTGACATAGTCTGCAGTACATCGTGGGCCGGTCGGGATAAGTGCTGTGAGCTCCCAGGCTTGAGAGTAGAAGAGGACTGTCCCGCAATGCCCCATGCCTGCACCTGTGCTCAGGACAGCAAAGGACCGCCTGGACCCTCAGGACCACCGGGCGGTCCTGGTATCAGAGGTTCAAGAGGAGATCGGGGGGAGCCAGGCTTGACGGGGCCTCAAGGGCCACCTGGTGATATCGGACCTCCAGGGCCGCAAGGGCCACCGGGTCCTCAGGGGCCAAATGGACTGTCCATTCAGGGGCCACCGGGGGCTCCAGGAGTGAAAGGAGAGAAGGGTGAAATAGGTCTGCCAGGTCCTCAGgGTGTACCAGGTGCTGGTGGAGGACCAGGCCGAGATGGACCTCCAGGACAGAGAgGCCTACCGGGGAAGGATGGACCCCAGGGAAGACAAGGCCCTGCAGGACCAATgGGAAGCCCTGGAGCTCCTGGGTCTCCAGGACCAAGTGGATCTTCAGGGCAAATGGGTGATCAAGGGGCACCTGGGCCTCCCGGCACCAAAGGCGAAcgaggagagagaGGTGATATGCAGTCTCAGGCCGCTGTCCGTGCCATAGCGCGACAAGTTTGTGAACAGCTAATTCAGAGTCACTTGTCCCGCTACAACTCAATTCTGAACCAGATTCCCAGTCAGTCTGTTTCTGTACGTACCATTCCGGGTCCACCAGGTGAGTCTGGTCGACCAGGACCTCCGGGGCCACAGGGAGAGCAGGGTCCTCCTGGCAGACCAGGATTCCCTGGAGCCAGTGGGCAAAATGGGCGTCCAGGAGAGAGagGTCTCTCAGGAGATAGGGGAGAGAAGGGCAGTCCAGGAATCGGGACACAAGGCCCTCGTGGTCCTCCAGGACCCCCAGGGCCTCCTGGAGAAGGTCGGACAGGAAGTCAGGGCTCTCCAGGGAGACCTGGAATTCAAGGCACCTCAGGACGTCCAGGTATCCCTGGTAGCCCAGGTCCTGCCGGACCCCCCGGCTACTGTGACCAGAACTCCTGCATAGGATACAATGTTGGAGTACAACAGTTACCCTCCAACCCCTACCAAAACTACGGCCCCGCCACCAGCTACAACAAcgacgaggaggaggaagaggaccCTTACGGTGGCAACCGTGCCTACCCTCCTCAGTACTATCAACCCAGATATCCTGACCCCCATGCCGCCAGGTTTGGCCCCGCCCACCCTGGTGACACGGAGGGGATGAGGTCACCTGGCACGAGTCGTTTCTCCCGCAGCACGACCGAAGAGGGGATCGTCGAGGAGTCGGAAGTGCAAGTGAAGGCCAGATAGCTGGAGTGGCCAGCCCCGGCAAACCGACCGTCCACGTACAAACACTTTTCATCAGAATATCCTGCAGGATAGGACTGAGGGAAAACCCGAAAAGTGCCTGCTTATATGCATCTTAATGGGGGTGGGTTTGTGGAGAAGATTAGAAAATGAAACTGTGCCGATATTCATCCAGTgacttttctgtcttttgtgaGGCTGCATGTAGCCGATGAGATGAAAAGCAAGATCAAGGAAggaacactgcaaaaaaactaacaaaaaaaaaaaaaaaaagcagtattttTTGTCTGGTTGTCCAGTagaaatatcacaaaataattcaataaaatacagttcaaaaataaatcatataccacaaaaccagtcataagggtcaatttTGTGAAATTGAGATTCATACATTATCTGAACGCtgaataaaataagcttttcattaaTTTGTTAGGATAAGAGTTGTCCTTagcaaagcatattactaatcaaaaattaagttttgatatatttacagtaggaaattttggcataaaagaaaaatcagtaaTTTTAAGCCATAtgatgtattgttggctattgacttatgactggttttgtgctccaagGTCACATATCAAATTTTCCCaagatatataataataatatatgttgcATTTATATTCCTTCTcataatcacattttattaacctcacttaattaaatctaaatttatgCTTAAATATCTGTCaattataagaaaaataaacataataaaaagtaaaaatctattCTCTGAAAATGAGTTCCAACATTTCCACAAATAATTGAAGAAAGATATTATTACTGGAAAACGccaaaaatgctgatttacaaaatgatttttgcagCGCAGCGGTTTTGAATCGTGTATTCCATATCTTTTGTAAATGATAATAGGGGTGTGTGTAcagtttgtgtattttttttaagtgcaaattGGTGATCTACTATGTTACGGATTTCACAGATGTTTACAGCGTTTTGCAGTTATCTGGAACTGgctattaagttattttatttagaaaaatacctCCGTTCATGCTTTTGATGTCCTTATCACTAGCAGTTATTTATGAGAAGACGAATTCTTCAGTCACACTTAACAACGCATTAATAAAACCAACCTGATCGCCTACATTTTCGCTGGTTAAAGTACGTCGCAGTGTAACACCGCGCATTTTGTCGGGATCGTAATCGTATTATCACGCATTTATGTGAACGTCCTTTACATATGGTCTTGTAAGATGAAGTTTCATGCAGGGGATGCGGTGGAAGCTCTCAAAGTGTTTTTGTATAAAAGAAGAGCTCAGCATGGCATCCTTCCGTGTCTCTGTGGTCCTGTTTCCAATGGGTCTGCTCACTGTGAAAGAGACCTGAATAGTTAGAGTTAGGCCTGTGGTCTACCGTCCTTTCAGAACGAAAGCGGATGCCAGTGGAAAGACTCATCACCAGACCTTTGAATCtacaaagtaatttatttttactttattatttgtttttgtaaccaATAAAACCGTACTGCAACAATGACTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165121 lncRNA downstream 186655 12567205 ~ 12652406 (-) True G111862
TU165120 lncRNA downstream 214442 12567205 ~ 12624619 (-) False G111862
TU165116 lncRNA downstream 227067 12557811 ~ 12611994 (-) True G111860
TU165016 lncRNA downstream 348941 12489782 ~ 12490120 (-) True G111799
TU165036 lncRNA downstream 351368 12486851 ~ 12487693 (-) True G111809
TU165647 lncRNA upstream 81229 13024933 ~ 13026129 (-) True G112229
TU165679 lncRNA upstream 244215 13187919 ~ 13200640 (-) False G112256
TU165680 lncRNA upstream 253174 13196878 ~ 13200640 (-) True G112256
TU165691 lncRNA upstream 270226 13213930 ~ 13227818 (-) True G112261
TU165689 lncRNA upstream 273499 13217203 ~ 13249624 (-) True G112260
XM_043261936.1 mRNA downstream 13500 12806228 ~ 12825561 (-) False LOC122361014
XM_043261935.1 mRNA downstream 13500 12806228 ~ 12825561 (-) True LOC122361014
XM_043260442.1 mRNA downstream 239067 12577861 ~ 12599994 (-) True setd2
XM_043261760.1 mRNA downstream 341504 12491498 ~ 12497557 (-) True ccdc12
XM_043260450.1 mRNA downstream 416942 12419118 ~ 12422119 (-) True LOC122360109
XM_043260696.1 mRNA upstream 4246 12947950 ~ 12975794 (-) True deptor
XM_043260517.1 mRNA upstream 99122 13042826 ~ 13048403 (-) True polr3c
XM_043260518.1 mRNA upstream 111693 13055397 ~ 13060927 (-) True gba
XM_043261648.1 mRNA upstream 117331 13061035 ~ 13066879 (-) False dap3
XM_043261646.1 mRNA upstream 117331 13061035 ~ 13066043 (-) False dap3
TU164609 other downstream 1427284 11410678 ~ 11411777 (-) True G111490
TU164545 other downstream 1552629 11270664 ~ 11286432 (-) False G111450
TU164396 other downstream 1955850 10861951 ~ 10883211 (-) False LOC122360812
TU164397 other downstream 1972633 10861951 ~ 10866428 (-) False LOC122360812
TU164366 other downstream 2090761 10746793 ~ 10748300 (-) False LOC122361037
TU165859 other upstream 710356 13654060 ~ 13683909 (-) True zgc:92606
TU166030 other upstream 1290850 14234554 ~ 14301619 (-) True G112478
XR_006252733.1 other upstream 1965621 14909325 ~ 14913646 (-) False LOC122359907
TU167048 other upstream 2524776 15468480 ~ 15496375 (-) False rps19
TU167050 other upstream 2524776 15468480 ~ 15496375 (-) False rps19

Expression Profile